Wall clock time and date at job start Mon Mar 30 2020 02:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30754 * 1 3 3 Si 1.86796 * 120.00001 * 2 1 4 4 H 1.48493 * 109.47462 * 270.00256 * 3 2 1 5 5 H 1.48504 * 109.47284 * 30.00706 * 3 2 1 6 6 H 1.48507 * 109.47164 * 149.99872 * 3 2 1 7 7 C 1.40184 * 119.99787 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99443 * 180.02562 * 7 2 1 9 9 C 1.39890 * 120.00091 * 359.97438 * 7 2 1 10 10 C 1.37177 * 124.84007 * 180.02562 * 9 7 2 11 11 C 1.39216 * 114.96595 * 180.02562 * 10 9 7 12 12 C 1.40513 * 113.07998 * 359.97438 * 11 10 9 13 13 C 1.39355 * 119.15137 * 180.02562 * 12 11 10 14 14 N 1.31565 * 121.10146 * 0.02562 * 13 12 11 15 15 C 1.32080 * 122.24062 * 359.97438 * 14 13 12 16 16 C 1.38060 * 121.20638 * 359.97438 * 15 14 13 17 17 N 1.39109 * 120.49890 * 180.02562 * 16 15 14 18 18 S 1.75510 * 124.84308 * 0.28261 * 9 7 2 19 19 H 0.96997 * 119.99973 * 359.97438 * 1 2 3 20 20 H 1.08009 * 122.51684 * 0.02562 * 10 9 7 21 21 H 1.08005 * 119.44577 * 180.02562 * 13 12 11 22 22 H 1.08000 * 119.39748 * 180.02562 * 15 14 13 23 23 H 0.96995 * 119.99891 * 359.97438 * 17 16 15 24 24 H 0.97009 * 120.00171 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4890 2.0465 -1.4000 5 1 1.4391 2.6526 0.7002 6 1 3.5391 1.4401 0.7001 7 6 2.0084 -1.2141 -0.0005 8 1 3.0885 -1.2140 -0.0001 9 6 1.3089 -2.4255 -0.0005 10 6 1.8921 -3.6672 -0.0005 11 6 0.9996 -4.7356 -0.0011 12 6 -0.3456 -4.3295 -0.0010 13 6 -1.3472 -5.2985 -0.0010 14 7 -1.0523 -6.5807 -0.0006 15 6 0.1944 -7.0170 -0.0006 16 6 1.2596 -6.1387 -0.0017 17 7 2.5668 -6.6144 -0.0023 18 16 -0.4399 -2.5737 -0.0070 19 1 -0.4850 0.8400 0.0004 20 1 2.9633 -3.8055 -0.0001 21 1 -2.3827 -4.9917 -0.0013 22 1 0.3839 -8.0802 -0.0007 23 1 2.7353 -7.5696 -0.0016 24 1 3.3100 -5.9908 -0.0027 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261279196.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:51 Heat of formation + Delta-G solvation = 20.125677 kcal Electronic energy + Delta-G solvation = -12025.739711 eV Core-core repulsion = 9835.782998 eV Total energy + Delta-G solvation = -2189.956712 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 220.037 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.91738 -35.24011 -34.11750 -33.45058 -29.44782 -27.94842 -25.73705 -22.90587 -21.53623 -19.52625 -18.12683 -16.52968 -16.21387 -15.57022 -14.96310 -14.06170 -13.84447 -13.21658 -13.04370 -12.96853 -11.97711 -11.78427 -11.34033 -11.13772 -10.85079 -10.53408 -10.44285 -10.25080 -9.62951 -9.19585 -8.46860 -7.90922 -7.27997 -7.20928 -6.21349 -4.70524 2.13579 2.38455 2.81300 2.82401 2.88419 3.24306 3.54779 3.61682 3.80827 4.63392 4.69870 5.13595 5.65029 5.85756 6.30108 6.43442 6.63250 6.69519 6.79802 7.23506 7.45008 7.56765 7.64737 7.85571 8.18221 8.28696 8.34414 8.45524 9.24730 9.61989 Molecular weight = 220.04amu Principal moments of inertia in cm(-1) A = 0.052700 B = 0.008924 C = 0.007652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.185872 B = 3136.870141 C = 3658.211083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.776 5.776 2 C 0.053 3.947 3 Si 0.939 3.061 4 H -0.263 1.263 5 H -0.271 1.271 6 H -0.257 1.257 7 C -0.384 4.384 8 H 0.098 0.902 9 C 0.053 3.947 10 C -0.355 4.355 11 C -0.008 4.008 12 C -0.291 4.291 13 C 0.109 3.891 14 N -0.501 5.501 15 C -0.017 4.017 16 C 0.140 3.860 17 N -0.876 5.876 18 S 0.163 5.837 19 H 0.302 0.698 20 H 0.103 0.897 21 H 0.132 0.868 22 H 0.127 0.873 23 H 0.388 0.612 24 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.509 -0.341 -0.014 2.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C -0.169 4.169 3 Si 0.762 3.238 4 H -0.188 1.188 5 H -0.195 1.195 6 H -0.181 1.181 7 C -0.419 4.419 8 H 0.116 0.884 9 C -0.068 4.068 10 C -0.381 4.381 11 C -0.025 4.025 12 C -0.410 4.410 13 C -0.061 4.061 14 N -0.212 5.212 15 C -0.172 4.172 16 C 0.033 3.967 17 N -0.416 5.416 18 S 0.422 5.578 19 H 0.115 0.885 20 H 0.121 0.879 21 H 0.150 0.850 22 H 0.145 0.855 23 H 0.215 0.785 24 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 0.464 0.136 -0.018 0.484 hybrid contribution 2.670 0.106 0.005 2.672 sum 3.133 0.242 -0.013 3.143 Atomic orbital electron populations 1.68605 1.07769 1.31152 1.32773 1.26306 0.95130 1.02983 0.92437 0.85751 0.80077 0.78245 0.79753 1.18798 1.19533 1.18066 1.19293 0.95648 0.88581 1.38343 0.88409 1.21462 0.95050 0.95697 0.94611 1.19265 0.97325 0.89934 1.31612 1.17688 0.93000 0.91183 1.00583 1.24437 0.96678 1.03673 1.16229 1.21419 0.97008 0.87111 1.00567 1.67230 1.20793 1.16608 1.16542 1.21249 0.87348 0.97429 1.11187 1.18678 0.85820 0.91913 1.00247 1.41948 1.04389 1.08618 1.86654 1.84744 1.04878 0.90930 1.77274 0.88469 0.87880 0.85040 0.85532 0.78518 0.77895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -17.77 10.58 55.56 0.59 -17.18 14 2 C 0.05 1.18 5.50 -17.28 -0.10 1.09 14 3 Si 0.94 16.55 29.56 -169.99 -5.03 11.53 14 4 H -0.26 -4.60 7.11 56.52 0.40 -4.19 14 5 H -0.27 -4.65 7.11 56.52 0.40 -4.25 14 6 H -0.26 -4.49 7.11 56.52 0.40 -4.09 14 7 C -0.38 -9.29 9.27 -38.23 -0.35 -9.64 14 8 H 0.10 2.23 7.85 -52.48 -0.41 1.81 14 9 C 0.05 1.34 6.12 -39.35 -0.24 1.10 14 10 C -0.36 -8.83 9.80 -39.60 -0.39 -9.21 14 11 C -0.01 -0.20 5.90 -106.95 -0.63 -0.83 14 12 C -0.29 -7.16 6.50 -38.31 -0.25 -7.40 14 13 C 0.11 2.51 11.21 -17.25 -0.19 2.31 14 14 N -0.50 -11.40 10.32 -13.02 -0.13 -11.53 14 15 C -0.02 -0.36 10.99 -17.51 -0.19 -0.55 14 16 C 0.14 3.02 6.86 -82.90 -0.57 2.45 14 17 N -0.88 -14.84 9.07 32.90 0.30 -14.54 14 18 S 0.16 3.96 20.13 -107.50 -2.16 1.80 14 19 H 0.30 6.16 8.29 -40.82 -0.34 5.82 14 20 H 0.10 2.39 7.52 -52.48 -0.39 2.00 14 21 H 0.13 2.67 8.06 -52.48 -0.42 2.25 14 22 H 0.13 2.29 8.06 -52.49 -0.42 1.86 14 23 H 0.39 5.26 8.84 -40.82 -0.36 4.90 14 24 H 0.39 6.38 8.01 -40.82 -0.33 6.06 14 LS Contribution 229.76 15.07 3.46 3.46 Total: -1.00 -27.61 229.76 -7.36 -34.97 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -1.47 Total: 12.18 kcal Atomic # 6 Polarization: -17.78 SS G_CDS: -2.91 Total: -20.69 kcal Atomic # 7 Polarization: -44.00 SS G_CDS: 0.75 Total: -43.25 kcal Atomic # 14 Polarization: 16.55 SS G_CDS: -5.03 Total: 11.53 kcal Atomic # 16 Polarization: 3.96 SS G_CDS: -2.16 Total: 1.80 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -27.61 -7.36 -34.97 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261279196.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.094 kcal (2) G-P(sol) polarization free energy of solvation -27.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds