Wall clock time and date at job start Mon Mar 30 2020 02:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47236 * 2 1 4 4 H 1.09002 * 109.47153 * 304.99767 * 3 2 1 5 5 C 1.53002 * 109.46817 * 184.99998 * 3 2 1 6 6 N 1.46494 * 109.47345 * 65.00126 * 5 3 2 7 7 C 1.36940 * 119.99930 * 180.02562 * 6 5 3 8 8 H 1.07991 * 120.00059 * 359.97438 * 7 6 5 9 9 C 1.38818 * 119.99648 * 179.97438 * 7 6 5 10 10 N 1.31619 * 120.00186 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99743 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47071 * 90.00196 * 11 9 7 13 13 H 1.48493 * 109.47086 * 209.99963 * 11 9 7 14 14 H 1.48499 * 109.47003 * 330.00223 * 11 9 7 15 15 C 1.50701 * 109.47212 * 64.99766 * 3 2 1 16 16 C 1.38236 * 119.99963 * 59.72884 * 15 3 2 17 17 C 1.38236 * 120.00036 * 179.81111 * 16 15 3 18 18 C 1.38226 * 119.99834 * 0.39071 * 17 16 15 19 19 C 1.38237 * 120.00085 * 359.86461 * 18 17 16 20 20 C 1.38229 * 120.00216 * 240.00128 * 15 3 2 21 21 H 1.09001 * 109.46917 * 300.00567 * 1 2 3 22 22 H 1.09004 * 109.46741 * 59.99889 * 1 2 3 23 23 H 1.09000 * 109.47403 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46917 * 239.99433 * 2 1 3 25 25 H 1.09004 * 109.46741 * 120.00111 * 2 1 3 26 26 H 1.09008 * 109.46873 * 184.99985 * 5 3 2 27 27 H 1.08997 * 109.47047 * 304.99674 * 5 3 2 28 28 H 0.97008 * 119.99803 * 359.97438 * 6 5 3 29 29 H 0.96996 * 119.99974 * 180.02562 * 10 9 7 30 30 H 1.08010 * 119.99941 * 359.97438 * 16 15 3 31 31 H 1.08001 * 119.99466 * 180.23187 * 17 16 15 32 32 H 1.08005 * 120.00406 * 179.83264 * 18 17 16 33 33 H 1.07998 * 120.00065 * 179.97438 * 19 18 17 34 34 H 1.08002 * 120.00084 * 359.97438 * 20 15 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5649 1.4442 -0.1257 6 7 3.9480 0.8977 -1.4298 7 6 5.2711 0.7996 -1.7691 8 1 6.0320 1.1255 -1.0756 9 6 5.6341 0.2812 -3.0047 10 7 4.7067 -0.1164 -3.8497 11 14 7.4388 0.1481 -3.4679 12 1 7.9642 -1.1725 -3.0376 13 1 7.5833 0.2826 -4.9397 14 1 8.2036 1.2284 -2.7947 15 6 1.6414 2.1163 1.2877 16 6 2.0721 1.6049 2.4976 17 6 1.7096 2.2252 3.6785 18 6 0.9098 3.3522 3.6500 19 6 0.4746 3.8605 2.4404 20 6 0.8403 3.2424 1.2593 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5139 0.8900 26 1 3.9356 2.4654 -0.0366 27 1 3.9954 0.8310 0.6659 28 1 3.2645 0.6046 -2.0526 29 1 4.9603 -0.4790 -4.7129 30 1 2.6941 0.7221 2.5200 31 1 2.0493 1.8277 4.6236 32 1 0.6243 3.8353 4.5728 33 1 -0.1506 4.7408 2.4181 34 1 0.5004 3.6397 0.3142 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308750057.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:10 Heat of formation + Delta-G solvation = 16.900289 kcal Electronic energy + Delta-G solvation = -14415.141344 eV Core-core repulsion = 12119.383997 eV Total energy + Delta-G solvation = -2295.757347 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.39896 -36.15007 -33.54121 -30.85104 -30.75098 -30.38763 -27.26840 -23.94421 -22.69938 -22.27135 -21.72016 -19.40360 -17.27490 -16.50433 -15.27714 -14.72908 -14.59867 -14.11768 -13.75590 -13.42042 -13.19700 -13.04260 -12.53528 -12.34863 -12.32445 -11.49618 -11.22330 -11.01242 -10.83257 -10.80924 -10.38993 -10.28974 -10.18551 -9.99141 -9.63582 -8.83579 -8.75019 -8.44074 -6.87642 -5.73347 -3.01432 1.55716 1.56816 3.45888 3.50939 3.52755 3.97286 4.62187 4.96921 5.01906 5.12762 5.27422 5.35322 5.56001 5.59753 5.61542 5.69358 5.72613 5.92809 6.07014 6.12749 6.23259 6.25759 6.27148 6.43071 6.53018 6.61127 6.64229 6.75252 6.80818 6.89054 7.06287 7.19576 7.73638 8.45925 9.56996 10.15273 10.50455 11.49727 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.041223 B = 0.006272 C = 0.005850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.076681 B = 4463.117917 C = 4784.870002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.112 4.112 3 C -0.060 4.060 4 H 0.077 0.923 5 C 0.163 3.837 6 N -0.731 5.731 7 C -0.238 4.238 8 H 0.070 0.930 9 C -0.015 4.015 10 N -0.934 5.934 11 Si 0.907 3.093 12 H -0.290 1.290 13 H -0.292 1.292 14 H -0.282 1.282 15 C -0.054 4.054 16 C -0.114 4.114 17 C -0.121 4.121 18 C -0.135 4.135 19 C -0.122 4.122 20 C -0.119 4.119 21 H 0.049 0.951 22 H 0.051 0.949 23 H 0.048 0.952 24 H 0.078 0.922 25 H 0.058 0.942 26 H 0.018 0.982 27 H 0.020 0.980 28 H 0.384 0.616 29 H 0.255 0.745 30 H 0.122 0.878 31 H 0.117 0.883 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.459 4.414 12.552 16.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.150 4.150 3 C -0.079 4.079 4 H 0.096 0.904 5 C 0.035 3.965 6 N -0.376 5.376 7 C -0.369 4.369 8 H 0.088 0.912 9 C -0.210 4.210 10 N -0.583 5.583 11 Si 0.738 3.262 12 H -0.217 1.217 13 H -0.218 1.218 14 H -0.208 1.208 15 C -0.054 4.054 16 C -0.132 4.132 17 C -0.139 4.139 18 C -0.153 4.153 19 C -0.140 4.140 20 C -0.137 4.137 21 H 0.068 0.932 22 H 0.070 0.930 23 H 0.067 0.933 24 H 0.097 0.903 25 H 0.077 0.923 26 H 0.036 0.964 27 H 0.038 0.962 28 H 0.218 0.782 29 H 0.064 0.936 30 H 0.140 0.860 31 H 0.135 0.865 32 H 0.133 0.867 33 H 0.134 0.866 34 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -9.274 4.430 12.549 16.221 hybrid contribution 0.796 -0.134 -0.489 0.944 sum -8.478 4.296 12.061 15.355 Atomic orbital electron populations 1.21788 0.96598 1.00938 1.01326 1.21546 0.94847 0.95604 1.02978 1.20472 0.97673 0.95930 0.93794 0.90444 1.20660 0.90001 0.96365 0.89448 1.42382 1.05311 1.75561 1.14332 1.19242 0.84008 1.34440 0.99188 0.91244 1.24726 0.97450 1.01977 0.96872 1.69658 1.31232 1.48562 1.08887 0.86190 0.84896 0.77738 0.77398 1.21750 1.21791 1.20796 1.19947 0.95590 0.94751 0.95128 1.21078 0.99936 1.00228 0.91916 1.21100 0.98590 0.96237 0.97979 1.21041 0.99443 0.97201 0.97626 1.21074 1.00414 0.99839 0.92672 1.21106 0.98613 0.95890 0.98130 0.93224 0.92955 0.93264 0.90316 0.92315 0.96383 0.96199 0.78189 0.93554 0.85984 0.86504 0.86707 0.86563 0.86275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.73 37.16 0.36 -1.71 16 2 C -0.11 -1.83 5.22 -26.73 -0.14 -1.97 16 3 C -0.06 -1.02 2.07 -91.77 -0.19 -1.21 16 4 H 0.08 1.36 7.88 -51.93 -0.41 0.95 16 5 C 0.16 3.41 5.39 -4.04 -0.02 3.39 16 6 N -0.73 -18.85 5.28 -59.91 -0.32 -19.17 16 7 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 10 N -0.93 -28.53 13.06 55.49 0.72 -27.80 16 11 Si 0.91 22.70 29.55 -169.99 -5.02 17.68 16 12 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 13 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 14 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 15 C -0.05 -0.81 3.76 -104.63 -0.39 -1.20 16 16 C -0.11 -1.61 8.71 -39.58 -0.34 -1.95 16 17 C -0.12 -1.49 10.05 -39.59 -0.40 -1.89 16 18 C -0.14 -1.57 10.05 -39.59 -0.40 -1.97 16 19 C -0.12 -1.47 10.05 -39.58 -0.40 -1.87 16 20 C -0.12 -1.63 9.67 -39.59 -0.38 -2.02 16 21 H 0.05 0.66 7.38 -51.93 -0.38 0.28 16 22 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.08 1.48 7.07 -51.93 -0.37 1.11 16 25 H 0.06 0.93 7.21 -51.93 -0.37 0.55 16 26 H 0.02 0.40 8.14 -51.92 -0.42 -0.02 16 27 H 0.02 0.42 7.59 -51.93 -0.39 0.03 16 28 H 0.38 10.29 6.85 -40.82 -0.28 10.01 16 29 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 30 H 0.12 1.70 7.13 -52.48 -0.37 1.32 16 31 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 32 H 0.11 1.05 8.06 -52.48 -0.42 0.63 16 33 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 34 H 0.12 1.51 7.95 -52.49 -0.42 1.09 16 LS Contribution 283.19 15.07 4.27 4.27 Total: -1.00 -30.53 283.19 -7.98 -38.51 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -5.08 Total: 6.37 kcal Atomic # 6 Polarization: -17.30 SS G_CDS: -2.55 Total: -19.85 kcal Atomic # 7 Polarization: -47.38 SS G_CDS: 0.41 Total: -46.97 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -30.53 -7.98 -38.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308750057.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.407 kcal (2) G-P(sol) polarization free energy of solvation -30.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds