Wall clock time and date at job start Mon Mar 30 2020 02:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30892 * 1 3 3 Si 1.86803 * 119.99865 * 2 1 4 4 H 1.48500 * 109.47103 * 240.00368 * 3 2 1 5 5 H 1.48506 * 109.47205 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47175 * 120.00190 * 3 2 1 7 7 C 1.39984 * 120.00592 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00719 * 161.19653 * 7 2 1 9 9 C 1.40370 * 119.99334 * 341.19771 * 7 2 1 10 10 C 1.46469 * 120.72509 * 329.13349 * 9 7 2 11 11 N 1.34446 * 133.73649 * 0.28952 * 10 9 7 12 12 C 1.30405 * 109.74412 * 179.71401 * 11 10 9 13 13 N 1.35871 * 109.89881 * 0.02562 * 12 11 10 14 14 H 0.97000 * 126.43342 * 179.97438 * 13 12 11 15 15 C 1.38193 * 107.12743 * 359.97438 * 13 12 11 16 16 C 1.39238 * 133.90161 * 179.97438 * 15 13 12 17 17 C 1.37789 * 121.12521 * 180.02562 * 16 15 13 18 18 C 1.38875 * 121.29736 * 359.97438 * 17 16 15 19 19 S 1.76196 * 120.05319 * 179.97438 * 18 17 16 20 20 H 0.97002 * 120.00487 * 5.05918 * 1 2 3 21 21 H 1.08000 * 125.05133 * 179.97438 * 12 11 10 22 22 H 1.08004 * 119.43704 * 0.02562 * 16 15 13 23 23 H 1.08000 * 119.34678 * 179.97438 * 17 16 15 24 24 H 1.41002 * 100.00140 * 89.99840 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 3.0966 1.6965 -1.2125 5 1 1.2778 2.7465 0.0006 6 1 3.0967 1.6965 1.2124 7 6 2.0090 -1.2122 -0.0005 8 1 3.0457 -1.2371 -0.3020 9 6 1.3633 -2.3956 0.3908 10 6 0.2883 -2.3679 1.3853 11 7 -0.3010 -1.3861 2.0898 12 6 -1.2301 -1.8892 2.8542 13 7 -1.2909 -3.2357 2.6832 14 1 -1.8951 -3.8468 3.1330 15 6 -0.3302 -3.5709 1.7481 16 6 0.0794 -4.7706 1.1721 17 6 1.0933 -4.8034 0.2397 18 6 1.7434 -3.6432 -0.1603 19 16 3.0363 -3.7232 -1.3547 20 1 -0.4851 0.8367 -0.0741 21 1 -1.8575 -1.3201 3.5243 22 1 -0.4060 -5.6911 1.4611 23 1 1.3883 -5.7500 -0.1884 24 1 2.2865 -3.5645 -2.5382 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307270910.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:28 Heat of formation + Delta-G solvation = 51.208488 kcal Electronic energy + Delta-G solvation = -12475.621919 eV Core-core repulsion = 10287.013058 eV Total energy + Delta-G solvation = -2188.608860 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 220.037 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.27678 -37.45909 -35.58815 -33.19245 -31.17995 -29.68302 -26.96485 -23.48104 -22.70307 -21.87522 -19.68347 -18.30244 -17.64218 -17.30947 -16.46443 -15.87579 -15.50253 -14.93851 -14.61540 -14.11112 -13.56625 -13.37554 -12.80900 -12.77038 -12.42498 -11.88028 -11.85552 -11.32819 -11.05366 -10.87617 -10.24357 -9.00166 -8.79886 -8.62172 -8.51267 -6.35999 0.72087 0.78653 1.40005 1.48041 1.52597 1.59544 2.15840 2.21354 2.48905 2.53155 2.81008 3.67485 4.02452 4.34571 4.73048 4.88645 4.96567 5.09762 5.16660 5.38524 5.79782 5.95275 6.07427 6.25728 6.51276 6.72998 6.79236 7.06317 7.68160 8.22482 Molecular weight = 220.04amu Principal moments of inertia in cm(-1) A = 0.021903 B = 0.016607 C = 0.009808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.036778 B = 1685.617033 C = 2854.260272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.743 5.743 2 C 0.040 3.960 3 Si 0.984 3.016 4 H -0.255 1.255 5 H -0.266 1.266 6 H -0.263 1.263 7 C -0.440 4.440 8 H 0.100 0.900 9 C 0.161 3.839 10 C -0.024 4.024 11 N -0.473 5.473 12 C 0.173 3.827 13 N -0.588 5.588 14 H 0.429 0.571 15 C 0.064 3.936 16 C -0.267 4.267 17 C -0.005 4.005 18 C -0.306 4.306 19 S -0.146 6.146 20 H 0.291 0.709 21 H 0.239 0.761 22 H 0.120 0.880 23 H 0.127 0.873 24 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.568 -1.578 3.361 4.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.362 5.362 2 C -0.185 4.185 3 Si 0.804 3.196 4 H -0.179 1.179 5 H -0.190 1.190 6 H -0.187 1.187 7 C -0.466 4.466 8 H 0.118 0.882 9 C 0.153 3.847 10 C -0.148 4.148 11 N -0.190 5.190 12 C -0.111 4.111 13 N -0.201 5.201 14 H 0.269 0.731 15 C -0.049 4.049 16 C -0.291 4.291 17 C -0.028 4.028 18 C -0.422 4.422 19 S 0.011 5.989 20 H 0.102 0.898 21 H 0.255 0.745 22 H 0.138 0.862 23 H 0.145 0.855 24 H 0.014 0.986 Dipole moment (debyes) X Y Z Total from point charges -1.714 -0.599 2.854 3.383 hybrid contribution -1.759 -0.287 0.149 1.789 sum -3.474 -0.885 3.004 4.677 Atomic orbital electron populations 1.69791 1.09307 1.31360 1.25759 1.26853 0.95366 1.04539 0.91738 0.85216 0.78872 0.75376 0.80110 1.17933 1.19034 1.18748 1.20034 0.99569 0.91805 1.35199 0.88237 1.18334 0.86889 0.92669 0.86761 1.20012 1.03625 0.88387 1.02783 1.69738 1.08632 1.32757 1.07903 1.25767 1.00992 0.81200 1.03168 1.42912 1.31679 1.09443 1.36022 0.73137 1.19120 0.93753 0.97083 0.94951 1.19228 1.06951 0.94071 1.08809 1.20766 0.92096 0.96291 0.93597 1.20576 1.12996 0.95712 1.12892 1.85532 1.14212 1.96482 1.02718 0.89791 0.74482 0.86162 0.85508 0.98563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -38.83 10.67 21.84 0.23 -38.60 14 2 C 0.04 2.02 5.00 85.26 0.43 2.45 14 3 Si 0.98 38.75 29.60 68.60 2.03 40.78 14 4 H -0.26 -9.59 7.11 99.48 0.71 -8.88 14 5 H -0.27 -9.84 7.11 99.48 0.71 -9.13 14 6 H -0.26 -10.40 7.11 99.48 0.71 -9.69 14 7 C -0.44 -23.87 8.34 23.21 0.19 -23.67 14 8 H 0.10 5.26 7.20 -2.91 -0.02 5.24 14 9 C 0.16 8.90 5.63 -19.79 -0.11 8.79 14 10 C -0.02 -1.28 6.28 41.33 0.26 -1.02 14 11 N -0.47 -23.46 8.93 -187.58 -1.68 -25.13 14 12 C 0.17 6.51 12.98 180.02 2.34 8.85 14 13 N -0.59 -20.97 6.24 -191.00 -1.19 -22.16 14 14 H 0.43 10.94 8.96 -92.71 -0.83 10.10 14 15 C 0.06 2.94 7.30 38.82 0.28 3.22 14 16 C -0.27 -11.51 10.01 22.40 0.22 -11.29 14 17 C -0.01 -0.24 9.70 22.32 0.22 -0.02 14 18 C -0.31 -15.47 6.19 23.25 0.14 -15.33 14 19 S -0.15 -6.54 24.41 -56.49 -1.38 -7.92 14 20 H 0.29 13.87 8.31 -92.71 -0.77 13.10 14 21 H 0.24 6.16 8.06 -2.91 -0.02 6.14 14 22 H 0.12 4.31 8.06 -2.91 -0.02 4.29 14 23 H 0.13 4.90 8.06 -2.91 -0.02 4.88 14 24 H 0.05 2.18 9.55 73.80 0.70 2.88 14 Total: -1.00 -65.25 230.81 3.12 -62.12 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: 1.13 Total: 18.93 kcal Atomic # 6 Polarization: -31.99 SS G_CDS: 3.97 Total: -28.02 kcal Atomic # 7 Polarization: -83.26 SS G_CDS: -2.63 Total: -85.89 kcal Atomic # 14 Polarization: 38.75 SS G_CDS: 2.03 Total: 40.78 kcal Atomic # 16 Polarization: -6.54 SS G_CDS: -1.38 Total: -7.92 kcal Total: -65.25 3.12 -62.12 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307270910.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.330 kcal (2) G-P(sol) polarization free energy of solvation -65.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds