Wall clock time and date at job start Mon Mar 30 2020 02:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31648 * 120.15241 * 2 1 4 4 N 1.28138 * 122.66135 * 179.97438 * 3 2 1 5 5 C 1.31256 * 123.03180 * 359.97438 * 4 3 2 6 6 C 1.41792 * 119.60669 * 0.02562 * 5 4 3 7 7 C 1.39396 * 130.31052 * 179.97438 * 6 5 4 8 8 C 1.37094 * 114.95369 * 180.02562 * 7 6 5 9 9 C 1.39971 * 124.80264 * 180.02562 * 8 7 6 10 10 H 1.08002 * 119.99690 * 10.57416 * 9 8 7 11 11 C 1.40271 * 119.99761 * 190.57875 * 9 8 7 12 12 N 1.30697 * 119.99849 * 175.08505 * 11 9 8 13 13 Si 1.86798 * 120.00045 * 355.08680 * 11 9 8 14 14 H 1.48509 * 109.46868 * 179.97438 * 13 11 9 15 15 H 1.48491 * 109.47096 * 299.99708 * 13 11 9 16 16 H 1.48501 * 109.47118 * 60.00171 * 13 11 9 17 17 S 1.75552 * 110.39358 * 0.27075 * 8 7 6 18 18 C 1.39632 * 120.14913 * 179.97438 * 2 1 3 19 19 H 1.09007 * 109.46751 * 270.02053 * 1 2 3 20 20 H 1.09001 * 109.47152 * 30.01662 * 1 2 3 21 21 H 1.08998 * 109.47606 * 150.02438 * 1 2 3 22 22 H 1.08001 * 120.20042 * 180.02562 * 5 4 3 23 23 H 1.08001 * 122.52218 * 0.06089 * 7 6 5 24 24 H 0.97005 * 119.99798 * 359.87394 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1683 1.1383 0.0000 4 7 3.4484 1.1944 0.0005 5 6 4.2114 0.1264 0.0015 6 6 3.6155 -1.1602 0.0016 7 6 4.2010 -2.4252 0.0021 8 6 3.3159 -3.4722 0.0014 9 6 3.6779 -4.8243 0.0023 10 1 4.7055 -5.1080 0.1752 11 6 2.7060 -5.8106 -0.2215 12 7 3.0584 -7.0656 -0.3164 13 14 0.9081 -5.3305 -0.3839 14 1 0.0896 -6.5479 -0.6152 15 1 0.4597 -4.6617 0.8638 16 1 0.7457 -4.4003 -1.5301 17 16 1.6644 -2.8771 -0.0076 18 6 2.2083 -1.2074 0.0005 19 1 -0.3633 0.0004 1.0278 20 1 -0.3633 0.8898 -0.5141 21 1 -0.3634 -0.8902 -0.5134 22 1 5.2867 0.2269 0.0023 23 1 5.2713 -2.5697 0.0035 24 1 3.9922 -7.3147 -0.2339 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261291659.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:05 Heat of formation + Delta-G solvation = 16.753529 kcal Electronic energy + Delta-G solvation = -12163.556170 eV Core-core repulsion = 9973.453230 eV Total energy + Delta-G solvation = -2190.102940 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 220.037 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.51314 -37.58971 -35.82671 -34.53338 -32.14591 -29.27137 -27.38463 -25.59834 -23.27904 -21.24602 -20.97620 -18.51938 -18.14272 -17.19232 -16.06942 -15.94518 -15.48996 -15.18537 -14.60323 -14.17960 -13.97397 -13.75123 -13.57130 -13.14906 -12.50990 -12.43471 -12.06491 -11.71316 -11.57621 -11.01095 -10.76015 -10.29844 -10.05124 -9.78459 -8.76294 -6.89858 -0.19033 0.15534 0.57034 1.00366 1.19528 1.34631 1.61859 1.77963 2.07416 2.65655 2.96713 3.38524 3.82590 3.93952 4.24893 4.43683 4.66289 4.70510 4.89357 5.00717 5.08139 5.14175 5.21629 5.38392 5.64821 5.76390 5.90327 6.21726 7.56311 8.13686 Molecular weight = 220.04amu Principal moments of inertia in cm(-1) A = 0.045188 B = 0.011454 C = 0.009202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.490794 B = 2443.889217 C = 3042.060295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.132 3.868 3 N -0.348 5.348 4 N -0.275 5.275 5 C 0.018 3.982 6 C -0.013 4.013 7 C -0.357 4.357 8 C 0.041 3.959 9 C -0.427 4.427 10 H 0.087 0.913 11 C 0.023 3.977 12 N -0.780 5.780 13 Si 0.923 3.077 14 H -0.195 1.195 15 H -0.179 1.179 16 H -0.185 1.185 17 S 0.057 5.943 18 C -0.297 4.297 19 H 0.096 0.904 20 H 0.092 0.908 21 H 0.082 0.918 22 H 0.181 0.819 23 H 0.122 0.878 24 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.832 1.066 0.008 5.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.017 4.017 3 N -0.188 5.188 4 N -0.107 5.107 5 C -0.159 4.159 6 C -0.028 4.028 7 C -0.383 4.383 8 C -0.078 4.078 9 C -0.463 4.463 10 H 0.105 0.895 11 C -0.201 4.201 12 N -0.400 5.400 13 Si 0.740 3.260 14 H -0.116 1.116 15 H -0.105 1.105 16 H -0.110 1.110 17 S 0.310 5.690 18 C -0.417 4.417 19 H 0.114 0.886 20 H 0.111 0.889 21 H 0.101 0.899 22 H 0.198 0.802 23 H 0.140 0.860 24 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.701 1.480 -0.257 8.830 hybrid contribution 3.965 -0.644 0.323 4.030 sum -4.736 0.836 0.066 4.810 Atomic orbital electron populations 1.20731 0.85793 1.04303 1.04404 1.22582 0.99372 0.87638 0.92130 1.72442 1.01609 1.24141 1.20637 1.71959 1.00220 1.28585 1.09974 1.24313 1.01910 0.87572 1.02148 1.18998 0.92975 0.95422 0.95441 1.19627 0.99089 0.89147 1.30406 1.21675 0.94085 0.96924 0.95132 1.20688 0.98838 0.90323 1.36404 0.89475 1.28497 1.09940 0.91830 0.89789 1.70551 1.23332 1.18250 1.27828 0.84575 0.71203 0.84088 0.86184 1.11646 1.10507 1.10997 1.84157 1.07534 0.96192 1.81076 1.23874 0.97703 1.00417 1.19721 0.88603 0.88930 0.89935 0.80244 0.85985 0.89298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.80 10.11 71.24 0.72 -2.08 14 2 C 0.13 5.42 6.90 42.92 0.30 5.72 14 3 N -0.35 -15.47 11.38 -47.14 -0.54 -16.00 14 4 N -0.27 -12.33 11.42 -55.51 -0.63 -12.96 14 5 C 0.02 0.75 11.44 85.66 0.98 1.73 14 6 C -0.01 -0.59 5.91 -21.50 -0.13 -0.71 14 7 C -0.36 -16.57 10.17 22.28 0.23 -16.34 14 8 C 0.04 1.90 5.96 22.42 0.13 2.04 14 9 C -0.43 -19.98 9.71 23.18 0.23 -19.75 14 10 H 0.09 4.20 8.06 -2.91 -0.02 4.18 14 11 C 0.02 1.01 5.52 85.36 0.47 1.49 14 12 N -0.78 -34.92 13.65 21.89 0.30 -34.62 14 13 Si 0.92 32.02 24.49 68.60 1.68 33.70 14 14 H -0.19 -6.12 7.11 99.48 0.71 -5.41 14 15 H -0.18 -5.75 6.29 96.82 0.61 -5.14 14 16 H -0.19 -6.15 6.35 97.84 0.62 -5.52 14 17 S 0.06 2.34 14.76 -56.49 -0.83 1.51 14 18 C -0.30 -13.06 6.35 23.23 0.15 -12.91 14 19 H 0.10 2.49 8.14 -2.38 -0.02 2.47 14 20 H 0.09 2.44 8.14 -2.39 -0.02 2.42 14 21 H 0.08 2.24 7.72 -2.39 -0.02 2.22 14 22 H 0.18 6.36 8.06 -2.91 -0.02 6.34 14 23 H 0.12 5.42 8.06 -2.91 -0.02 5.39 14 24 H 0.30 12.87 8.72 -92.70 -0.81 12.06 14 Total: -1.00 -54.24 224.41 4.05 -50.19 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: 1.00 Total: 19.01 kcal Atomic # 6 Polarization: -43.89 SS G_CDS: 3.07 Total: -40.82 kcal Atomic # 7 Polarization: -62.71 SS G_CDS: -0.87 Total: -63.58 kcal Atomic # 14 Polarization: 32.02 SS G_CDS: 1.68 Total: 33.70 kcal Atomic # 16 Polarization: 2.34 SS G_CDS: -0.83 Total: 1.51 kcal Total: -54.24 4.05 -50.19 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261291659.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.945 kcal (2) G-P(sol) polarization free energy of solvation -54.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds