Wall clock time and date at job start Mon Mar 30 2020 02:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47465 * 2 1 4 4 C 1.50703 * 109.46746 * 240.00467 * 2 1 3 5 5 H 1.08004 * 119.99758 * 245.46699 * 4 2 1 6 6 C 1.37871 * 120.00248 * 65.46387 * 4 2 1 7 7 N 1.31517 * 119.99958 * 9.59769 * 6 4 2 8 8 Si 1.86799 * 120.00111 * 189.59539 * 6 4 2 9 9 H 1.48504 * 109.47096 * 84.99420 * 8 6 4 10 10 H 1.48501 * 109.47154 * 204.99346 * 8 6 4 11 11 H 1.48496 * 109.47098 * 324.99499 * 8 6 4 12 12 C 1.50703 * 109.47016 * 120.00601 * 2 1 3 13 13 C 1.38122 * 120.03783 * 60.01926 * 12 2 1 14 14 C 1.38267 * 120.07315 * 179.97438 * 13 12 2 15 15 C 1.38309 * 120.14759 * 0.02562 * 14 13 12 16 16 C 1.38079 * 120.07335 * 359.74731 * 15 14 13 17 17 C 1.38886 * 120.03297 * 239.99581 * 12 2 1 18 18 N 1.39676 * 120.07685 * 0.02562 * 17 12 2 19 19 C 1.46898 * 110.99851 * 240.00023 * 18 17 12 20 20 C 1.46902 * 111.00006 * 116.04703 * 18 17 12 21 21 H 1.09005 * 109.47188 * 303.26025 * 1 2 3 22 22 H 1.08998 * 109.47213 * 63.25665 * 1 2 3 23 23 H 1.08996 * 109.47241 * 183.25914 * 1 2 3 24 24 H 0.96999 * 119.99847 * 179.97438 * 7 6 4 25 25 H 1.08000 * 119.96428 * 359.97438 * 13 12 2 26 26 H 1.08003 * 119.92402 * 179.97438 * 14 13 12 27 27 H 1.08005 * 119.95775 * 179.97438 * 15 14 13 28 28 H 1.08000 * 120.03319 * 180.26982 * 16 15 14 29 29 H 1.09000 * 109.47615 * 60.00030 * 19 18 17 30 30 H 1.09006 * 109.47034 * 300.00141 * 19 18 17 31 31 H 1.09002 * 109.47013 * 180.02562 * 19 18 17 32 32 H 1.08998 * 109.47161 * 183.95499 * 20 18 17 33 33 H 1.09001 * 109.46935 * 303.95233 * 20 18 17 34 34 H 1.09005 * 109.47210 * 63.94914 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.5784 -1.6371 -1.1340 6 6 1.7946 -0.1772 -2.4796 7 7 1.3001 1.0361 -2.5935 8 14 2.1749 -1.1782 -4.0102 9 1 1.0222 -2.0604 -4.3238 10 1 2.4219 -0.2618 -5.1523 11 1 3.3828 -2.0082 -3.7714 12 6 2.0323 -0.7106 1.2304 13 6 1.6995 -2.0330 1.4494 14 6 2.1604 -2.6858 2.5778 15 6 2.9554 -2.0173 3.4910 16 6 3.2958 -0.6965 3.2757 17 6 2.8309 -0.0364 2.1451 18 7 3.1694 1.3010 1.9267 19 6 4.6260 1.4670 1.8342 20 6 2.6066 2.1642 2.9737 21 1 -0.3634 0.5636 0.8594 22 1 -0.3633 0.4624 -0.9177 23 1 -0.3633 -1.0260 0.0584 24 1 1.1332 1.4113 -3.4722 25 1 1.0785 -2.5578 0.7385 26 1 1.8982 -3.7198 2.7469 27 1 3.3134 -2.5301 4.3716 28 1 3.9202 -0.1764 3.9870 29 1 5.0080 0.8702 1.0060 30 1 5.0892 1.1366 2.7640 31 1 4.8619 2.5176 1.6645 32 1 2.8255 3.2065 2.7418 33 1 1.5270 2.0215 3.0208 34 1 3.0497 1.9051 3.9354 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261275959.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:14 Heat of formation + Delta-G solvation = 28.178042 kcal Electronic energy + Delta-G solvation = -15047.398874 eV Core-core repulsion = 12752.130567 eV Total energy + Delta-G solvation = -2295.268307 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.37304 -35.97739 -34.20838 -31.35809 -29.30124 -28.14057 -27.16596 -24.97564 -23.94678 -22.57663 -20.37429 -19.42784 -16.40986 -16.10643 -15.15887 -14.73222 -14.50507 -14.28361 -13.53069 -13.23865 -12.74595 -12.38840 -12.15388 -11.78302 -11.74622 -11.45398 -11.28242 -11.11800 -10.81545 -10.74153 -10.68200 -10.26569 -9.92733 -9.32957 -8.91984 -8.24402 -8.12833 -7.82258 -7.67661 -5.92239 -3.92947 1.95700 2.16357 3.35775 3.42152 3.45225 4.41489 4.43237 4.56529 5.40021 5.42147 5.53176 5.57025 5.63541 5.74249 5.84852 5.88443 6.12973 6.18571 6.30166 6.31240 6.48928 6.72744 6.88928 6.99934 7.00795 7.22512 7.28512 7.31053 7.41670 7.65207 7.80503 8.01524 8.13290 8.30243 8.52732 9.10679 9.68119 11.16315 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.027933 B = 0.010127 C = 0.008861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.149892 B = 2764.168742 C = 3159.311518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.068 3.932 3 H 0.069 0.931 4 C -0.505 4.505 5 H 0.053 0.947 6 C 0.065 3.935 7 N -0.885 5.885 8 Si 0.884 3.116 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.276 1.276 12 C -0.005 4.005 13 C -0.112 4.112 14 C -0.129 4.129 15 C -0.143 4.143 16 C -0.154 4.154 17 C 0.070 3.930 18 N -0.493 5.493 19 C 0.034 3.966 20 C 0.033 3.967 21 H 0.010 0.990 22 H 0.066 0.934 23 H 0.025 0.975 24 H 0.259 0.741 25 H 0.124 0.876 26 H 0.110 0.890 27 H 0.108 0.892 28 H 0.106 0.894 29 H 0.072 0.928 30 H 0.019 0.981 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.709 -1.339 10.128 10.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.050 3.950 3 H 0.087 0.913 4 C -0.543 4.543 5 H 0.071 0.929 6 C -0.137 4.137 7 N -0.524 5.524 8 Si 0.712 3.288 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.201 1.201 12 C -0.006 4.006 13 C -0.130 4.130 14 C -0.147 4.147 15 C -0.162 4.162 16 C -0.174 4.174 17 C -0.023 4.023 18 N -0.213 5.213 19 C -0.113 4.113 20 C -0.114 4.114 21 H 0.029 0.971 22 H 0.085 0.915 23 H 0.044 0.956 24 H 0.068 0.932 25 H 0.142 0.858 26 H 0.129 0.871 27 H 0.126 0.874 28 H 0.124 0.876 29 H 0.091 0.909 30 H 0.038 0.962 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 2.462 -1.019 9.534 9.899 hybrid contribution 0.620 -0.828 -0.093 1.038 sum 3.082 -1.847 9.441 10.101 Atomic orbital electron populations 1.21736 0.98631 0.98237 0.99639 1.17910 0.91566 0.97935 0.87597 0.91324 1.21081 1.35432 1.07611 0.90175 0.92892 1.24906 0.95520 0.94583 0.98652 1.69984 1.45192 1.13789 1.23404 0.86734 0.78656 0.80239 0.83123 1.20690 1.21419 1.20093 1.20633 0.91832 0.92964 0.95138 1.21095 1.00412 0.94782 0.96741 1.21087 0.99047 0.99232 0.95310 1.20705 1.01090 0.94668 0.99697 1.21428 1.01924 0.95755 0.98288 1.18703 0.99820 0.89548 0.94258 1.59399 1.11513 1.04466 1.45963 1.22378 0.86686 1.01943 1.00285 1.22382 1.00452 0.97025 0.91511 0.97078 0.91526 0.95553 0.93153 0.85841 0.87149 0.87436 0.87637 0.90911 0.96204 0.91553 0.91441 0.91422 0.96182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.02 8.93 37.16 0.33 -2.69 16 2 C 0.07 1.74 2.30 -92.92 -0.21 1.53 16 3 H 0.07 1.92 6.84 -51.93 -0.36 1.57 16 4 C -0.50 -13.96 8.19 -34.44 -0.28 -14.24 16 5 H 0.05 1.47 7.55 -52.48 -0.40 1.07 16 6 C 0.06 1.81 5.17 -17.82 -0.09 1.72 16 7 N -0.89 -25.64 12.16 55.43 0.67 -24.97 16 8 Si 0.88 21.51 29.55 -169.99 -5.02 16.49 16 9 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 12 C 0.00 -0.11 4.76 -104.42 -0.50 -0.60 16 13 C -0.11 -2.26 8.62 -39.61 -0.34 -2.60 16 14 C -0.13 -2.21 10.04 -39.54 -0.40 -2.61 16 15 C -0.14 -2.33 10.04 -39.61 -0.40 -2.73 16 16 C -0.15 -2.67 8.62 -39.38 -0.34 -3.01 16 17 C 0.07 1.41 4.70 -83.79 -0.39 1.01 16 18 N -0.49 -9.39 3.65 -186.85 -0.68 -10.07 16 19 C 0.03 0.56 9.34 60.06 0.56 1.12 16 20 C 0.03 0.52 9.33 60.07 0.56 1.08 16 21 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 22 H 0.07 1.75 6.84 -51.93 -0.36 1.40 16 23 H 0.03 0.59 7.28 -51.93 -0.38 0.21 16 24 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 25 H 0.12 2.49 7.55 -52.49 -0.40 2.09 16 26 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 27 H 0.11 1.44 8.06 -52.48 -0.42 1.02 16 28 H 0.11 1.62 7.05 -52.49 -0.37 1.25 16 29 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 30 H 0.02 0.29 7.11 -51.93 -0.37 -0.08 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.07 1.09 8.12 -51.93 -0.42 0.67 16 34 H 0.02 0.28 7.49 -51.93 -0.39 -0.11 16 LS Contribution 279.55 15.07 4.21 4.21 Total: -1.00 -29.31 279.55 -7.42 -36.73 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -5.10 Total: -0.37 kcal Atomic # 6 Polarization: -20.52 SS G_CDS: -1.50 Total: -22.02 kcal Atomic # 7 Polarization: -35.03 SS G_CDS: -0.01 Total: -35.04 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -29.31 -7.42 -36.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261275959.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.907 kcal (2) G-P(sol) polarization free energy of solvation -29.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds