Wall clock time and date at job start Mon Mar 30 2020 02:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47095 * 2 1 4 4 N 1.46898 * 109.47399 * 119.99723 * 2 1 3 5 5 C 1.46899 * 110.99539 * 85.00216 * 4 2 1 6 6 C 1.50704 * 109.47310 * 180.02562 * 5 4 2 7 7 C 1.38637 * 119.74934 * 269.73046 * 6 5 4 8 8 C 1.37618 * 120.24535 * 179.71502 * 7 6 5 9 9 C 1.40711 * 119.74757 * 0.57229 * 8 7 6 10 10 C 1.41394 * 120.24494 * 179.67746 * 9 8 7 11 11 H 1.08004 * 120.00147 * 204.40075 * 10 9 8 12 12 C 1.39939 * 119.99918 * 24.40383 * 10 9 8 13 13 N 1.30820 * 120.00244 * 17.85315 * 12 10 9 14 14 Si 1.86804 * 120.00028 * 197.85693 * 12 10 9 15 15 H 1.48496 * 109.47066 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47417 * 119.99935 * 14 12 10 17 17 H 1.48503 * 109.47002 * 239.99767 * 14 12 10 18 18 C 1.40719 * 119.51046 * 359.70412 * 9 8 7 19 19 C 1.37618 * 119.74314 * 359.97438 * 18 9 8 20 20 H 1.09003 * 109.47333 * 59.99928 * 1 2 3 21 21 H 1.08997 * 109.47086 * 180.02562 * 1 2 3 22 22 H 1.09009 * 109.47121 * 299.99817 * 1 2 3 23 23 H 1.08997 * 109.46845 * 240.00461 * 2 1 3 24 24 H 1.08997 * 109.47290 * 180.02562 * 3 2 1 25 25 H 1.09003 * 109.47089 * 300.00222 * 3 2 1 26 26 H 1.09001 * 109.47263 * 60.00150 * 3 2 1 27 27 H 1.00898 * 111.00021 * 321.05255 * 4 2 1 28 28 H 1.08999 * 109.47416 * 59.99975 * 5 4 2 29 29 H 1.09002 * 109.47149 * 299.99479 * 5 4 2 30 30 H 1.08000 * 119.87053 * 359.96934 * 7 6 5 31 31 H 1.07998 * 120.12413 * 180.27440 * 8 7 6 32 32 H 0.96997 * 120.00535 * 180.02562 * 13 12 10 33 33 H 1.08001 * 120.12523 * 179.97438 * 18 9 8 34 34 H 1.08004 * 119.87152 * 179.97438 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 2.0825 -2.1437 0.9806 6 6 2.5875 -2.8187 2.2298 7 6 3.9482 -3.0229 2.3994 8 6 4.4209 -3.6330 3.5388 9 6 3.5165 -4.0609 4.5282 10 6 3.9902 -4.6950 5.6998 11 1 3.3426 -5.3579 6.2545 12 6 5.2980 -4.4637 6.1406 13 7 5.9624 -3.4259 5.7014 14 14 6.0951 -5.6368 7.3563 15 1 5.1402 -6.7222 7.6957 16 1 7.3170 -6.2236 6.7497 17 1 6.4618 -4.8968 8.5906 18 6 2.1371 -3.8536 4.3427 19 6 1.6874 -3.2353 3.1984 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3634 0.5138 0.8901 23 1 1.8933 -0.5138 -0.8900 24 1 3.1300 1.4426 -0.0005 25 1 1.6766 1.9564 -0.8900 26 1 1.6767 1.9564 0.8900 27 1 1.4496 -0.4721 2.0022 28 1 2.7589 -2.3574 0.1530 29 1 1.0871 -2.5186 0.7426 30 1 4.6400 -2.6982 1.6363 31 1 5.4816 -3.7871 3.6708 32 1 6.8691 -3.2657 6.0066 33 1 1.4341 -4.1784 5.0955 34 1 0.6291 -3.0755 3.0537 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398981045.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:51 Heat of formation + Delta-G solvation = -15.842147 kcal Electronic energy + Delta-G solvation = -14182.735889 eV Core-core repulsion = 11885.558723 eV Total energy + Delta-G solvation = -2297.177165 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.65010 -37.97775 -35.65051 -33.21104 -31.21550 -30.69445 -27.95186 -27.64732 -24.71247 -22.85351 -21.76975 -21.49529 -19.21100 -17.19939 -16.73023 -16.22306 -15.77384 -15.65144 -15.14125 -14.54045 -14.39579 -14.02879 -13.78731 -13.54744 -13.16322 -13.02818 -12.83525 -12.69958 -12.64312 -12.19993 -12.14009 -11.97782 -11.70007 -11.37744 -11.20447 -10.99541 -9.33672 -9.32081 -9.08489 -8.62379 -6.32397 0.95906 1.16311 1.38159 1.50236 1.53898 2.21482 2.70464 3.44787 3.83089 4.03891 4.24410 4.31832 4.39422 4.48861 4.58168 4.65811 4.80074 4.82656 4.97005 5.00343 5.07456 5.11054 5.17434 5.29481 5.39388 5.45959 5.48345 5.72839 5.96490 6.11807 6.23410 6.33963 6.40702 6.58897 6.72747 6.95691 7.05961 8.34715 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.059336 B = 0.005614 C = 0.005355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.771858 B = 4985.978297 C = 5227.434865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.072 3.928 3 C -0.135 4.135 4 N -0.694 5.694 5 C 0.132 3.868 6 C -0.201 4.201 7 C -0.087 4.087 8 C -0.192 4.192 9 C 0.078 3.922 10 C -0.503 4.503 11 H 0.074 0.926 12 C 0.035 3.965 13 N -0.827 5.827 14 Si 0.982 3.018 15 H -0.258 1.258 16 H -0.264 1.264 17 H -0.265 1.265 18 C -0.244 4.244 19 C -0.085 4.085 20 H 0.075 0.925 21 H 0.048 0.952 22 H 0.056 0.944 23 H 0.074 0.926 24 H 0.047 0.953 25 H 0.074 0.926 26 H 0.050 0.950 27 H 0.338 0.662 28 H 0.066 0.934 29 H 0.035 0.965 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.287 0.713 33 H 0.096 0.904 34 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.787 4.456 -7.800 10.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.037 4.037 3 C -0.193 4.193 4 N -0.325 5.325 5 C 0.004 3.996 6 C -0.203 4.203 7 C -0.106 4.106 8 C -0.212 4.212 9 C 0.076 3.924 10 C -0.533 4.533 11 H 0.092 0.908 12 C -0.180 4.180 13 N -0.453 5.453 14 Si 0.803 3.197 15 H -0.182 1.182 16 H -0.188 1.188 17 H -0.190 1.190 18 C -0.263 4.263 19 C -0.104 4.104 20 H 0.094 0.906 21 H 0.067 0.933 22 H 0.075 0.925 23 H 0.092 0.908 24 H 0.066 0.934 25 H 0.093 0.907 26 H 0.069 0.931 27 H 0.156 0.844 28 H 0.084 0.916 29 H 0.053 0.947 30 H 0.118 0.882 31 H 0.116 0.884 32 H 0.098 0.902 33 H 0.114 0.886 34 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -4.909 4.698 -7.948 10.457 hybrid contribution -0.358 -0.673 0.808 1.111 sum -5.267 4.025 -7.140 9.743 Atomic orbital electron populations 1.22444 0.96376 1.01711 1.02900 1.21667 0.93394 0.95744 0.92903 1.21738 1.00955 0.94692 1.01886 1.60686 1.57906 1.07814 1.06113 1.20477 0.98216 0.86674 0.94234 1.19385 0.92852 1.09066 0.98952 1.20737 0.95126 0.98218 0.96520 1.21277 0.99149 1.06227 0.94525 1.17977 0.92025 0.89854 0.92564 1.19868 0.98505 1.25930 1.08989 0.90772 1.26771 0.97081 0.95705 0.98443 1.69896 1.12127 1.24006 1.39282 0.85162 0.78425 0.78605 0.77508 1.18151 1.18849 1.18997 1.21158 0.95162 1.10019 0.99990 1.20686 0.98099 0.98014 0.93577 0.90636 0.93302 0.92522 0.90777 0.93367 0.90748 0.93082 0.84388 0.91564 0.94726 0.88165 0.88409 0.90199 0.88627 0.86728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.48 9.16 71.98 0.66 -2.82 16 2 C 0.07 1.72 3.20 44.92 0.14 1.86 16 3 C -0.13 -2.90 9.52 71.98 0.69 -2.21 16 4 N -0.69 -21.52 6.24 -495.58 -3.09 -24.61 16 5 C 0.13 4.43 5.60 85.56 0.48 4.91 16 6 C -0.20 -8.60 5.41 -19.67 -0.11 -8.71 16 7 C -0.09 -4.19 9.67 22.22 0.21 -3.97 16 8 C -0.19 -10.53 8.70 22.73 0.20 -10.33 16 9 C 0.08 4.37 5.57 -21.29 -0.12 4.25 16 10 C -0.50 -28.08 9.05 23.46 0.21 -27.87 16 11 H 0.07 4.00 7.91 -2.91 -0.02 3.97 16 12 C 0.03 1.79 5.14 85.26 0.44 2.23 16 13 N -0.83 -44.78 10.95 21.82 0.24 -44.55 16 14 Si 0.98 39.15 29.60 68.60 2.03 41.18 16 15 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 16 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 17 H -0.27 -10.08 7.11 99.48 0.71 -9.37 16 18 C -0.24 -12.28 9.80 22.73 0.22 -12.05 16 19 C -0.09 -3.74 9.67 22.22 0.21 -3.52 16 20 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 21 H 0.05 1.01 7.45 -2.39 -0.02 1.00 16 22 H 0.06 1.12 8.13 -2.38 -0.02 1.10 16 23 H 0.07 1.73 7.80 -2.39 -0.02 1.71 16 24 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.34 10.63 8.46 -89.70 -0.76 9.87 16 28 H 0.07 2.16 7.99 -2.39 -0.02 2.14 16 29 H 0.03 1.06 7.37 -2.39 -0.02 1.04 16 30 H 0.10 4.44 8.06 -2.91 -0.02 4.42 16 31 H 0.10 5.62 6.16 -2.91 -0.02 5.61 16 32 H 0.29 14.00 8.30 -92.71 -0.77 13.23 16 33 H 0.10 4.56 8.06 -2.91 -0.02 4.54 16 34 H 0.11 4.24 8.06 -2.91 -0.02 4.22 16 Total: -1.00 -59.54 284.91 2.73 -56.81 By element: Atomic # 1 Polarization: 29.08 SS G_CDS: 0.31 Total: 29.39 kcal Atomic # 6 Polarization: -61.48 SS G_CDS: 3.24 Total: -58.24 kcal Atomic # 7 Polarization: -66.30 SS G_CDS: -2.85 Total: -69.15 kcal Atomic # 14 Polarization: 39.15 SS G_CDS: 2.03 Total: 41.18 kcal Total: -59.54 2.73 -56.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398981045.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.970 kcal (2) G-P(sol) polarization free energy of solvation -59.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds