Wall clock time and date at job start Mon Mar 30 2020 02:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 119.99998 * 2 1 4 4 H 1.48503 * 109.47056 * 239.99625 * 3 2 1 5 5 H 1.48500 * 109.46987 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47626 * 119.99748 * 3 2 1 7 7 C 1.37871 * 120.00110 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00390 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00045 * 0.02562 * 7 2 1 10 10 C 1.50696 * 109.47270 * 179.97438 * 9 7 2 11 11 C 1.38924 * 119.92722 * 270.24713 * 10 9 7 12 12 C 1.36207 * 121.24401 * 180.26553 * 11 10 9 13 13 C 1.40754 * 120.05299 * 359.48393 * 12 11 10 14 14 N 1.33822 * 132.06212 * 180.25878 * 13 12 11 15 15 N 1.27168 * 120.00949 * 180.02562 * 14 13 12 16 16 S 1.56644 * 110.53652 * 359.97438 * 15 14 13 17 17 C 1.40944 * 117.84151 * 0.25379 * 13 12 11 18 18 C 1.36893 * 119.92643 * 89.99541 * 10 9 7 19 19 H 0.97000 * 120.00081 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.47276 * 59.99468 * 9 7 2 21 21 H 1.09000 * 109.46684 * 299.99553 * 9 7 2 22 22 H 1.08001 * 119.37662 * 0.02562 * 11 10 9 23 23 H 1.08002 * 119.97707 * 179.76638 * 12 11 10 24 24 H 1.07995 * 120.22570 * 359.97438 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2303 -3.6445 0.0005 11 6 2.6846 -4.1680 -1.2035 12 6 3.5655 -5.2064 -1.2348 13 6 4.0417 -5.7633 -0.0330 14 7 4.8963 -6.7627 0.2152 15 7 5.1693 -7.0828 1.4153 16 16 4.3880 -6.1687 2.4192 17 6 3.5730 -5.2149 1.1778 18 6 2.6741 -4.1636 1.1869 19 1 -0.4850 0.8400 -0.0004 20 1 0.6246 -2.5571 -0.8896 21 1 0.6241 -2.5566 0.8903 22 1 2.3297 -3.7460 -2.1321 23 1 3.9024 -5.5998 -2.1825 24 1 2.3252 -3.7547 2.1236 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261266658.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:03 Heat of formation + Delta-G solvation = 55.130134 kcal Electronic energy + Delta-G solvation = -11830.764144 eV Core-core repulsion = 9642.325339 eV Total energy + Delta-G solvation = -2188.438805 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 220.037 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.99659 -39.16355 -35.34994 -33.08452 -32.17808 -29.78080 -27.14463 -24.98129 -24.05760 -22.47268 -20.20049 -18.51094 -17.72474 -16.89834 -16.75429 -16.55732 -15.59021 -14.98826 -14.50322 -14.10609 -13.68474 -13.38147 -13.22284 -13.09785 -12.55839 -12.51426 -11.90789 -11.66839 -11.60907 -11.41510 -11.11315 -10.58229 -10.05376 -9.12812 -8.19717 -6.32204 -1.06231 -0.00677 0.07749 0.64402 0.99129 1.45042 1.45111 1.53502 2.39292 2.61111 2.74037 3.13126 3.43778 3.99392 4.18976 4.33178 4.45833 4.81843 4.87745 5.18521 5.24013 5.36047 5.67149 5.74365 5.81591 6.14148 6.63162 6.79812 7.36777 8.89036 Molecular weight = 220.04amu Principal moments of inertia in cm(-1) A = 0.048685 B = 0.006890 C = 0.006631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.986137 B = 4063.037794 C = 4221.474489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.012 3.988 3 Si 0.959 3.041 4 H -0.268 1.268 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.531 4.531 8 H 0.057 0.943 9 C 0.053 3.947 10 C -0.008 4.008 11 C -0.097 4.097 12 C -0.034 4.034 13 C -0.004 4.004 14 N -0.234 5.234 15 N -0.272 5.272 16 S 0.366 5.634 17 C -0.207 4.207 18 C -0.085 4.085 19 H 0.266 0.734 20 H 0.023 0.977 21 H 0.016 0.984 22 H 0.155 0.845 23 H 0.169 0.831 24 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.597 -8.164 1.400 9.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.188 4.188 3 Si 0.784 3.216 4 H -0.193 1.193 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.569 4.569 8 H 0.076 0.924 9 C 0.016 3.984 10 C -0.015 4.015 11 C -0.117 4.117 12 C -0.059 4.059 13 C -0.133 4.133 14 N -0.111 5.111 15 N -0.252 5.252 16 S 0.505 5.495 17 C -0.335 4.335 18 C -0.108 4.108 19 H 0.075 0.925 20 H 0.042 0.958 21 H 0.035 0.965 22 H 0.173 0.827 23 H 0.187 0.813 24 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 6.616 -9.428 2.523 11.791 hybrid contribution -0.619 1.841 -0.842 2.117 sum 5.997 -7.587 1.681 9.816 Atomic orbital electron populations 1.70037 1.07457 1.28071 1.50859 1.25790 0.95653 1.02717 0.94593 0.85592 0.78352 0.78624 0.79068 1.19298 1.20866 1.19607 1.21292 0.93202 0.90873 1.51491 0.92441 1.18227 0.92669 0.89912 0.97582 1.20491 0.94630 0.93584 0.92818 1.21056 0.96472 0.95092 0.99097 1.20499 0.95196 0.94546 0.95637 1.20760 0.99646 0.96517 0.96362 1.71062 1.14668 1.14619 1.10789 1.78371 1.22680 1.23726 1.00443 1.82016 1.31683 1.20570 1.15265 1.25260 1.05931 1.04747 0.97522 1.19815 0.96820 0.94409 0.99771 0.92507 0.95849 0.96545 0.82738 0.81335 0.84183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.79 13.29 21.44 0.28 -51.50 14 2 C 0.01 0.61 5.46 84.65 0.46 1.08 14 3 Si 0.96 41.47 29.54 68.60 2.03 43.49 14 4 H -0.27 -11.21 7.11 99.48 0.71 -10.51 14 5 H -0.28 -12.06 7.11 99.48 0.71 -11.35 14 6 H -0.27 -11.43 7.11 99.48 0.71 -10.73 14 7 C -0.53 -27.35 9.09 25.60 0.23 -27.11 14 8 H 0.06 2.91 7.74 -2.91 -0.02 2.89 14 9 C 0.05 2.48 5.10 29.10 0.15 2.63 14 10 C -0.01 -0.29 5.05 -20.02 -0.10 -0.39 14 11 C -0.10 -3.10 9.58 21.96 0.21 -2.89 14 12 C -0.03 -0.98 10.06 22.41 0.23 -0.75 14 13 C 0.00 -0.12 7.18 40.12 0.29 0.17 14 14 N -0.23 -7.88 11.66 -52.33 -0.61 -8.49 14 15 N -0.27 -8.66 12.45 37.02 0.46 -8.20 14 16 S 0.37 10.04 23.61 -56.49 -1.33 8.71 14 17 C -0.21 -6.76 6.79 22.95 0.16 -6.61 14 18 C -0.09 -2.99 9.66 21.97 0.21 -2.78 14 19 H 0.27 14.13 8.31 -92.71 -0.77 13.36 14 20 H 0.02 1.13 8.09 -2.39 -0.02 1.12 14 21 H 0.02 0.81 8.08 -2.39 -0.02 0.79 14 22 H 0.15 4.44 8.06 -2.91 -0.02 4.42 14 23 H 0.17 3.71 8.06 -2.91 -0.02 3.69 14 24 H 0.14 4.67 8.06 -2.91 -0.02 4.65 14 Total: -1.00 -58.20 236.21 3.88 -54.32 By element: Atomic # 1 Polarization: -2.89 SS G_CDS: 1.22 Total: -1.67 kcal Atomic # 6 Polarization: -38.49 SS G_CDS: 1.83 Total: -36.65 kcal Atomic # 7 Polarization: -68.33 SS G_CDS: 0.14 Total: -68.19 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.49 kcal Atomic # 16 Polarization: 10.04 SS G_CDS: -1.33 Total: 8.71 kcal Total: -58.20 3.88 -54.32 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261266658.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.449 kcal (2) G-P(sol) polarization free energy of solvation -58.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds