Wall clock time and date at job start Mon Mar 30 2020 02:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47095 * 2 1 4 4 N 1.46898 * 109.47399 * 119.99723 * 2 1 3 5 5 C 1.46899 * 110.99539 * 85.00216 * 4 2 1 6 6 C 1.50704 * 109.47310 * 180.02562 * 5 4 2 7 7 C 1.38637 * 119.74934 * 269.73046 * 6 5 4 8 8 C 1.37618 * 120.24535 * 179.71502 * 7 6 5 9 9 C 1.40711 * 119.74757 * 0.57229 * 8 7 6 10 10 C 1.41394 * 120.24494 * 179.67746 * 9 8 7 11 11 H 1.08004 * 120.00147 * 204.40075 * 10 9 8 12 12 C 1.39939 * 119.99918 * 24.40383 * 10 9 8 13 13 N 1.30820 * 120.00244 * 17.85315 * 12 10 9 14 14 Si 1.86804 * 120.00028 * 197.85693 * 12 10 9 15 15 H 1.48496 * 109.47066 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47417 * 119.99935 * 14 12 10 17 17 H 1.48503 * 109.47002 * 239.99767 * 14 12 10 18 18 C 1.40719 * 119.51046 * 359.70412 * 9 8 7 19 19 C 1.37618 * 119.74314 * 359.97438 * 18 9 8 20 20 H 1.09003 * 109.47333 * 59.99928 * 1 2 3 21 21 H 1.08997 * 109.47086 * 180.02562 * 1 2 3 22 22 H 1.09009 * 109.47121 * 299.99817 * 1 2 3 23 23 H 1.08997 * 109.46845 * 240.00461 * 2 1 3 24 24 H 1.08997 * 109.47290 * 180.02562 * 3 2 1 25 25 H 1.09003 * 109.47089 * 300.00222 * 3 2 1 26 26 H 1.09001 * 109.47263 * 60.00150 * 3 2 1 27 27 H 1.00898 * 111.00021 * 321.05255 * 4 2 1 28 28 H 1.08999 * 109.47416 * 59.99975 * 5 4 2 29 29 H 1.09002 * 109.47149 * 299.99479 * 5 4 2 30 30 H 1.08000 * 119.87053 * 359.96934 * 7 6 5 31 31 H 1.07998 * 120.12413 * 180.27440 * 8 7 6 32 32 H 0.96997 * 120.00535 * 180.02562 * 13 12 10 33 33 H 1.08001 * 120.12523 * 179.97438 * 18 9 8 34 34 H 1.08004 * 119.87152 * 179.97438 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 2.0825 -2.1437 0.9806 6 6 2.5875 -2.8187 2.2298 7 6 3.9482 -3.0229 2.3994 8 6 4.4209 -3.6330 3.5388 9 6 3.5165 -4.0609 4.5282 10 6 3.9902 -4.6950 5.6998 11 1 3.3426 -5.3579 6.2545 12 6 5.2980 -4.4637 6.1406 13 7 5.9624 -3.4259 5.7014 14 14 6.0951 -5.6368 7.3563 15 1 5.1402 -6.7222 7.6957 16 1 7.3170 -6.2236 6.7497 17 1 6.4618 -4.8968 8.5906 18 6 2.1371 -3.8536 4.3427 19 6 1.6874 -3.2353 3.1984 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3634 0.5138 0.8901 23 1 1.8933 -0.5138 -0.8900 24 1 3.1300 1.4426 -0.0005 25 1 1.6766 1.9564 -0.8900 26 1 1.6767 1.9564 0.8900 27 1 1.4496 -0.4721 2.0022 28 1 2.7589 -2.3574 0.1530 29 1 1.0871 -2.5186 0.7426 30 1 4.6400 -2.6982 1.6363 31 1 5.4816 -3.7871 3.6708 32 1 6.8691 -3.2657 6.0066 33 1 1.4341 -4.1784 5.0955 34 1 0.6291 -3.0755 3.0537 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398981045.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:51 Heat of formation + Delta-G solvation = -0.631508 kcal Electronic energy + Delta-G solvation = -14182.076306 eV Core-core repulsion = 11885.558723 eV Total energy + Delta-G solvation = -2296.517582 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -37.92714 -36.61395 -33.82574 -31.67830 -29.36018 -28.99355 -27.03598 -25.91371 -23.04195 -20.96690 -20.55552 -19.79710 -17.26269 -15.44808 -15.25424 -15.01764 -14.19298 -13.94950 -13.58310 -13.15643 -13.01389 -12.44981 -12.21897 -11.97168 -11.89804 -11.61156 -11.38437 -11.16276 -11.00656 -10.88125 -10.73685 -10.38521 -10.33271 -9.55088 -9.33377 -9.09794 -7.95488 -7.40250 -7.26352 -6.72765 -4.31769 2.76861 3.08788 3.11722 3.14392 3.19971 3.95391 4.49945 4.82520 5.02339 5.24178 5.43555 5.66069 5.74524 5.78906 5.87032 5.93082 6.02729 6.04465 6.24807 6.30471 6.39590 6.42270 6.49652 6.99599 7.10527 7.33811 7.40153 7.52460 7.65497 7.80705 7.95235 8.09549 8.19532 8.33971 8.68580 8.93139 9.01851 10.21601 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.059336 B = 0.005614 C = 0.005355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.771858 B = 4985.978297 C = 5227.434865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.074 3.926 3 C -0.138 4.138 4 N -0.680 5.680 5 C 0.124 3.876 6 C -0.213 4.213 7 C -0.079 4.079 8 C -0.168 4.168 9 C 0.112 3.888 10 C -0.464 4.464 11 H 0.077 0.923 12 C 0.076 3.924 13 N -0.792 5.792 14 Si 0.906 3.094 15 H -0.261 1.261 16 H -0.272 1.272 17 H -0.275 1.275 18 C -0.228 4.228 19 C -0.086 4.086 20 H 0.055 0.945 21 H 0.052 0.948 22 H 0.055 0.945 23 H 0.071 0.929 24 H 0.060 0.940 25 H 0.049 0.951 26 H 0.052 0.948 27 H 0.340 0.660 28 H 0.060 0.940 29 H 0.017 0.983 30 H 0.087 0.913 31 H 0.117 0.883 32 H 0.280 0.720 33 H 0.090 0.910 34 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.846 3.972 -6.886 9.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.036 4.036 3 C -0.196 4.196 4 N -0.311 5.311 5 C -0.003 4.003 6 C -0.215 4.215 7 C -0.098 4.098 8 C -0.187 4.187 9 C 0.109 3.891 10 C -0.494 4.494 11 H 0.095 0.905 12 C -0.142 4.142 13 N -0.417 5.417 14 Si 0.730 3.270 15 H -0.184 1.184 16 H -0.197 1.197 17 H -0.200 1.200 18 C -0.247 4.247 19 C -0.105 4.105 20 H 0.074 0.926 21 H 0.071 0.929 22 H 0.074 0.926 23 H 0.090 0.910 24 H 0.079 0.921 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.158 0.842 28 H 0.079 0.921 29 H 0.035 0.965 30 H 0.105 0.895 31 H 0.135 0.865 32 H 0.091 0.909 33 H 0.108 0.892 34 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.953 4.199 -7.015 9.081 hybrid contribution -0.564 -0.624 0.658 1.068 sum -4.516 3.575 -6.356 8.578 Atomic orbital electron populations 1.22525 0.98011 1.01675 1.01852 1.21569 0.92062 0.95541 0.94444 1.21760 1.01783 0.95281 1.00770 1.60759 1.56936 1.08741 1.04659 1.20583 0.97404 0.85872 0.96472 1.18933 0.93754 1.10921 0.97863 1.20504 0.93661 0.98644 0.97019 1.21316 0.99929 1.04292 0.93168 1.17627 0.90787 0.88735 0.91946 1.19623 0.97008 1.24585 1.08135 0.90498 1.25905 0.97156 0.94441 0.96661 1.69843 1.11488 1.22563 1.37809 0.86302 0.79554 0.81119 0.79976 1.18432 1.19711 1.20022 1.20929 0.95738 1.09400 0.98665 1.20352 0.96264 0.99319 0.94544 0.92614 0.92859 0.92598 0.91049 0.92077 0.93149 0.92898 0.84182 0.92142 0.96457 0.89490 0.86520 0.90950 0.89193 0.89982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.10 9.16 37.16 0.34 -1.76 16 2 C 0.07 0.99 3.20 -67.71 -0.22 0.77 16 3 C -0.14 -1.66 9.52 37.16 0.35 -1.30 16 4 N -0.68 -11.31 6.24 -107.99 -0.67 -11.99 16 5 C 0.12 2.25 5.60 -4.97 -0.03 2.22 16 6 C -0.21 -4.70 5.41 -104.33 -0.56 -5.26 16 7 C -0.08 -1.90 9.67 -39.66 -0.38 -2.28 16 8 C -0.17 -4.45 8.70 -38.87 -0.34 -4.79 16 9 C 0.11 3.03 5.57 -106.83 -0.60 2.43 16 10 C -0.46 -12.51 9.05 -37.74 -0.34 -12.85 16 11 H 0.08 2.00 7.91 -52.48 -0.41 1.58 16 12 C 0.08 1.94 5.14 -17.35 -0.09 1.85 16 13 N -0.79 -20.83 10.95 55.55 0.61 -20.22 16 14 Si 0.91 18.83 29.60 -169.99 -5.03 13.80 16 15 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 16 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 17 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 18 C -0.23 -5.68 9.80 -38.87 -0.38 -6.07 16 19 C -0.09 -1.94 9.67 -39.66 -0.38 -2.33 16 20 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 21 H 0.05 0.64 7.45 -51.93 -0.39 0.26 16 22 H 0.05 0.64 8.13 -51.92 -0.42 0.21 16 23 H 0.07 0.94 7.80 -51.93 -0.40 0.54 16 24 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.34 5.71 8.46 -39.29 -0.33 5.38 16 28 H 0.06 1.06 7.99 -51.93 -0.42 0.65 16 29 H 0.02 0.29 7.37 -51.93 -0.38 -0.09 16 30 H 0.09 1.93 8.06 -52.49 -0.42 1.51 16 31 H 0.12 3.20 6.16 -52.49 -0.32 2.87 16 32 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 33 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 34 H 0.08 1.63 8.06 -52.48 -0.42 1.21 16 LS Contribution 284.91 15.07 4.29 4.29 Total: -1.00 -27.27 284.91 -8.61 -35.87 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -5.18 Total: 7.61 kcal Atomic # 6 Polarization: -26.75 SS G_CDS: -2.63 Total: -29.38 kcal Atomic # 7 Polarization: -32.14 SS G_CDS: -0.07 Total: -32.21 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.03 Total: 13.80 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -27.27 -8.61 -35.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398981045.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.241 kcal (2) G-P(sol) polarization free energy of solvation -27.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds