Wall clock time and date at job start Mon Mar 30 2020 02:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47465 * 2 1 4 4 C 1.50703 * 109.46746 * 240.00467 * 2 1 3 5 5 H 1.08004 * 119.99758 * 245.46699 * 4 2 1 6 6 C 1.37871 * 120.00248 * 65.46387 * 4 2 1 7 7 N 1.31517 * 119.99958 * 9.59769 * 6 4 2 8 8 Si 1.86799 * 120.00111 * 189.59539 * 6 4 2 9 9 H 1.48504 * 109.47096 * 84.99420 * 8 6 4 10 10 H 1.48501 * 109.47154 * 204.99346 * 8 6 4 11 11 H 1.48496 * 109.47098 * 324.99499 * 8 6 4 12 12 C 1.50703 * 109.47016 * 120.00601 * 2 1 3 13 13 C 1.38122 * 120.03783 * 60.01926 * 12 2 1 14 14 C 1.38267 * 120.07315 * 179.97438 * 13 12 2 15 15 C 1.38309 * 120.14759 * 0.02562 * 14 13 12 16 16 C 1.38079 * 120.07335 * 359.74731 * 15 14 13 17 17 C 1.38886 * 120.03297 * 239.99581 * 12 2 1 18 18 N 1.39676 * 120.07685 * 0.02562 * 17 12 2 19 19 C 1.46898 * 110.99851 * 240.00023 * 18 17 12 20 20 C 1.46902 * 111.00006 * 116.04703 * 18 17 12 21 21 H 1.09005 * 109.47188 * 303.26025 * 1 2 3 22 22 H 1.08998 * 109.47213 * 63.25665 * 1 2 3 23 23 H 1.08996 * 109.47241 * 183.25914 * 1 2 3 24 24 H 0.96999 * 119.99847 * 179.97438 * 7 6 4 25 25 H 1.08000 * 119.96428 * 359.97438 * 13 12 2 26 26 H 1.08003 * 119.92402 * 179.97438 * 14 13 12 27 27 H 1.08005 * 119.95775 * 179.97438 * 15 14 13 28 28 H 1.08000 * 120.03319 * 180.26982 * 16 15 14 29 29 H 1.09000 * 109.47615 * 60.00030 * 19 18 17 30 30 H 1.09006 * 109.47034 * 300.00141 * 19 18 17 31 31 H 1.09002 * 109.47013 * 180.02562 * 19 18 17 32 32 H 1.08998 * 109.47161 * 183.95499 * 20 18 17 33 33 H 1.09001 * 109.46935 * 303.95233 * 20 18 17 34 34 H 1.09005 * 109.47210 * 63.94914 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.5784 -1.6371 -1.1340 6 6 1.7946 -0.1772 -2.4796 7 7 1.3001 1.0361 -2.5935 8 14 2.1749 -1.1782 -4.0102 9 1 1.0222 -2.0604 -4.3238 10 1 2.4219 -0.2618 -5.1523 11 1 3.3828 -2.0082 -3.7714 12 6 2.0323 -0.7106 1.2304 13 6 1.6995 -2.0330 1.4494 14 6 2.1604 -2.6858 2.5778 15 6 2.9554 -2.0173 3.4910 16 6 3.2958 -0.6965 3.2757 17 6 2.8309 -0.0364 2.1451 18 7 3.1694 1.3010 1.9267 19 6 4.6260 1.4670 1.8342 20 6 2.6066 2.1642 2.9737 21 1 -0.3634 0.5636 0.8594 22 1 -0.3633 0.4624 -0.9177 23 1 -0.3633 -1.0260 0.0584 24 1 1.1332 1.4113 -3.4722 25 1 1.0785 -2.5578 0.7385 26 1 1.8982 -3.7198 2.7469 27 1 3.3134 -2.5301 4.3716 28 1 3.9202 -0.1764 3.9870 29 1 5.0080 0.8702 1.0060 30 1 5.0892 1.1366 2.7640 31 1 4.8619 2.5176 1.6645 32 1 2.8255 3.2065 2.7418 33 1 1.5270 2.0215 3.0208 34 1 3.0497 1.9051 3.9354 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261275959.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:14 Heat of formation + Delta-G solvation = 12.150563 kcal Electronic energy + Delta-G solvation = -15048.093877 eV Core-core repulsion = 12752.130567 eV Total energy + Delta-G solvation = -2295.963310 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.80679 -37.37959 -36.08041 -33.29491 -30.69385 -29.80561 -28.42517 -27.09785 -25.28874 -24.24377 -21.85804 -21.08550 -18.20098 -17.78645 -16.73840 -16.42043 -15.88237 -15.83931 -14.96071 -14.70730 -14.49767 -14.09910 -13.63146 -13.41045 -13.09730 -13.07613 -12.80988 -12.66050 -12.61426 -12.54900 -12.25514 -12.20202 -11.73716 -11.16102 -10.94233 -10.35921 -9.54173 -9.23992 -9.13832 -8.05369 -6.12820 0.55167 0.72431 1.41465 1.42406 1.51420 2.46607 3.02807 3.11740 3.25015 4.14339 4.22377 4.31473 4.40739 4.42789 4.58858 4.65612 4.68404 4.86992 4.92793 4.96761 4.98887 5.04245 5.05720 5.27011 5.42638 5.60761 5.64830 5.68193 5.79515 6.03503 6.13943 6.16186 6.25571 6.48379 6.72171 6.98427 7.51455 9.02289 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.027933 B = 0.010127 C = 0.008861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.149892 B = 2764.168742 C = 3159.311518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.074 3.926 3 H 0.034 0.966 4 C -0.516 4.516 5 H 0.044 0.956 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.945 3.055 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.272 1.272 12 C -0.045 4.045 13 C -0.128 4.128 14 C -0.125 4.125 15 C -0.130 4.130 16 C -0.152 4.152 17 C 0.061 3.939 18 N -0.528 5.528 19 C 0.038 3.962 20 C 0.037 3.963 21 H 0.022 0.978 22 H 0.038 0.962 23 H 0.034 0.966 24 H 0.259 0.741 25 H 0.112 0.888 26 H 0.143 0.857 27 H 0.149 0.851 28 H 0.132 0.868 29 H 0.046 0.954 30 H 0.043 0.957 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.053 0.947 34 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.705 -2.552 11.966 12.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.055 3.945 3 H 0.052 0.948 4 C -0.554 4.554 5 H 0.063 0.937 6 C -0.182 4.182 7 N -0.555 5.555 8 Si 0.771 3.229 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.197 1.197 12 C -0.045 4.045 13 C -0.147 4.147 14 C -0.143 4.143 15 C -0.148 4.148 16 C -0.172 4.172 17 C -0.033 4.033 18 N -0.249 5.249 19 C -0.109 4.109 20 C -0.109 4.109 21 H 0.041 0.959 22 H 0.057 0.943 23 H 0.053 0.947 24 H 0.068 0.932 25 H 0.130 0.870 26 H 0.161 0.839 27 H 0.166 0.834 28 H 0.150 0.850 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.072 0.928 34 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 3.460 -2.236 11.382 12.105 hybrid contribution 0.335 -0.446 -0.578 0.803 sum 3.795 -2.683 10.805 11.762 Atomic orbital electron populations 1.21574 0.98441 0.98510 0.98583 1.17638 0.91740 0.96201 0.88905 0.94794 1.21366 1.35130 1.07354 0.91598 0.93731 1.25639 0.95584 0.95462 1.01503 1.70106 1.46323 1.15131 1.23944 0.85769 0.78639 0.78861 0.79588 1.19905 1.21073 1.19706 1.20458 0.94734 0.94182 0.95172 1.21097 1.01186 0.94250 0.98118 1.21402 0.98261 1.00640 0.93984 1.21191 0.99210 0.94188 1.00255 1.21684 1.01618 0.96349 0.97543 1.18842 0.99535 0.90156 0.94730 1.59313 1.12941 1.04697 1.47958 1.22344 0.85576 1.02532 1.00404 1.22379 0.99611 0.97193 0.91764 0.95908 0.94322 0.94737 0.93197 0.87027 0.83908 0.83368 0.85035 0.93496 0.93833 0.90053 0.90144 0.92769 0.93907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.69 8.93 71.98 0.64 -5.05 16 2 C 0.07 3.89 2.30 -12.28 -0.03 3.86 16 3 H 0.03 2.00 6.84 -2.39 -0.02 1.98 16 4 C -0.52 -29.41 8.19 25.60 0.21 -29.20 16 5 H 0.04 2.54 7.55 -2.91 -0.02 2.52 16 6 C 0.02 0.95 5.17 84.65 0.44 1.39 16 7 N -0.92 -54.69 12.16 21.45 0.26 -54.43 16 8 Si 0.95 44.86 29.55 68.60 2.03 46.88 16 9 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 10 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 11 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 12 C -0.04 -2.00 4.76 -19.74 -0.09 -2.10 16 13 C -0.13 -5.10 8.62 22.25 0.19 -4.91 16 14 C -0.13 -3.92 10.04 22.29 0.22 -3.70 16 15 C -0.13 -3.69 10.04 22.25 0.22 -3.47 16 16 C -0.15 -4.79 8.62 22.40 0.19 -4.60 16 17 C 0.06 2.39 4.70 38.21 0.18 2.57 16 18 N -0.53 -19.89 3.65 -745.07 -2.72 -22.61 16 19 C 0.04 1.22 9.34 127.69 1.19 2.41 16 20 C 0.04 1.11 9.33 127.69 1.19 2.30 16 21 H 0.02 1.03 8.14 -2.38 -0.02 1.01 16 22 H 0.04 2.11 6.84 -2.39 -0.02 2.09 16 23 H 0.03 1.61 7.28 -2.39 -0.02 1.59 16 24 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 25 H 0.11 4.56 7.55 -2.91 -0.02 4.54 16 26 H 0.14 3.50 8.06 -2.91 -0.02 3.47 16 27 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 28 H 0.13 3.43 7.05 -2.91 -0.02 3.41 16 29 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.04 1.15 7.11 -2.38 -0.02 1.14 16 31 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.05 1.73 8.12 -2.39 -0.02 1.71 16 34 H 0.04 1.07 7.49 -2.38 -0.02 1.05 16 Total: -1.00 -64.66 279.55 5.19 -59.48 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: 1.06 Total: 11.18 kcal Atomic # 6 Polarization: -45.06 SS G_CDS: 4.56 Total: -40.49 kcal Atomic # 7 Polarization: -74.58 SS G_CDS: -2.46 Total: -77.04 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.88 kcal Total: -64.66 5.19 -59.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261275959.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.627 kcal (2) G-P(sol) polarization free energy of solvation -64.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds