Wall clock time and date at job start Mon Mar 30 2020 02:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.50706 * 109.47430 * 240.00158 * 2 1 3 5 5 H 1.07999 * 120.00193 * 240.00552 * 4 2 1 6 6 C 1.37879 * 119.99398 * 59.99633 * 4 2 1 7 7 N 1.31514 * 119.99350 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 0.02562 * 6 4 2 9 9 H 1.48493 * 109.47326 * 270.00340 * 8 6 4 10 10 H 1.48506 * 109.46545 * 30.00090 * 8 6 4 11 11 H 1.48498 * 109.47210 * 149.99801 * 8 6 4 12 12 C 1.50699 * 109.47592 * 120.00047 * 2 1 3 13 13 C 1.38318 * 119.95958 * 59.72726 * 12 2 1 14 14 C 1.38267 * 120.14553 * 179.73066 * 13 12 2 15 15 C 1.38117 * 120.07591 * 0.54542 * 14 13 12 16 16 C 1.38884 * 119.92719 * 359.72348 * 15 14 13 17 17 N 1.39677 * 120.07958 * 179.97438 * 16 15 14 18 18 C 1.46488 * 120.00529 * 180.02562 * 17 16 15 19 19 C 1.46504 * 119.99662 * 0.02562 * 17 16 15 20 20 C 1.38080 * 119.96718 * 240.00205 * 12 2 1 21 21 H 1.09000 * 109.47140 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47045 * 299.99907 * 1 2 3 23 23 H 1.09001 * 109.46922 * 59.99700 * 1 2 3 24 24 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 25 25 H 1.07997 * 119.92220 * 359.97438 * 13 12 2 26 26 H 1.08001 * 119.95672 * 180.27595 * 14 13 12 27 27 H 1.07999 * 120.03607 * 179.71035 * 15 14 13 28 28 H 1.09007 * 109.47155 * 89.99880 * 18 17 16 29 29 H 1.09007 * 109.47529 * 209.99976 * 18 17 16 30 30 H 1.09002 * 109.47362 * 330.00237 * 18 17 16 31 31 H 1.08998 * 109.46916 * 89.99898 * 19 17 16 32 32 H 1.08995 * 109.47555 * 210.00232 * 19 17 16 33 33 H 1.09001 * 109.47125 * 330.00510 * 19 17 16 34 34 H 1.07998 * 120.03727 * 0.02562 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2392 -2.4827 7 7 2.1373 -0.8595 -3.5565 8 14 0.6258 1.2799 -2.6541 9 1 -0.8021 0.8745 -2.6992 10 1 0.8491 2.1773 -1.4922 11 1 0.9771 1.9954 -3.9070 12 6 2.0324 -0.7104 1.2304 13 6 1.6932 -2.0330 1.4513 14 6 2.1566 -2.6902 2.5761 15 6 2.9510 -2.0241 3.4888 16 6 3.2889 -0.6945 3.2729 17 7 4.0916 -0.0177 4.1941 18 6 4.4467 1.3849 3.9650 19 6 4.5786 -0.7107 5.3895 20 6 2.8262 -0.0386 2.1388 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.9026 -0.5282 -4.4376 25 1 1.0682 -2.5546 0.7417 26 1 1.8935 -3.7242 2.7433 27 1 3.3087 -2.5367 4.3695 28 1 3.6953 2.0292 4.4219 29 1 5.4205 1.5906 4.4096 30 1 4.4883 1.5789 2.8932 31 1 5.5386 -1.1789 5.1723 32 1 4.6995 0.0064 6.2014 33 1 3.8599 -1.4754 5.6842 34 1 3.0867 0.9955 1.9682 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261287589.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:17 Heat of formation + Delta-G solvation = 15.324230 kcal Electronic energy + Delta-G solvation = -14634.157415 eV Core-core repulsion = 12338.331725 eV Total energy + Delta-G solvation = -2295.825690 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.53720 -37.68253 -35.72160 -33.63574 -31.34529 -30.23663 -28.76620 -27.07436 -25.60751 -23.91395 -22.37730 -20.61249 -18.65597 -18.07687 -16.71377 -16.56449 -16.18489 -15.85230 -15.33308 -14.97012 -14.52951 -14.30052 -14.01514 -13.59350 -13.39943 -13.37519 -12.84377 -12.83732 -12.76874 -12.47005 -12.09407 -11.93393 -11.59632 -11.17261 -11.11976 -10.72909 -10.52157 -9.43693 -8.28361 -8.05393 -6.31619 0.71242 0.86755 1.31441 1.36527 1.47700 2.33564 2.35075 3.05092 3.15887 4.00857 4.14348 4.28887 4.37339 4.46468 4.56598 4.57983 4.71073 4.73348 4.78109 4.84515 4.89210 4.93938 4.97543 5.04418 5.16260 5.33899 5.43811 5.54639 5.65139 5.80974 6.04669 6.18661 6.35498 6.49133 6.67802 6.75667 7.32285 8.88829 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.038796 B = 0.007724 C = 0.007175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.553711 B = 3623.961872 C = 3901.297385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.038 3.962 3 H 0.028 0.972 4 C -0.506 4.506 5 H 0.031 0.969 6 C 0.011 3.989 7 N -0.950 5.950 8 Si 0.952 3.048 9 H -0.265 1.265 10 H -0.248 1.248 11 H -0.298 1.298 12 C -0.011 4.011 13 C -0.186 4.186 14 C -0.076 4.076 15 C -0.216 4.216 16 C 0.206 3.794 17 N -0.648 5.648 18 C 0.090 3.910 19 C 0.092 3.908 20 C -0.218 4.218 21 H 0.053 0.947 22 H 0.058 0.942 23 H 0.034 0.966 24 H 0.266 0.734 25 H 0.101 0.899 26 H 0.140 0.860 27 H 0.144 0.856 28 H 0.052 0.948 29 H 0.087 0.913 30 H 0.054 0.946 31 H 0.049 0.951 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.685 2.875 18.236 18.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.019 3.981 3 H 0.046 0.954 4 C -0.544 4.544 5 H 0.049 0.951 6 C -0.186 4.186 7 N -0.591 5.591 8 Si 0.779 3.221 9 H -0.191 1.191 10 H -0.172 1.172 11 H -0.226 1.226 12 C -0.012 4.012 13 C -0.206 4.206 14 C -0.094 4.094 15 C -0.238 4.238 16 C 0.104 3.896 17 N -0.361 5.361 18 C -0.052 4.052 19 C -0.050 4.050 20 C -0.240 4.240 21 H 0.072 0.928 22 H 0.077 0.923 23 H 0.052 0.948 24 H 0.075 0.925 25 H 0.120 0.880 26 H 0.158 0.842 27 H 0.161 0.839 28 H 0.071 0.929 29 H 0.105 0.895 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.103 0.897 33 H 0.091 0.909 34 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 1.817 2.976 18.212 18.543 hybrid contribution -0.305 0.396 -1.001 1.119 sum 1.512 3.372 17.211 17.604 Atomic orbital electron populations 1.22048 0.96719 1.01295 0.99457 1.18252 0.93336 0.95325 0.91197 0.95351 1.21184 1.30806 1.12185 0.90212 0.95064 1.25880 0.97364 1.00081 0.95274 1.70052 1.47835 1.42625 0.98566 0.85798 0.79137 0.79957 0.77234 1.19106 1.17167 1.22579 1.19836 0.93597 0.94323 0.93448 1.20832 1.05462 0.94954 0.99355 1.21100 0.95618 0.99835 0.92894 1.20782 1.06534 0.93512 1.02934 1.17896 0.90679 0.91931 0.89099 1.46493 1.54454 1.11866 1.23268 1.21704 1.01003 0.80826 1.01699 1.21753 0.99066 0.98089 0.86083 1.20653 1.06123 1.00829 0.96442 0.92789 0.92254 0.94795 0.92540 0.88043 0.84217 0.83873 0.92909 0.89464 0.92704 0.93273 0.89658 0.90939 0.86480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.03 8.48 71.98 0.61 -5.42 16 2 C 0.04 1.84 2.07 -12.29 -0.03 1.82 16 3 H 0.03 1.39 6.93 -2.39 -0.02 1.37 16 4 C -0.51 -29.89 8.83 25.60 0.23 -29.67 16 5 H 0.03 2.07 7.85 -2.91 -0.02 2.04 16 6 C 0.01 0.63 5.45 84.66 0.46 1.09 16 7 N -0.95 -60.74 13.96 21.45 0.30 -60.44 16 8 Si 0.95 45.90 24.37 68.60 1.67 47.57 16 9 H -0.27 -12.11 6.87 99.48 0.68 -11.43 16 10 H -0.25 -11.09 6.53 99.48 0.65 -10.44 16 11 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 12 C -0.01 -0.50 4.73 -19.88 -0.09 -0.60 16 13 C -0.19 -7.73 8.71 22.30 0.19 -7.54 16 14 C -0.08 -2.56 10.04 22.25 0.22 -2.34 16 15 C -0.22 -6.62 9.21 22.40 0.21 -6.41 16 16 C 0.21 6.79 6.55 38.21 0.25 7.04 16 17 N -0.65 -16.60 3.41 -747.29 -2.55 -19.14 16 18 C 0.09 1.95 10.19 127.77 1.30 3.25 16 19 C 0.09 1.62 10.19 127.77 1.30 2.92 16 20 C -0.22 -8.48 8.83 22.40 0.20 -8.29 16 21 H 0.05 2.32 7.37 -2.39 -0.02 2.31 16 22 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 23 H 0.03 1.50 3.27 -2.39 -0.01 1.49 16 24 H 0.27 15.86 8.31 -92.70 -0.77 15.09 16 25 H 0.10 4.45 7.56 -2.91 -0.02 4.43 16 26 H 0.14 3.79 8.06 -2.91 -0.02 3.77 16 27 H 0.14 3.40 6.14 -2.91 -0.02 3.39 16 28 H 0.05 1.03 8.14 -2.38 -0.02 1.02 16 29 H 0.09 1.39 8.07 -2.38 -0.02 1.37 16 30 H 0.05 1.36 6.20 -2.39 -0.01 1.35 16 31 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.08 1.08 8.07 -2.39 -0.02 1.06 16 33 H 0.07 1.19 6.20 -2.39 -0.01 1.18 16 34 H 0.12 4.34 6.03 -2.91 -0.02 4.32 16 Total: -1.00 -69.67 270.00 5.28 -64.39 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: 1.00 Total: 11.77 kcal Atomic # 6 Polarization: -49.00 SS G_CDS: 4.85 Total: -44.14 kcal Atomic # 7 Polarization: -77.34 SS G_CDS: -2.25 Total: -79.58 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 1.67 Total: 47.57 kcal Total: -69.67 5.28 -64.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261287589.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.715 kcal (2) G-P(sol) polarization free energy of solvation -69.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds