Wall clock time and date at job start Mon Mar 30 2020 02:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 110.31146 * 2 1 4 4 C 1.53614 * 110.26977 * 122.04878 * 2 1 3 5 5 O 1.42908 * 108.92898 * 242.06743 * 4 2 1 6 6 C 1.50701 * 108.93082 * 0.72297 * 4 2 1 7 7 H 1.08009 * 119.99262 * 94.14223 * 6 4 2 8 8 C 1.37873 * 120.00652 * 274.13593 * 6 4 2 9 9 N 1.31518 * 119.99567 * 0.02562 * 8 6 4 10 10 Si 1.86804 * 120.00256 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.46666 * 90.00396 * 10 8 6 12 12 H 1.48501 * 109.46847 * 210.00169 * 10 8 6 13 13 H 1.48493 * 109.47106 * 330.00432 * 10 8 6 14 14 C 1.52966 * 112.27166 * 121.33019 * 4 2 1 15 15 C 1.55096 * 108.66444 * 330.07089 * 14 4 2 16 16 S 1.83240 * 110.26679 * 237.96452 * 2 1 3 17 17 O 1.42103 * 109.61621 * 14.36098 * 16 2 1 18 18 O 1.42097 * 109.61286 * 148.31470 * 16 2 1 19 19 H 1.09000 * 109.46854 * 297.95798 * 1 2 3 20 20 H 1.09004 * 109.46931 * 57.95220 * 1 2 3 21 21 H 1.08993 * 109.47471 * 177.95590 * 1 2 3 22 22 H 0.96695 * 113.99803 * 179.97438 * 5 4 2 23 23 H 0.97002 * 119.99722 * 179.97438 * 9 8 6 24 24 H 1.09003 * 109.65353 * 89.90739 * 14 4 2 25 25 H 1.09004 * 109.65496 * 210.22876 * 14 4 2 26 26 H 1.09001 * 111.07567 * 283.88865 * 15 14 4 27 27 H 1.09007 * 111.07630 * 159.85607 * 15 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9084 1.0222 0.0000 4 6 2.0622 -0.7647 1.2214 5 8 2.8168 0.1333 2.0378 6 6 0.8945 -1.2853 2.0191 7 1 0.5298 -2.2880 1.8510 8 6 0.2917 -0.4819 2.9637 9 7 0.7355 0.7391 3.1681 10 14 -1.1563 -1.1272 3.9519 11 1 -0.6589 -1.7825 5.1881 12 1 -2.0499 0.0018 4.3153 13 1 -1.9109 -2.1136 3.1380 14 6 2.9535 -1.9428 0.8246 15 6 2.4824 -2.4800 -0.5520 16 16 2.1647 -0.9118 -1.4572 17 8 1.1135 -1.1060 -2.3935 18 8 3.3984 -0.3439 -1.8750 19 1 -0.3633 0.4818 0.9077 20 1 -0.3633 0.5453 -0.8711 21 1 -0.3634 -1.0269 -0.0367 22 1 3.1877 -0.2747 2.8321 23 1 0.3112 1.3045 3.8323 24 1 3.9894 -1.6112 0.7537 25 1 2.8734 -2.7314 1.5728 26 1 1.5694 -3.0669 -0.4521 27 1 3.2682 -3.0600 -1.0362 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307009922.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:43 Heat of formation + Delta-G solvation = -135.538753 kcal Electronic energy + Delta-G solvation = -14291.042358 eV Core-core repulsion = 11754.733858 eV Total energy + Delta-G solvation = -2536.308499 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 220.060 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.23172 -38.01797 -36.95565 -34.39398 -34.11281 -32.40851 -27.97739 -26.10298 -24.20364 -21.39369 -19.69557 -19.06705 -17.76324 -17.03107 -16.63690 -16.43588 -16.01783 -15.38399 -14.76974 -14.62100 -13.89242 -13.67389 -13.18652 -13.13564 -13.02364 -12.99349 -12.70843 -12.53110 -12.32192 -12.18136 -11.73306 -11.53221 -11.13476 -10.63863 -10.54174 -10.03733 -7.91747 -6.18513 -0.71358 1.43369 1.50166 1.54936 1.68259 2.45327 2.75635 3.14842 3.27790 3.73912 3.80196 4.11017 4.28631 4.39077 4.63617 4.77509 4.88418 5.05658 5.10544 5.26372 5.61407 5.72270 5.85055 6.14256 6.77918 7.44469 7.65867 9.01267 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.044308 B = 0.012285 C = 0.011620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.785228 B = 2278.642656 C = 2409.085669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.508 4.508 3 H 0.110 0.890 4 C 0.244 3.756 5 O -0.550 6.550 6 C -0.561 4.561 7 H 0.070 0.930 8 C 0.044 3.956 9 N -0.869 5.869 10 Si 0.928 3.072 11 H -0.279 1.279 12 H -0.295 1.295 13 H -0.265 1.265 14 C -0.143 4.143 15 C -0.543 4.543 16 S 2.373 3.627 17 O -0.973 6.973 18 O -0.980 6.980 19 H 0.065 0.935 20 H 0.046 0.954 21 H 0.070 0.930 22 H 0.362 0.638 23 H 0.253 0.747 24 H 0.081 0.919 25 H 0.105 0.895 26 H 0.152 0.848 27 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.807 -6.180 -3.149 7.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.620 4.620 3 H 0.129 0.871 4 C 0.202 3.798 5 O -0.354 6.354 6 C -0.600 4.600 7 H 0.088 0.912 8 C -0.160 4.160 9 N -0.504 5.504 10 Si 0.755 3.245 11 H -0.205 1.205 12 H -0.221 1.221 13 H -0.190 1.190 14 C -0.182 4.182 15 C -0.676 4.676 16 S 2.562 3.438 17 O -0.970 6.970 18 O -0.977 6.977 19 H 0.084 0.916 20 H 0.065 0.935 21 H 0.088 0.912 22 H 0.207 0.793 23 H 0.062 0.938 24 H 0.099 0.901 25 H 0.123 0.877 26 H 0.170 0.830 27 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 1.749 -5.279 -4.537 7.177 hybrid contribution -0.786 -0.404 2.009 2.195 sum 0.963 -5.683 -2.528 6.294 Atomic orbital electron populations 1.21254 0.90113 1.02756 1.01205 1.29949 1.06339 1.10963 1.14729 0.87140 1.18938 0.89257 0.84143 0.87462 1.86489 1.71063 1.40188 1.37647 1.21777 1.16447 1.00413 1.21330 0.91169 1.25529 0.98160 0.94694 0.97657 1.70361 1.40037 1.07692 1.32319 0.86042 0.80799 0.77983 0.79699 1.20452 1.22134 1.18955 1.22882 0.99925 0.99769 0.95631 1.30233 1.12565 1.16568 1.08226 1.09427 0.74527 0.81618 0.78222 1.93487 1.57059 1.85719 1.60705 1.93508 1.44675 1.77624 1.81930 0.91626 0.93488 0.91156 0.79251 0.93781 0.90054 0.87698 0.83024 0.82334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.94 7.50 71.98 0.54 -3.40 15 2 C -0.51 -21.00 3.66 30.80 0.11 -20.88 15 3 H 0.11 4.90 7.93 -2.39 -0.02 4.88 15 4 C 0.24 10.23 1.00 -11.34 -0.01 10.22 15 5 O -0.55 -25.56 10.52 -148.98 -1.57 -27.13 15 6 C -0.56 -25.43 5.73 25.60 0.15 -25.28 15 7 H 0.07 3.03 7.81 -2.91 -0.02 3.01 15 8 C 0.04 2.11 3.88 84.65 0.33 2.44 15 9 N -0.87 -45.37 11.26 21.45 0.24 -45.13 15 10 Si 0.93 38.99 29.54 68.60 2.03 41.02 15 11 H -0.28 -11.57 7.11 99.48 0.71 -10.86 15 12 H -0.29 -12.78 7.11 99.48 0.71 -12.07 15 13 H -0.27 -10.77 7.11 99.48 0.71 -10.06 15 14 C -0.14 -4.65 5.45 31.30 0.17 -4.48 15 15 C -0.54 -14.86 7.46 72.70 0.54 -14.32 15 16 S 2.37 83.87 5.86 -56.49 -0.33 83.54 15 17 O -0.97 -37.93 17.38 -127.52 -2.22 -40.15 15 18 O -0.98 -39.82 18.16 -127.52 -2.32 -42.14 15 19 H 0.06 3.06 5.97 -2.39 -0.01 3.05 15 20 H 0.05 1.76 8.14 -2.39 -0.02 1.74 15 21 H 0.07 2.73 7.45 -2.39 -0.02 2.71 15 22 H 0.36 15.37 9.00 -74.06 -0.67 14.70 15 23 H 0.25 12.96 8.31 -92.71 -0.77 12.19 15 24 H 0.08 2.48 8.06 -2.39 -0.02 2.46 15 25 H 0.10 3.17 7.80 -2.38 -0.02 3.16 15 26 H 0.15 3.72 8.14 -2.39 -0.02 3.70 15 27 H 0.16 3.21 8.14 -2.38 -0.02 3.19 15 Total: -1.00 -62.08 235.44 -1.82 -63.90 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: 0.51 Total: 21.79 kcal Atomic # 6 Polarization: -57.53 SS G_CDS: 1.83 Total: -55.70 kcal Atomic # 7 Polarization: -45.37 SS G_CDS: 0.24 Total: -45.13 kcal Atomic # 8 Polarization: -103.32 SS G_CDS: -6.10 Total: -109.42 kcal Atomic # 14 Polarization: 38.99 SS G_CDS: 2.03 Total: 41.02 kcal Atomic # 16 Polarization: 83.87 SS G_CDS: -0.33 Total: 83.54 kcal Total: -62.08 -1.82 -63.90 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307009922.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.638 kcal (2) G-P(sol) polarization free energy of solvation -62.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds