Wall clock time and date at job start Mon Mar 30 2020 02:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 5 5 H 1.08002 * 120.00299 * 240.00501 * 4 2 1 6 6 C 1.37884 * 119.99942 * 59.72060 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48504 * 109.47196 * 60.00645 * 8 6 4 10 10 H 1.48504 * 109.46887 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47679 * 300.00280 * 8 6 4 12 12 C 1.50700 * 109.47313 * 120.00230 * 2 1 3 13 13 C 1.34760 * 126.28996 * 60.01804 * 12 2 1 14 14 N 1.36234 * 108.22829 * 180.02562 * 13 12 2 15 15 C 1.46504 * 125.61172 * 180.02562 * 14 13 12 16 16 C 1.36720 * 108.77753 * 0.02562 * 14 13 12 17 17 C 1.34654 * 108.08990 * 359.71607 * 16 14 13 18 18 C 1.51283 * 110.43794 * 180.34400 * 17 16 14 19 19 C 1.54456 * 104.95852 * 17.05583 * 18 17 16 20 20 C 1.51411 * 141.64391 * 179.97438 * 16 14 13 21 21 H 1.09001 * 109.47192 * 59.99988 * 1 2 3 22 22 H 1.09004 * 109.47084 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 24 24 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 25 25 H 1.08004 * 125.89005 * 0.02562 * 13 12 2 26 26 H 1.08993 * 109.46943 * 90.02984 * 15 14 13 27 27 H 1.09007 * 109.46758 * 210.02604 * 15 14 13 28 28 H 1.08995 * 109.47027 * 330.02125 * 15 14 13 29 29 H 1.08998 * 110.34494 * 135.92646 * 18 17 16 30 30 H 1.09005 * 110.34420 * 258.08174 * 18 17 16 31 31 H 1.09000 * 110.93688 * 92.52739 * 19 18 17 32 32 H 1.08999 * 110.93834 * 216.17374 * 19 18 17 33 33 H 1.09000 * 110.34207 * 281.99356 * 20 16 14 34 34 H 1.09005 * 110.33371 * 44.23140 * 20 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6945 -0.2426 -2.4828 7 7 0.9385 0.8267 -2.6034 8 14 2.3109 -1.1277 -4.0079 9 1 1.8153 -2.5276 -4.0022 10 1 1.8119 -0.4304 -5.2204 11 1 3.7959 -1.1284 -4.0138 12 6 2.0324 -0.7104 1.2304 13 6 1.7865 -1.9917 1.5679 14 7 2.4168 -2.2501 2.7477 15 6 2.4017 -3.5300 3.4605 16 6 3.0658 -1.1186 3.1570 17 6 2.8506 -0.1577 2.2385 18 6 3.5551 1.1206 2.6363 19 6 4.5885 0.6917 3.7010 20 6 3.9366 -0.5884 4.2764 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 0.7011 1.1560 -3.4844 25 1 1.1922 -2.6930 1.0008 26 1 3.2378 -4.1430 3.1243 27 1 2.4907 -3.3501 4.5319 28 1 1.4652 -4.0488 3.2558 29 1 4.0585 1.5597 1.7749 30 1 2.8436 1.8293 3.0603 31 1 5.5528 0.4733 3.2422 32 1 4.6906 1.4535 4.4739 33 1 3.3295 -0.3569 5.1516 34 1 4.7091 -1.3139 4.5315 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261286675.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:26 Heat of formation + Delta-G solvation = 46.725593 kcal Electronic energy + Delta-G solvation = -14849.353793 eV Core-core repulsion = 12554.889769 eV Total energy + Delta-G solvation = -2294.464024 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.79847 -35.73100 -34.41571 -31.83376 -29.66181 -27.59534 -26.40529 -25.02605 -24.71052 -21.41051 -20.60155 -18.12781 -17.98250 -15.87524 -15.76731 -15.29852 -14.40352 -14.26984 -13.34150 -12.95165 -12.64301 -12.46634 -12.27306 -11.96860 -11.72094 -11.41973 -10.99066 -10.82626 -10.76839 -10.70306 -10.65216 -10.46061 -10.13194 -9.83277 -9.21220 -8.77877 -8.19982 -7.31166 -6.95190 -5.83663 -3.88460 2.95616 3.39552 3.43666 3.46490 3.47416 3.97414 4.56995 4.91803 5.08849 5.15478 5.32129 5.41589 5.46183 5.58356 5.72515 5.83194 5.92175 6.12161 6.16508 6.33895 6.56554 6.61908 6.75767 6.96344 7.11133 7.25024 7.43888 7.49436 7.84958 7.89145 8.06202 8.19944 8.32313 8.37613 8.67090 9.14783 9.74557 11.21789 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.032189 B = 0.008450 C = 0.007823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.646821 B = 3312.673920 C = 3578.465648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.101 3.899 3 H 0.030 0.970 4 C -0.496 4.496 5 H 0.053 0.947 6 C 0.058 3.942 7 N -0.894 5.894 8 Si 0.889 3.111 9 H -0.279 1.279 10 H -0.288 1.288 11 H -0.279 1.279 12 C -0.086 4.086 13 C -0.023 4.023 14 N -0.445 5.445 15 C 0.080 3.920 16 C -0.047 4.047 17 C -0.180 4.180 18 C -0.048 4.048 19 C -0.114 4.114 20 C -0.027 4.027 21 H 0.081 0.919 22 H 0.022 0.978 23 H 0.005 0.995 24 H 0.258 0.742 25 H 0.158 0.842 26 H 0.061 0.939 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.890 -4.133 12.497 13.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.082 3.918 3 H 0.048 0.952 4 C -0.535 4.535 5 H 0.071 0.929 6 C -0.142 4.142 7 N -0.533 5.533 8 Si 0.717 3.283 9 H -0.205 1.205 10 H -0.214 1.214 11 H -0.205 1.205 12 C -0.092 4.092 13 C -0.148 4.148 14 N -0.123 5.123 15 C -0.062 4.062 16 C -0.157 4.157 17 C -0.187 4.187 18 C -0.086 4.086 19 C -0.152 4.152 20 C -0.066 4.066 21 H 0.099 0.901 22 H 0.041 0.959 23 H 0.024 0.976 24 H 0.068 0.932 25 H 0.175 0.825 26 H 0.079 0.921 27 H 0.089 0.911 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.789 -4.368 12.525 13.796 hybrid contribution 0.243 -0.762 -0.948 1.240 sum 4.032 -5.130 11.577 13.289 Atomic orbital electron populations 1.21743 0.98433 0.98664 0.99729 1.17251 0.91874 0.94896 0.87785 0.95217 1.21185 1.30146 1.11986 0.90182 0.92912 1.24967 0.95379 0.95137 0.98732 1.69890 1.37203 1.23159 1.23086 0.86719 0.79151 0.79743 0.82698 1.20501 1.21418 1.20452 1.19746 0.99411 0.92953 0.97060 1.21425 1.06179 0.98333 0.88891 1.43176 1.41531 1.08356 1.19255 1.21809 1.02641 0.84880 0.96918 1.20746 1.05998 0.87700 1.01285 1.20259 1.05360 0.95620 0.97480 1.20366 0.95967 0.94711 0.97531 1.22364 0.98598 0.96039 0.98206 1.20471 0.95685 0.96325 0.94090 0.90076 0.95875 0.97576 0.93181 0.82487 0.92062 0.91058 0.90582 0.91491 0.91809 0.91191 0.91112 0.91408 0.92489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.29 8.85 37.16 0.33 -2.96 16 2 C 0.10 2.71 2.68 -92.92 -0.25 2.47 16 3 H 0.03 0.87 8.13 -51.93 -0.42 0.45 16 4 C -0.50 -14.24 8.41 -34.44 -0.29 -14.53 16 5 H 0.05 1.52 7.71 -52.49 -0.40 1.11 16 6 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 7 N -0.89 -26.36 11.31 55.43 0.63 -25.73 16 8 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 9 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 12 C -0.09 -2.05 4.82 -104.77 -0.51 -2.55 16 13 C -0.02 -0.48 10.83 -16.83 -0.18 -0.66 16 14 N -0.45 -8.10 3.15 -119.63 -0.38 -8.48 16 15 C 0.08 1.01 11.12 59.85 0.67 1.68 16 16 C -0.05 -0.86 7.54 -81.33 -0.61 -1.48 16 17 C -0.18 -3.82 6.87 -104.52 -0.72 -4.54 16 18 C -0.05 -0.84 6.78 -26.83 -0.18 -1.03 16 19 C -0.11 -1.55 7.15 -25.05 -0.18 -1.73 16 20 C -0.03 -0.39 6.80 -26.62 -0.18 -0.57 16 21 H 0.08 2.25 6.06 -51.93 -0.31 1.94 16 22 H 0.02 0.55 8.01 -51.93 -0.42 0.14 16 23 H 0.01 0.13 8.14 -51.93 -0.42 -0.30 16 24 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 25 H 0.16 3.18 8.06 -52.48 -0.42 2.76 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16 28 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 280.16 15.07 4.22 4.22 Total: -1.00 -31.74 280.16 -8.09 -39.83 By element: Atomic # 1 Polarization: 2.88 SS G_CDS: -5.34 Total: -2.46 kcal Atomic # 6 Polarization: -22.15 SS G_CDS: -2.20 Total: -24.35 kcal Atomic # 7 Polarization: -34.46 SS G_CDS: 0.25 Total: -34.21 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -31.74 -8.09 -39.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261286675.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.553 kcal (2) G-P(sol) polarization free energy of solvation -31.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds