Wall clock time and date at job start Mon Mar 30 2020 02:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30935 * 1 3 3 Si 1.86799 * 120.00021 * 2 1 4 4 H 1.48504 * 109.47234 * 239.99679 * 3 2 1 5 5 H 1.48492 * 109.47172 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47269 * 120.00251 * 3 2 1 7 7 C 1.40033 * 120.00318 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00585 * 180.02562 * 7 2 1 9 9 C 1.39532 * 119.99937 * 359.97438 * 7 2 1 10 10 S 1.75412 * 124.82566 * 359.97438 * 9 7 2 11 11 C 1.76067 * 92.00127 * 179.97438 * 10 9 7 12 12 N 1.33313 * 129.81445 * 180.02562 * 11 10 9 13 13 C 1.31458 * 122.27179 * 179.70222 * 12 11 10 14 14 C 1.38653 * 121.08073 * 0.58699 * 13 12 11 15 15 C 1.37657 * 119.48721 * 359.42340 * 14 13 12 16 16 C 1.40187 * 110.01613 * 359.97438 * 11 10 9 17 17 C 1.37875 * 124.83378 * 179.97438 * 9 7 2 18 18 N 1.38646 * 122.71215 * 0.02562 * 17 9 7 19 19 H 0.96998 * 120.00138 * 0.02562 * 1 2 3 20 20 H 1.08003 * 119.45607 * 180.28961 * 13 12 11 21 21 H 1.08002 * 120.25996 * 179.70427 * 14 13 12 22 22 H 1.07999 * 120.61667 * 180.29764 * 15 14 13 23 23 H 0.96997 * 119.99730 * 179.97438 * 18 17 9 24 24 H 0.97005 * 119.99942 * 359.97438 * 18 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3094 0.0000 0.0000 3 14 2.2434 1.6177 0.0000 4 1 3.0972 1.6964 -1.2125 5 1 1.2784 2.7464 -0.0006 6 1 3.0972 1.6964 1.2125 7 6 2.0096 -1.2127 0.0005 8 1 3.0896 -1.2127 0.0010 9 6 1.3120 -2.4211 0.0016 10 16 -0.4359 -2.5687 0.0030 11 6 -0.3491 -4.3273 0.0030 12 7 -1.3297 -5.2303 0.0033 13 6 -1.0931 -6.5234 -0.0026 14 6 0.2038 -7.0138 0.0027 15 6 1.2614 -6.1327 0.0022 16 6 0.9902 -4.7416 0.0013 17 6 1.8983 -3.6689 0.0017 18 7 3.2728 -3.8510 0.0013 19 1 -0.4850 0.8400 -0.0004 20 1 -1.9226 -7.2151 -0.0068 21 1 0.3829 -8.0789 0.0025 22 1 2.2789 -6.4947 0.0014 23 1 3.6433 -4.7474 0.0017 24 1 3.8639 -3.0818 0.0005 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261282084.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:01 Heat of formation + Delta-G solvation = 27.564452 kcal Electronic energy + Delta-G solvation = -12143.597153 eV Core-core repulsion = 9953.963010 eV Total energy + Delta-G solvation = -2189.634143 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 220.037 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.80083 -35.88267 -33.82506 -30.99392 -30.53424 -28.96379 -25.37864 -22.60494 -21.86718 -19.19185 -17.98810 -16.43146 -16.24441 -15.24402 -14.74131 -14.31909 -13.43708 -13.35000 -13.21334 -12.36726 -12.12695 -11.74235 -11.71532 -11.12520 -11.02514 -10.60874 -10.26152 -9.77275 -9.39131 -9.09692 -8.32347 -8.26387 -7.46843 -7.09640 -6.16520 -4.22708 1.93315 2.29996 2.85235 2.86422 2.90258 3.09805 3.59655 3.69923 3.83657 4.71726 5.11582 5.43243 5.72057 5.74901 5.99837 6.38382 6.51951 6.70241 6.90882 6.95953 7.20768 7.41325 7.74144 7.80760 8.11256 8.31924 8.99899 9.10287 9.19367 9.73269 Molecular weight = 220.04amu Principal moments of inertia in cm(-1) A = 0.051491 B = 0.009786 C = 0.008247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.656140 B = 2860.650512 C = 3394.464028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.049 3.951 3 Si 0.938 3.062 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.261 1.261 7 C -0.373 4.373 8 H 0.094 0.906 9 C -0.013 4.013 10 S 0.214 5.786 11 C -0.071 4.071 12 N -0.437 5.437 13 C 0.022 3.978 14 C -0.168 4.168 15 C -0.110 4.110 16 C -0.071 4.071 17 C -0.024 4.024 18 N -0.880 5.880 19 H 0.301 0.699 20 H 0.134 0.866 21 H 0.111 0.889 22 H 0.107 0.893 23 H 0.375 0.625 24 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.957 -1.303 -0.007 3.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.170 4.170 3 Si 0.762 3.238 4 H -0.186 1.186 5 H -0.198 1.198 6 H -0.186 1.186 7 C -0.409 4.409 8 H 0.112 0.888 9 C -0.137 4.137 10 S 0.472 5.528 11 C -0.318 4.318 12 N -0.146 5.146 13 C -0.146 4.146 14 C -0.191 4.191 15 C -0.137 4.137 16 C -0.086 4.086 17 C -0.127 4.127 18 N -0.426 5.426 19 H 0.115 0.885 20 H 0.152 0.848 21 H 0.129 0.871 22 H 0.125 0.875 23 H 0.200 0.800 24 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 0.606 0.283 -0.001 0.669 hybrid contribution 2.805 -0.896 -0.001 2.945 sum 3.410 -0.613 -0.002 3.465 Atomic orbital electron populations 1.68539 1.07549 1.30931 1.34337 1.26189 0.95112 1.02641 0.93090 0.85806 0.79608 0.78234 0.80176 1.18588 1.19780 1.18584 1.18847 0.95161 0.88524 1.38333 0.88821 1.21047 0.95665 0.94594 1.02366 1.85010 1.02534 0.88303 1.76963 1.24741 0.91067 1.03186 1.12818 1.66911 1.35811 1.01964 1.09958 1.21975 0.94998 0.91310 1.06339 1.21402 0.94315 0.98801 1.04603 1.20901 0.97714 0.91794 1.03336 1.18330 0.93658 0.93067 1.03532 1.16056 0.84512 0.90390 1.21704 1.40881 1.02538 1.07566 1.91645 0.88530 0.84827 0.87096 0.87545 0.79966 0.78881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.37 10.57 55.56 0.59 -17.78 14 2 C 0.05 1.11 5.50 -17.26 -0.09 1.01 14 3 Si 0.94 16.84 29.56 -169.99 -5.03 11.81 14 4 H -0.26 -4.65 7.11 56.52 0.40 -4.25 14 5 H -0.27 -4.79 7.11 56.52 0.40 -4.39 14 6 H -0.26 -4.65 7.11 56.52 0.40 -4.25 14 7 C -0.37 -8.96 9.00 -38.43 -0.35 -9.31 14 8 H 0.09 2.07 6.72 -52.49 -0.35 1.72 14 9 C -0.01 -0.34 6.13 -39.23 -0.24 -0.58 14 10 S 0.21 5.40 20.09 -107.50 -2.16 3.24 14 11 C -0.07 -1.82 7.62 -16.18 -0.12 -1.95 14 12 N -0.44 -10.67 10.37 -11.66 -0.12 -10.80 14 13 C 0.02 0.46 11.18 -17.56 -0.20 0.27 14 14 C -0.17 -3.28 10.07 -39.64 -0.40 -3.68 14 15 C -0.11 -2.35 9.94 -38.46 -0.38 -2.73 14 16 C -0.07 -1.75 5.87 -106.96 -0.63 -2.37 14 17 C -0.02 -0.59 6.88 -84.04 -0.58 -1.16 14 18 N -0.88 -17.86 9.04 32.33 0.29 -17.57 14 19 H 0.30 6.36 8.30 -40.82 -0.34 6.02 14 20 H 0.13 2.31 8.06 -52.48 -0.42 1.89 14 21 H 0.11 1.74 8.06 -52.49 -0.42 1.32 14 22 H 0.11 1.96 7.49 -52.49 -0.39 1.57 14 23 H 0.38 6.70 8.09 -40.82 -0.33 6.37 14 24 H 0.38 7.25 7.50 -40.82 -0.31 6.95 14 LS Contribution 227.36 15.07 3.43 3.43 Total: -1.00 -27.87 227.36 -7.35 -35.22 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -1.36 Total: 12.95 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: -2.99 Total: -20.51 kcal Atomic # 7 Polarization: -46.90 SS G_CDS: 0.76 Total: -46.14 kcal Atomic # 14 Polarization: 16.84 SS G_CDS: -5.03 Total: 11.81 kcal Atomic # 16 Polarization: 5.40 SS G_CDS: -2.16 Total: 3.24 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -27.87 -7.35 -35.22 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261282084.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.787 kcal (2) G-P(sol) polarization free energy of solvation -27.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds