Wall clock time and date at job start Mon Mar 30 2020 02:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31648 * 120.15241 * 2 1 4 4 N 1.28138 * 122.66135 * 179.97438 * 3 2 1 5 5 C 1.31256 * 123.03180 * 359.97438 * 4 3 2 6 6 C 1.41792 * 119.60669 * 0.02562 * 5 4 3 7 7 C 1.39396 * 130.31052 * 179.97438 * 6 5 4 8 8 C 1.37094 * 114.95369 * 180.02562 * 7 6 5 9 9 C 1.39971 * 124.80264 * 180.02562 * 8 7 6 10 10 H 1.08002 * 119.99690 * 10.57416 * 9 8 7 11 11 C 1.40271 * 119.99761 * 190.57875 * 9 8 7 12 12 N 1.30697 * 119.99849 * 175.08505 * 11 9 8 13 13 Si 1.86798 * 120.00045 * 355.08680 * 11 9 8 14 14 H 1.48509 * 109.46868 * 179.97438 * 13 11 9 15 15 H 1.48491 * 109.47096 * 299.99708 * 13 11 9 16 16 H 1.48501 * 109.47118 * 60.00171 * 13 11 9 17 17 S 1.75552 * 110.39358 * 0.27075 * 8 7 6 18 18 C 1.39632 * 120.14913 * 179.97438 * 2 1 3 19 19 H 1.09007 * 109.46751 * 270.02053 * 1 2 3 20 20 H 1.09001 * 109.47152 * 30.01662 * 1 2 3 21 21 H 1.08998 * 109.47606 * 150.02438 * 1 2 3 22 22 H 1.08001 * 120.20042 * 180.02562 * 5 4 3 23 23 H 1.08001 * 122.52218 * 0.06089 * 7 6 5 24 24 H 0.97005 * 119.99798 * 359.87394 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1683 1.1383 0.0000 4 7 3.4484 1.1944 0.0005 5 6 4.2114 0.1264 0.0015 6 6 3.6155 -1.1602 0.0016 7 6 4.2010 -2.4252 0.0021 8 6 3.3159 -3.4722 0.0014 9 6 3.6779 -4.8243 0.0023 10 1 4.7055 -5.1080 0.1752 11 6 2.7060 -5.8106 -0.2215 12 7 3.0584 -7.0656 -0.3164 13 14 0.9081 -5.3305 -0.3839 14 1 0.0896 -6.5479 -0.6152 15 1 0.4597 -4.6617 0.8638 16 1 0.7457 -4.4003 -1.5301 17 16 1.6644 -2.8771 -0.0076 18 6 2.2083 -1.2074 0.0005 19 1 -0.3633 0.0004 1.0278 20 1 -0.3633 0.8898 -0.5141 21 1 -0.3634 -0.8902 -0.5134 22 1 5.2867 0.2269 0.0023 23 1 5.2713 -2.5697 0.0035 24 1 3.9922 -7.3147 -0.2339 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261291659.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:06 Heat of formation + Delta-G solvation = 32.641458 kcal Electronic energy + Delta-G solvation = -12162.867218 eV Core-core repulsion = 9973.453230 eV Total energy + Delta-G solvation = -2189.413987 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 220.037 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.80182 -35.84518 -34.10711 -32.94562 -30.40437 -27.71319 -25.71515 -23.87299 -21.60294 -19.50898 -19.27110 -16.82495 -16.45221 -15.51742 -14.42927 -14.34301 -13.85370 -13.54130 -12.87234 -12.58643 -12.38861 -12.27455 -12.17222 -11.62291 -10.86868 -10.80658 -10.38216 -10.08057 -9.89778 -9.34895 -9.11396 -8.60871 -8.27958 -8.04352 -7.08307 -5.10972 1.55373 1.86311 2.17573 2.73119 2.80146 2.87829 3.25072 3.33599 3.56771 4.37827 4.70722 4.93790 5.44900 5.53124 5.90424 5.93574 5.95621 6.08635 6.48549 6.61547 6.75371 6.88282 6.95814 7.06581 7.37902 7.52323 7.69118 7.95207 9.28754 9.86410 Molecular weight = 220.04amu Principal moments of inertia in cm(-1) A = 0.045188 B = 0.011454 C = 0.009202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.490794 B = 2443.889217 C = 3042.060295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.135 3.865 3 N -0.332 5.332 4 N -0.257 5.257 5 C 0.016 3.984 6 C 0.008 3.992 7 C -0.343 4.343 8 C 0.061 3.939 9 C -0.407 4.407 10 H 0.103 0.897 11 C 0.047 3.953 12 N -0.767 5.767 13 Si 0.913 3.087 14 H -0.218 1.218 15 H -0.197 1.197 16 H -0.196 1.196 17 S 0.010 5.990 18 C -0.271 4.271 19 H 0.075 0.925 20 H 0.075 0.925 21 H 0.069 0.931 22 H 0.153 0.847 23 H 0.120 0.880 24 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.077 0.712 0.044 4.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.014 4.014 3 N -0.172 5.172 4 N -0.091 5.091 5 C -0.160 4.160 6 C -0.007 4.007 7 C -0.369 4.369 8 C -0.058 4.058 9 C -0.443 4.443 10 H 0.121 0.879 11 C -0.180 4.180 12 N -0.386 5.386 13 Si 0.735 3.265 14 H -0.141 1.141 15 H -0.123 1.123 16 H -0.121 1.121 17 S 0.263 5.737 18 C -0.392 4.392 19 H 0.094 0.906 20 H 0.094 0.906 21 H 0.088 0.912 22 H 0.170 0.830 23 H 0.138 0.862 24 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.965 1.122 -0.224 7.058 hybrid contribution 3.375 -0.574 0.304 3.437 sum -3.589 0.549 0.081 3.632 Atomic orbital electron populations 1.20574 0.89298 1.02805 1.02680 1.21906 0.97068 0.88629 0.93763 1.72487 1.01442 1.23169 1.20119 1.71988 0.99786 1.28051 1.09257 1.23903 1.00563 0.88278 1.03301 1.18763 0.92194 0.94994 0.94779 1.19468 0.98676 0.88812 1.29993 1.21488 0.92358 0.96937 0.95005 1.20653 0.98974 0.89694 1.34935 0.87892 1.27532 1.07450 0.92349 0.90715 1.70505 1.23321 1.17909 1.26895 0.84612 0.73990 0.82747 0.85179 1.14134 1.12317 1.12111 1.84432 1.09707 0.97734 1.81809 1.23421 0.97412 0.98841 1.19489 0.90625 0.90624 0.91229 0.83012 0.86188 0.89027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.58 10.11 36.01 0.36 -1.21 14 2 C 0.14 2.92 6.90 -82.15 -0.57 2.36 14 3 N -0.33 -7.64 11.38 33.75 0.38 -7.25 14 4 N -0.26 -5.94 11.42 31.10 0.36 -5.58 14 5 C 0.02 0.36 11.44 -16.44 -0.19 0.17 14 6 C 0.01 0.19 5.91 -107.14 -0.63 -0.45 14 7 C -0.34 -8.01 10.17 -39.57 -0.40 -8.41 14 8 C 0.06 1.44 5.96 -39.35 -0.23 1.20 14 9 C -0.41 -9.47 9.71 -38.17 -0.37 -9.84 14 10 H 0.10 2.40 8.06 -52.49 -0.42 1.98 14 11 C 0.05 1.04 5.52 -17.27 -0.10 0.94 14 12 N -0.77 -17.29 13.65 55.57 0.76 -16.53 14 13 Si 0.91 17.13 24.49 -169.99 -4.16 12.97 14 14 H -0.22 -3.85 7.11 56.52 0.40 -3.45 14 15 H -0.20 -3.51 6.29 60.70 0.38 -3.13 14 16 H -0.20 -3.58 6.35 59.10 0.38 -3.20 14 17 S 0.01 0.23 14.76 -107.50 -1.59 -1.36 14 18 C -0.27 -6.20 6.35 -38.10 -0.24 -6.44 14 19 H 0.08 1.13 8.14 -51.92 -0.42 0.71 14 20 H 0.07 1.13 8.14 -51.93 -0.42 0.71 14 21 H 0.07 1.08 7.72 -51.93 -0.40 0.68 14 22 H 0.15 2.79 8.06 -52.49 -0.42 2.37 14 23 H 0.12 2.63 8.06 -52.49 -0.42 2.21 14 24 H 0.30 6.41 8.72 -40.82 -0.36 6.05 14 LS Contribution 224.41 15.07 3.38 3.38 Total: -1.00 -26.18 224.41 -4.95 -31.13 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -1.71 Total: 4.92 kcal Atomic # 6 Polarization: -19.31 SS G_CDS: -2.37 Total: -21.68 kcal Atomic # 7 Polarization: -30.86 SS G_CDS: 1.50 Total: -29.36 kcal Atomic # 14 Polarization: 17.13 SS G_CDS: -4.16 Total: 12.97 kcal Atomic # 16 Polarization: 0.23 SS G_CDS: -1.59 Total: -1.36 kcal Total LS contribution 3.38 Total: 3.38 kcal Total: -26.18 -4.95 -31.13 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261291659.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.773 kcal (2) G-P(sol) polarization free energy of solvation -26.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds