Wall clock time and date at job start Mon Mar 30 2020 02:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47236 * 2 1 4 4 H 1.09002 * 109.47153 * 304.99767 * 3 2 1 5 5 C 1.53002 * 109.46817 * 184.99998 * 3 2 1 6 6 N 1.46494 * 109.47345 * 65.00126 * 5 3 2 7 7 C 1.36940 * 119.99930 * 180.02562 * 6 5 3 8 8 H 1.07991 * 120.00059 * 359.97438 * 7 6 5 9 9 C 1.38818 * 119.99648 * 179.97438 * 7 6 5 10 10 N 1.31619 * 120.00186 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99743 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47071 * 90.00196 * 11 9 7 13 13 H 1.48493 * 109.47086 * 209.99963 * 11 9 7 14 14 H 1.48499 * 109.47003 * 330.00223 * 11 9 7 15 15 C 1.50701 * 109.47212 * 64.99766 * 3 2 1 16 16 C 1.38236 * 119.99963 * 59.72884 * 15 3 2 17 17 C 1.38236 * 120.00036 * 179.81111 * 16 15 3 18 18 C 1.38226 * 119.99834 * 0.39071 * 17 16 15 19 19 C 1.38237 * 120.00085 * 359.86461 * 18 17 16 20 20 C 1.38229 * 120.00216 * 240.00128 * 15 3 2 21 21 H 1.09001 * 109.46917 * 300.00567 * 1 2 3 22 22 H 1.09004 * 109.46741 * 59.99889 * 1 2 3 23 23 H 1.09000 * 109.47403 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46917 * 239.99433 * 2 1 3 25 25 H 1.09004 * 109.46741 * 120.00111 * 2 1 3 26 26 H 1.09008 * 109.46873 * 184.99985 * 5 3 2 27 27 H 1.08997 * 109.47047 * 304.99674 * 5 3 2 28 28 H 0.97008 * 119.99803 * 359.97438 * 6 5 3 29 29 H 0.96996 * 119.99974 * 180.02562 * 10 9 7 30 30 H 1.08010 * 119.99941 * 359.97438 * 16 15 3 31 31 H 1.08001 * 119.99466 * 180.23187 * 17 16 15 32 32 H 1.08005 * 120.00406 * 179.83264 * 18 17 16 33 33 H 1.07998 * 120.00065 * 179.97438 * 19 18 17 34 34 H 1.08002 * 120.00084 * 359.97438 * 20 15 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5649 1.4442 -0.1257 6 7 3.9480 0.8977 -1.4298 7 6 5.2711 0.7996 -1.7691 8 1 6.0320 1.1255 -1.0756 9 6 5.6341 0.2812 -3.0047 10 7 4.7067 -0.1164 -3.8497 11 14 7.4388 0.1481 -3.4679 12 1 7.9642 -1.1725 -3.0376 13 1 7.5833 0.2826 -4.9397 14 1 8.2036 1.2284 -2.7947 15 6 1.6414 2.1163 1.2877 16 6 2.0721 1.6049 2.4976 17 6 1.7096 2.2252 3.6785 18 6 0.9098 3.3522 3.6500 19 6 0.4746 3.8605 2.4404 20 6 0.8403 3.2424 1.2593 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5139 0.8900 26 1 3.9356 2.4654 -0.0366 27 1 3.9954 0.8310 0.6659 28 1 3.2645 0.6046 -2.0526 29 1 4.9603 -0.4790 -4.7129 30 1 2.6941 0.7221 2.5200 31 1 2.0493 1.8277 4.6236 32 1 0.6243 3.8353 4.5728 33 1 -0.1506 4.7408 2.4181 34 1 0.5004 3.6397 0.3142 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308750057.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:10 Heat of formation + Delta-G solvation = -0.035765 kcal Electronic energy + Delta-G solvation = -14415.875746 eV Core-core repulsion = 12119.383997 eV Total energy + Delta-G solvation = -2296.491749 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.50117 -37.61348 -35.38721 -32.77421 -31.74162 -31.55614 -28.85954 -25.79617 -23.82946 -23.76634 -22.96136 -20.72180 -19.26426 -17.66278 -16.74763 -16.25682 -15.87479 -15.62922 -15.15050 -15.01710 -14.75433 -14.13442 -14.12142 -13.69767 -13.36313 -12.97528 -12.92477 -12.70757 -12.33605 -12.17908 -11.96845 -11.91284 -11.71098 -11.48256 -11.38039 -10.93017 -9.74057 -9.50961 -9.01100 -7.96101 -5.25252 0.53886 0.57943 1.46481 1.48558 1.57157 2.55249 2.96363 3.37030 3.71466 3.84569 4.18948 4.22855 4.24139 4.25645 4.35431 4.42642 4.62618 4.68299 4.75149 4.79982 4.90138 5.05492 5.13337 5.19143 5.24653 5.26370 5.37843 5.45415 5.47808 5.67815 5.69314 5.86825 6.20356 6.26370 7.32435 8.07137 8.32549 9.27503 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.041223 B = 0.006272 C = 0.005850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.076681 B = 4463.117917 C = 4784.870002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.108 4.108 3 C -0.047 4.047 4 H 0.067 0.933 5 C 0.165 3.835 6 N -0.742 5.742 7 C -0.249 4.249 8 H 0.073 0.927 9 C -0.073 4.073 10 N -0.969 5.969 11 Si 0.975 3.025 12 H -0.285 1.285 13 H -0.293 1.293 14 H -0.271 1.271 15 C -0.072 4.072 16 C -0.129 4.129 17 C -0.123 4.123 18 C -0.131 4.131 19 C -0.122 4.122 20 C -0.131 4.131 21 H 0.058 0.942 22 H 0.051 0.949 23 H 0.060 0.940 24 H 0.046 0.954 25 H 0.061 0.939 26 H 0.010 0.990 27 H 0.020 0.980 28 H 0.375 0.625 29 H 0.252 0.748 30 H 0.116 0.884 31 H 0.140 0.860 32 H 0.146 0.854 33 H 0.143 0.857 34 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.838 5.298 14.359 18.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.146 4.146 3 C -0.065 4.065 4 H 0.086 0.914 5 C 0.038 3.962 6 N -0.385 5.385 7 C -0.381 4.381 8 H 0.091 0.909 9 C -0.265 4.265 10 N -0.619 5.619 11 Si 0.804 3.196 12 H -0.212 1.212 13 H -0.220 1.220 14 H -0.196 1.196 15 C -0.072 4.072 16 C -0.147 4.147 17 C -0.141 4.141 18 C -0.148 4.148 19 C -0.139 4.139 20 C -0.149 4.149 21 H 0.077 0.923 22 H 0.070 0.930 23 H 0.079 0.921 24 H 0.065 0.935 25 H 0.080 0.920 26 H 0.028 0.972 27 H 0.038 0.962 28 H 0.208 0.792 29 H 0.061 0.939 30 H 0.134 0.866 31 H 0.158 0.842 32 H 0.164 0.836 33 H 0.161 0.839 34 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -9.656 5.329 14.395 18.134 hybrid contribution 0.879 -0.359 -0.951 1.344 sum -8.777 4.970 13.444 16.807 Atomic orbital electron populations 1.21694 0.94377 1.01865 1.01744 1.21464 0.96762 0.94852 1.01473 1.20252 0.94577 0.96621 0.95091 0.91417 1.20750 0.93058 0.95174 0.87177 1.42563 1.04390 1.75721 1.15832 1.19633 0.85299 1.33784 0.99383 0.90949 1.25570 1.01816 1.02218 0.96941 1.69817 1.33265 1.49729 1.09135 0.85120 0.79810 0.77965 0.76742 1.21219 1.21951 1.19568 1.19750 0.97478 0.95869 0.94125 1.21144 1.00480 1.00559 0.92474 1.21399 0.98233 0.96297 0.98141 1.21454 0.98111 0.96535 0.98747 1.21408 1.00115 1.00321 0.92101 1.21252 0.98702 0.95633 0.99315 0.92288 0.92956 0.92083 0.93496 0.92008 0.97237 0.96178 0.79202 0.93895 0.86597 0.84195 0.83618 0.83921 0.85917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.79 9.73 71.98 0.70 -3.09 16 2 C -0.11 -3.59 5.22 30.59 0.16 -3.43 16 3 C -0.05 -1.62 2.07 -11.54 -0.02 -1.64 16 4 H 0.07 2.45 7.88 -2.39 -0.02 2.43 16 5 C 0.16 7.09 5.39 86.38 0.47 7.55 16 6 N -0.74 -39.37 5.28 -343.46 -1.81 -41.19 16 7 C -0.25 -14.44 9.99 84.03 0.84 -13.60 16 8 H 0.07 4.06 7.83 -2.92 -0.02 4.03 16 9 C -0.07 -4.30 5.50 84.86 0.47 -3.83 16 10 N -0.97 -60.32 13.06 21.65 0.28 -60.03 16 11 Si 0.98 46.98 29.55 68.60 2.03 49.01 16 12 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 13 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 14 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 15 C -0.07 -2.11 3.76 -19.87 -0.07 -2.19 16 16 C -0.13 -3.49 8.71 22.27 0.19 -3.30 16 17 C -0.12 -2.70 10.05 22.27 0.22 -2.48 16 18 C -0.13 -2.57 10.05 22.27 0.22 -2.34 16 19 C -0.12 -2.57 10.05 22.27 0.22 -2.34 16 20 C -0.13 -3.40 9.67 22.27 0.22 -3.18 16 21 H 0.06 1.50 7.38 -2.39 -0.02 1.48 16 22 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 23 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 24 H 0.05 1.84 7.07 -2.39 -0.02 1.83 16 25 H 0.06 1.98 7.21 -2.39 -0.02 1.96 16 26 H 0.01 0.43 8.14 -2.38 -0.02 0.41 16 27 H 0.02 0.87 7.59 -2.39 -0.02 0.85 16 28 H 0.38 20.94 6.85 -92.70 -0.63 20.31 16 29 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 30 H 0.12 3.19 7.13 -2.91 -0.02 3.17 16 31 H 0.14 2.37 8.06 -2.91 -0.02 2.34 16 32 H 0.15 1.97 8.06 -2.91 -0.02 1.94 16 33 H 0.14 2.22 8.06 -2.91 -0.02 2.19 16 34 H 0.12 2.99 7.95 -2.91 -0.02 2.97 16 Total: -1.00 -65.29 283.19 4.54 -60.75 By element: Atomic # 1 Polarization: 24.91 SS G_CDS: 0.43 Total: 25.34 kcal Atomic # 6 Polarization: -37.49 SS G_CDS: 3.61 Total: -33.87 kcal Atomic # 7 Polarization: -99.69 SS G_CDS: -1.53 Total: -101.22 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 2.03 Total: 49.01 kcal Total: -65.29 4.54 -60.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308750057.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.709 kcal (2) G-P(sol) polarization free energy of solvation -65.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds