Wall clock time and date at job start Mon Mar 30 2020 02:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31709 * 1 3 3 Si 1.86799 * 120.00114 * 2 1 4 4 H 1.48504 * 109.47266 * 270.00225 * 3 2 1 5 5 H 1.48498 * 109.47041 * 30.00384 * 3 2 1 6 6 H 1.48501 * 109.46928 * 150.00628 * 3 2 1 7 7 C 1.38636 * 119.99817 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99440 * 359.97438 * 7 2 1 9 9 N 1.36774 * 119.99729 * 179.97438 * 7 2 1 10 10 C 1.39570 * 120.00074 * 179.97438 * 9 7 2 11 11 C 1.32739 * 122.72059 * 359.95833 * 10 9 7 12 12 S 1.75252 * 111.38219 * 179.97438 * 11 10 9 13 13 C 1.75988 * 92.36311 * 0.05125 * 12 11 10 14 14 N 1.33464 * 130.15645 * 179.97438 * 13 12 11 15 15 C 1.31289 * 122.15804 * 179.97438 * 14 13 12 16 16 C 1.38644 * 121.05667 * 359.97438 * 15 14 13 17 17 C 1.37755 * 119.44820 * 0.02562 * 16 15 14 18 18 C 1.39781 * 109.67803 * 359.94908 * 13 12 11 19 19 H 0.97003 * 119.99719 * 359.97438 * 1 2 3 20 20 H 0.96998 * 120.00385 * 359.97438 * 9 7 2 21 21 H 1.08003 * 124.30768 * 0.03724 * 11 10 9 22 22 H 1.08002 * 119.47167 * 179.97438 * 15 14 13 23 23 H 1.07999 * 120.27859 * 179.97438 * 16 15 14 24 24 H 1.08000 * 120.63906 * 179.72615 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3171 0.0000 0.0000 3 14 2.2511 1.6177 0.0000 4 1 2.4986 2.0465 -1.4001 5 1 1.4486 2.6526 0.7001 6 1 3.5487 1.4400 0.6999 7 6 2.0102 -1.2006 -0.0005 8 1 1.4701 -2.1358 -0.0005 9 7 3.3780 -1.2006 -0.0011 10 6 4.0759 -2.4093 -0.0011 11 6 3.4675 -3.5891 0.0002 12 16 4.6251 -4.9049 -0.0009 13 6 5.9932 -3.7979 -0.0017 14 7 7.3039 -4.0495 -0.0022 15 6 8.1997 -3.0897 -0.0033 16 6 7.8195 -1.7565 -0.0044 17 6 6.4801 -1.4342 -0.0038 18 6 5.5313 -2.4787 -0.0022 19 1 -0.4850 0.8401 0.0004 20 1 3.8630 -0.3606 -0.0014 21 1 2.3956 -3.7213 0.0008 22 1 9.2497 -3.3428 -0.0033 23 1 8.5670 -0.9770 -0.0048 24 1 6.1624 -0.4020 -0.0002 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307400001.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:02 Heat of formation + Delta-G solvation = 40.090581 kcal Electronic energy + Delta-G solvation = -12010.980277 eV Core-core repulsion = 9821.889308 eV Total energy + Delta-G solvation = -2189.090969 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 220.037 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.17289 -38.49117 -35.12976 -33.16606 -33.14054 -29.95970 -26.88489 -24.45938 -24.42374 -21.04713 -20.61725 -18.93171 -17.67593 -17.03889 -16.81996 -15.87585 -15.55830 -15.51923 -15.06411 -14.21154 -14.02216 -13.82989 -13.38930 -13.00135 -12.85901 -12.35319 -12.03529 -11.88936 -11.59488 -11.16040 -10.46105 -10.41422 -9.46963 -8.44414 -8.30575 -5.80968 -0.24800 0.15022 0.60013 1.23286 1.27008 1.32265 1.39778 1.67307 2.17904 2.75885 3.03922 3.10067 3.56259 3.77868 3.88164 4.12256 4.34947 4.60099 4.91072 5.08888 5.21673 5.35088 5.57168 5.68164 5.90412 6.60913 6.82850 7.27601 7.41894 8.71473 Molecular weight = 220.04amu Principal moments of inertia in cm(-1) A = 0.036601 B = 0.009618 C = 0.007637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.817522 B = 2910.414004 C = 3665.389845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.022 4.022 3 Si 0.953 3.047 4 H -0.261 1.261 5 H -0.275 1.275 6 H -0.243 1.243 7 C -0.298 4.298 8 H 0.077 0.923 9 N -0.598 5.598 10 C 0.191 3.809 11 C -0.383 4.383 12 S 0.125 5.875 13 C 0.056 3.944 14 N -0.487 5.487 15 C 0.129 3.871 16 C -0.166 4.166 17 C -0.049 4.049 18 C -0.153 4.153 19 H 0.277 0.723 20 H 0.384 0.616 21 H 0.139 0.861 22 H 0.206 0.794 23 H 0.186 0.814 24 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.548 -0.226 0.010 16.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.220 4.220 3 Si 0.775 3.225 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.167 1.167 7 C -0.427 4.427 8 H 0.095 0.905 9 N -0.213 5.213 10 C 0.072 3.928 11 C -0.529 4.529 12 S 0.380 5.620 13 C -0.187 4.187 14 N -0.199 5.199 15 C -0.039 4.039 16 C -0.189 4.189 17 C -0.077 4.077 18 C -0.167 4.167 19 H 0.086 0.914 20 H 0.220 0.780 21 H 0.157 0.843 22 H 0.223 0.777 23 H 0.203 0.797 24 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 16.074 -2.474 0.012 16.263 hybrid contribution -0.790 3.185 0.004 3.281 sum 15.284 0.711 0.016 15.301 Atomic orbital electron populations 1.69885 1.07382 1.28854 1.51330 1.25815 0.96418 1.02144 0.97632 0.85487 0.79259 0.78173 0.79558 1.18610 1.19982 1.16735 1.19092 0.80642 0.95502 1.47494 0.90463 1.40465 1.04442 1.03290 1.73064 1.17401 0.88659 0.87419 0.99284 1.23573 1.01746 0.94277 1.33302 1.83132 0.91112 1.06631 1.81142 1.23549 0.96506 0.94952 1.03724 1.67298 0.99102 1.38627 1.14824 1.23575 0.99989 0.88387 0.91957 1.22325 0.95554 0.99193 1.01864 1.21682 0.93097 0.98460 0.94441 1.19912 0.92197 0.95820 1.08771 0.91379 0.78033 0.84325 0.77719 0.79693 0.83648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.83 13.97 21.62 0.30 -54.53 14 2 C -0.02 -1.18 5.50 84.81 0.47 -0.72 14 3 Si 0.95 39.55 27.73 68.60 1.90 41.45 14 4 H -0.26 -10.42 7.11 99.48 0.71 -9.72 14 5 H -0.27 -11.31 7.11 99.48 0.71 -10.60 14 6 H -0.24 -8.89 6.52 99.48 0.65 -8.24 14 7 C -0.30 -16.46 10.08 84.02 0.85 -15.61 14 8 H 0.08 4.74 6.27 -2.91 -0.02 4.72 14 9 N -0.60 -28.33 5.27 -183.36 -0.97 -29.30 14 10 C 0.19 8.58 6.77 38.66 0.26 8.84 14 11 C -0.38 -17.41 10.20 66.65 0.68 -16.73 14 12 S 0.12 4.71 23.22 -56.49 -1.31 3.40 14 13 C 0.06 2.09 7.64 84.82 0.65 2.73 14 14 N -0.49 -15.49 10.38 -191.22 -1.98 -17.48 14 15 C 0.13 2.88 11.18 84.87 0.95 3.83 14 16 C -0.17 -3.41 10.08 22.25 0.22 -3.19 14 17 C -0.05 -1.41 10.03 22.86 0.23 -1.18 14 18 C -0.15 -5.80 6.06 -20.27 -0.12 -5.92 14 19 H 0.28 15.06 8.32 -92.71 -0.77 14.29 14 20 H 0.38 16.19 5.33 -92.71 -0.49 15.70 14 21 H 0.14 6.83 6.47 -2.91 -0.02 6.81 14 22 H 0.21 2.53 8.06 -2.91 -0.02 2.51 14 23 H 0.19 2.00 8.06 -2.91 -0.02 1.98 14 24 H 0.15 3.60 7.71 -2.91 -0.02 3.58 14 Total: -1.00 -66.18 229.04 2.81 -63.37 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: 0.69 Total: 21.02 kcal Atomic # 6 Polarization: -32.12 SS G_CDS: 4.18 Total: -27.94 kcal Atomic # 7 Polarization: -98.65 SS G_CDS: -2.65 Total: -101.30 kcal Atomic # 14 Polarization: 39.55 SS G_CDS: 1.90 Total: 41.45 kcal Atomic # 16 Polarization: 4.71 SS G_CDS: -1.31 Total: 3.40 kcal Total: -66.18 2.81 -63.37 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307400001.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.458 kcal (2) G-P(sol) polarization free energy of solvation -66.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds