Wall clock time and date at job start Mon Mar 30 2020 02:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53010 * 109.47137 * 2 1 4 4 H 1.08993 * 109.46697 * 54.99933 * 3 2 1 5 5 C 1.52996 * 109.46907 * 175.00102 * 3 2 1 6 6 N 1.46498 * 109.46722 * 294.99783 * 3 2 1 7 7 C 1.39683 * 119.99819 * 155.00096 * 6 3 2 8 8 C 1.39330 * 119.95113 * 359.97438 * 7 6 3 9 9 C 1.38482 * 120.42521 * 179.97438 * 8 7 6 10 10 C 1.37689 * 120.32410 * 359.97438 * 9 8 7 11 11 C 1.40754 * 119.89268 * 0.02562 * 10 9 8 12 12 C 1.41400 * 120.20643 * 179.97438 * 11 10 9 13 13 H 1.08007 * 120.00077 * 24.33191 * 12 11 10 14 14 C 1.39931 * 120.00030 * 204.32260 * 12 11 10 15 15 N 1.30825 * 120.00044 * 17.74385 * 14 12 11 16 16 Si 1.86799 * 120.00071 * 197.73606 * 14 12 11 17 17 H 1.48495 * 109.47071 * 94.69776 * 16 14 12 18 18 H 1.48508 * 109.47228 * 214.69567 * 16 14 12 19 19 H 1.48496 * 109.47389 * 334.69660 * 16 14 12 20 20 C 1.38281 * 119.95093 * 179.73105 * 7 6 3 21 21 H 1.09001 * 109.46927 * 300.00066 * 1 2 3 22 22 H 1.08997 * 109.47102 * 59.99988 * 1 2 3 23 23 H 1.09000 * 109.47099 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47610 * 239.99628 * 2 1 3 25 25 H 1.09010 * 109.47336 * 119.99419 * 2 1 3 26 26 H 1.08999 * 109.46873 * 180.02562 * 5 3 2 27 27 H 1.09008 * 109.47238 * 299.99400 * 5 3 2 28 28 H 1.09001 * 109.47284 * 59.99578 * 5 3 2 29 29 H 0.96998 * 120.00350 * 335.00091 * 6 3 2 30 30 H 1.08004 * 119.79232 * 359.97438 * 8 7 6 31 31 H 1.08003 * 119.83885 * 179.97438 * 9 8 7 32 32 H 1.07994 * 120.05138 * 179.97438 * 10 9 8 33 33 H 0.96993 * 120.00616 * 179.97438 * 15 14 12 34 34 H 1.08001 * 120.16168 * 359.97058 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5648 1.4444 0.1257 6 7 1.6524 2.0975 -1.2518 7 6 1.5210 3.4872 -1.3014 8 6 1.7582 4.2495 -0.1596 9 6 1.6313 5.6280 -0.1978 10 6 1.2694 6.2607 -1.3659 11 6 1.0266 5.5037 -2.5275 12 6 0.6541 6.1466 -3.7306 13 1 0.9226 7.1795 -3.8965 14 6 -0.0623 5.4445 -4.7062 15 7 -0.6845 4.3377 -4.3911 16 14 -0.1304 6.0877 -6.4587 17 1 0.9314 5.4361 -7.2667 18 1 -1.4589 5.7810 -7.0473 19 1 0.0820 7.5574 -6.4552 20 6 1.1605 4.1048 -2.4850 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5139 -0.8899 25 1 1.8934 -0.5138 0.8901 26 1 3.9281 2.4720 0.1262 27 1 3.8532 0.9571 1.0572 28 1 3.9994 0.9052 -0.7161 29 1 1.4871 1.5660 -2.0463 30 1 2.0429 3.7623 0.7614 31 1 1.8170 6.2097 0.6931 32 1 1.1713 7.3359 -1.3906 33 1 -1.1814 3.8511 -5.0672 34 1 0.9807 3.5152 -3.3718 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306335254.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:08 Heat of formation + Delta-G solvation = -13.648027 kcal Electronic energy + Delta-G solvation = -14592.498127 eV Core-core repulsion = 12295.416106 eV Total energy + Delta-G solvation = -2297.082021 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.84469 -37.75297 -35.41836 -33.51564 -31.36143 -30.80882 -28.65109 -27.09551 -24.52171 -23.13615 -22.15148 -21.05194 -19.07747 -17.66267 -16.72435 -16.48619 -16.24132 -15.12960 -14.96671 -14.62884 -14.30877 -14.17438 -13.92906 -13.62667 -13.26038 -12.90966 -12.72726 -12.62449 -12.56156 -12.08738 -12.08663 -11.89314 -11.56296 -11.41690 -11.23215 -11.04965 -10.46155 -9.23582 -8.61105 -7.85242 -6.31037 1.09426 1.35796 1.38199 1.51591 1.59215 2.23285 2.81542 2.89538 3.87415 3.89708 4.21010 4.24851 4.50759 4.55199 4.74939 4.78652 4.82273 4.93604 5.01173 5.06613 5.09012 5.20959 5.23971 5.34046 5.37818 5.46699 5.51505 5.64264 5.99431 6.13511 6.23463 6.30363 6.60606 6.96968 7.07570 7.11921 7.29538 8.39347 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.031602 B = 0.007951 C = 0.006890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.812852 B = 3520.643550 C = 4062.678176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.120 4.120 3 C 0.148 3.852 4 H 0.064 0.936 5 C -0.160 4.160 6 N -0.747 5.747 7 C 0.225 3.775 8 C -0.302 4.302 9 C -0.064 4.064 10 C -0.288 4.288 11 C 0.107 3.893 12 C -0.505 4.505 13 H 0.070 0.930 14 C 0.037 3.963 15 N -0.822 5.822 16 Si 0.980 3.020 17 H -0.263 1.263 18 H -0.267 1.267 19 H -0.260 1.260 20 C -0.262 4.262 21 H 0.048 0.952 22 H 0.034 0.966 23 H 0.069 0.931 24 H 0.068 0.932 25 H 0.096 0.904 26 H 0.038 0.962 27 H 0.082 0.918 28 H 0.054 0.946 29 H 0.389 0.611 30 H 0.113 0.887 31 H 0.117 0.883 32 H 0.088 0.912 33 H 0.284 0.716 34 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.390 -8.366 4.955 10.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C 0.043 3.957 4 H 0.082 0.918 5 C -0.219 4.219 6 N -0.378 5.378 7 C 0.124 3.876 8 C -0.325 4.325 9 C -0.082 4.082 10 C -0.309 4.309 11 C 0.104 3.896 12 C -0.535 4.535 13 H 0.088 0.912 14 C -0.178 4.178 15 N -0.448 5.448 16 Si 0.801 3.199 17 H -0.188 1.188 18 H -0.192 1.192 19 H -0.184 1.184 20 C -0.286 4.286 21 H 0.068 0.932 22 H 0.053 0.947 23 H 0.088 0.912 24 H 0.087 0.913 25 H 0.114 0.886 26 H 0.058 0.942 27 H 0.100 0.900 28 H 0.073 0.927 29 H 0.223 0.777 30 H 0.131 0.869 31 H 0.135 0.865 32 H 0.106 0.894 33 H 0.095 0.905 34 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.281 -8.596 5.082 10.511 hybrid contribution -0.325 0.363 -1.154 1.253 sum 2.955 -8.233 3.928 9.589 Atomic orbital electron populations 1.21724 0.96064 1.01713 1.01185 1.21758 0.95874 0.94518 1.03609 1.20967 0.94464 0.93534 0.86782 0.91821 1.22230 0.95884 1.01400 1.02399 1.44661 1.78188 1.02561 1.12380 1.17749 0.92410 0.83946 0.93531 1.20245 1.21289 0.93599 0.97329 1.20655 0.96758 0.94313 0.96521 1.21005 1.17604 0.97969 0.94320 1.17730 0.87169 0.92263 0.92412 1.19802 1.33093 0.99014 1.01545 0.91163 1.26710 0.92142 0.94423 1.04516 1.69924 1.22785 1.15653 1.36439 0.85240 0.78583 0.79689 0.76425 1.18821 1.19183 1.18360 1.20655 1.16305 0.95107 0.96557 0.93243 0.94660 0.91229 0.91305 0.88590 0.94244 0.89956 0.92705 0.77736 0.86907 0.86516 0.89369 0.90510 0.88361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.65 9.80 71.98 0.71 -2.95 16 2 C -0.12 -2.67 5.47 30.60 0.17 -2.50 16 3 C 0.15 4.27 2.27 44.99 0.10 4.38 16 4 H 0.06 1.98 6.47 -2.39 -0.02 1.96 16 5 C -0.16 -4.17 9.42 71.98 0.68 -3.49 16 6 N -0.75 -28.06 4.70 -319.12 -1.50 -29.56 16 7 C 0.23 10.63 6.63 38.16 0.25 10.88 16 8 C -0.30 -13.60 8.86 22.59 0.20 -13.40 16 9 C -0.06 -2.97 10.02 22.20 0.22 -2.75 16 10 C -0.29 -15.22 9.79 22.76 0.22 -15.00 16 11 C 0.11 6.16 5.57 -21.31 -0.12 6.04 16 12 C -0.50 -28.82 9.05 23.46 0.21 -28.60 16 13 H 0.07 3.90 7.91 -2.91 -0.02 3.88 16 14 C 0.04 1.93 5.14 85.25 0.44 2.37 16 15 N -0.82 -44.55 10.95 21.82 0.24 -44.31 16 16 Si 0.98 39.86 29.59 68.60 2.03 41.89 16 17 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 18 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 19 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 20 C -0.26 -14.34 8.53 22.86 0.19 -14.15 16 21 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 22 H 0.03 1.04 7.75 -2.39 -0.02 1.02 16 23 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 24 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.10 1.65 8.14 -2.38 -0.02 1.63 16 26 H 0.04 1.20 7.70 -2.39 -0.02 1.18 16 27 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 28 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.39 14.31 8.61 -92.71 -0.80 13.51 16 30 H 0.11 4.43 6.08 -2.91 -0.02 4.42 16 31 H 0.12 4.57 8.06 -2.91 -0.02 4.55 16 32 H 0.09 4.46 8.06 -2.91 -0.02 4.44 16 33 H 0.28 13.91 8.30 -92.71 -0.77 13.14 16 34 H 0.10 5.62 6.16 -2.91 -0.02 5.60 16 Total: -1.00 -62.00 281.05 4.33 -57.67 By element: Atomic # 1 Polarization: 33.20 SS G_CDS: 0.28 Total: 33.48 kcal Atomic # 6 Polarization: -62.44 SS G_CDS: 3.28 Total: -59.17 kcal Atomic # 7 Polarization: -72.61 SS G_CDS: -1.26 Total: -73.88 kcal Atomic # 14 Polarization: 39.86 SS G_CDS: 2.03 Total: 41.89 kcal Total: -62.00 4.33 -57.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306335254.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.026 kcal (2) G-P(sol) polarization free energy of solvation -62.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds