Wall clock time and date at job start Mon Mar 30 2020 02:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 O 1.42099 * 110.54520 * 2 1 4 4 O 1.42105 * 110.54406 * 223.24317 * 2 1 3 5 5 O 1.52206 * 104.44635 * 111.61889 * 2 1 3 6 6 C 1.42905 * 113.99756 * 75.00300 * 5 2 1 7 7 C 1.53002 * 109.47079 * 180.02562 * 6 5 2 8 8 H 1.08996 * 112.88226 * 45.32665 * 7 6 5 9 9 C 1.53834 * 113.65727 * 176.66386 * 7 6 5 10 10 C 1.51587 * 86.75497 * 139.26813 * 9 7 6 11 11 C 1.37876 * 135.78062 * 154.84220 * 10 9 7 12 12 N 1.31516 * 120.00108 * 359.97438 * 11 10 9 13 13 Si 1.86795 * 119.99846 * 179.97438 * 11 10 9 14 14 H 1.48502 * 109.47467 * 359.97438 * 13 11 10 15 15 H 1.48504 * 109.47187 * 120.00155 * 13 11 10 16 16 H 1.48505 * 109.47060 * 239.99877 * 13 11 10 17 17 C 1.51766 * 88.46739 * 334.92270 * 10 9 7 18 18 H 1.09003 * 109.47518 * 308.37926 * 1 2 3 19 19 H 1.09006 * 109.47030 * 68.37906 * 1 2 3 20 20 H 1.09002 * 109.47608 * 188.38055 * 1 2 3 21 21 H 1.09004 * 109.47054 * 299.99708 * 6 5 2 22 22 H 1.09000 * 109.47187 * 59.99763 * 6 5 2 23 23 H 1.09000 * 113.66534 * 253.73242 * 9 7 6 24 24 H 1.08998 * 113.66744 * 24.71284 * 9 7 6 25 25 H 0.97000 * 120.00050 * 179.97438 * 12 11 10 26 26 H 1.08999 * 113.66891 * 270.64406 * 17 10 9 27 27 H 1.09000 * 113.72464 * 139.52045 * 17 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3126 -0.9693 -0.9116 5 8 2.1937 -0.5430 1.3702 6 6 2.0115 -1.9538 1.5072 7 6 2.4217 -2.3866 2.9163 8 1 2.0296 -1.7294 3.6924 9 6 2.1869 -3.8810 3.1959 10 6 3.5215 -3.8678 3.9147 11 6 4.1125 -4.6104 4.9148 12 7 3.4583 -5.6090 5.4666 13 14 5.8426 -4.1982 5.4859 14 1 6.3570 -3.0403 4.7114 15 1 5.8187 -3.8566 6.9309 16 1 6.7279 -5.3707 5.2691 17 6 3.9249 -2.6815 3.0584 18 1 -0.3634 0.6380 0.8056 19 1 -0.3633 0.3787 -0.9554 20 1 -0.3634 -1.0167 0.1498 21 1 0.9632 -2.2025 1.3419 22 1 2.6282 -2.4727 0.7734 23 1 1.3385 -4.0753 3.8520 24 1 2.1784 -4.4981 2.2975 25 1 3.8743 -6.1317 6.1699 26 1 4.4063 -2.9617 2.1215 27 1 4.4719 -1.9126 3.6040 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584600728.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:57 Heat of formation + Delta-G solvation = -123.938690 kcal Electronic energy + Delta-G solvation = -13294.343734 eV Core-core repulsion = 10758.538251 eV Total energy + Delta-G solvation = -2535.805483 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 220.060 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.64020 -38.31799 -38.13460 -37.06496 -33.86291 -30.40459 -29.31341 -26.13245 -24.80566 -21.38531 -21.12434 -19.01222 -18.31047 -17.82797 -17.31503 -16.41220 -16.16627 -15.73985 -15.08092 -14.62633 -14.16269 -13.97077 -13.91339 -13.31299 -13.22238 -13.15112 -12.97019 -12.82812 -12.66192 -12.35732 -11.89363 -11.79055 -11.38496 -11.07793 -10.62173 -10.38243 -8.24823 -6.22616 -0.61649 1.33797 1.38272 1.41069 1.54458 2.37050 2.85270 3.01121 3.13924 3.69733 3.88330 4.07819 4.16703 4.31964 4.42282 4.69059 4.76753 4.94304 5.01466 5.08795 5.25936 5.28561 5.57187 5.84551 6.27167 6.57897 7.45849 8.87295 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.060941 B = 0.006976 C = 0.006571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.349252 B = 4012.519953 C = 4260.007588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.674 4.674 2 S 2.623 3.377 3 O -0.988 6.988 4 O -1.006 7.006 5 O -0.742 6.742 6 C 0.068 3.932 7 C -0.085 4.085 8 H 0.091 0.909 9 C -0.016 4.016 10 C -0.545 4.545 11 C 0.042 3.958 12 N -0.929 5.929 13 Si 0.956 3.044 14 H -0.261 1.261 15 H -0.276 1.276 16 H -0.276 1.276 17 C -0.047 4.047 18 H 0.150 0.850 19 H 0.155 0.845 20 H 0.151 0.849 21 H 0.122 0.878 22 H 0.093 0.907 23 H 0.021 0.979 24 H 0.039 0.961 25 H 0.268 0.732 26 H 0.040 0.960 27 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.447 9.165 -9.129 14.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.825 4.825 2 S 2.720 3.280 3 O -0.986 6.986 4 O -1.004 7.004 5 O -0.706 6.706 6 C -0.004 4.004 7 C -0.105 4.105 8 H 0.110 0.890 9 C -0.054 4.054 10 C -0.564 4.564 11 C -0.156 4.156 12 N -0.568 5.568 13 Si 0.780 3.220 14 H -0.185 1.185 15 H -0.201 1.201 16 H -0.202 1.202 17 C -0.085 4.085 18 H 0.168 0.832 19 H 0.174 0.826 20 H 0.169 0.831 21 H 0.140 0.860 22 H 0.112 0.888 23 H 0.040 0.960 24 H 0.057 0.943 25 H 0.078 0.922 26 H 0.058 0.942 27 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -6.681 9.230 -9.070 14.563 hybrid contribution 0.209 -0.178 0.512 0.581 sum -6.473 9.052 -8.558 14.038 Atomic orbital electron populations 1.30521 1.23842 1.14032 1.14129 1.04062 0.79255 0.72908 0.71797 1.93554 1.79824 1.39874 1.85394 1.93575 1.79221 1.61450 1.66180 1.87152 1.88410 1.34744 1.60330 1.23461 1.04381 0.71384 1.01174 1.22375 0.97892 0.96922 0.93349 0.89042 1.20879 0.96444 0.91504 0.96562 1.21660 1.02228 1.14833 1.17642 1.24816 1.01416 0.93551 0.95820 1.69979 1.39473 1.20434 1.26952 0.85461 0.79529 0.78729 0.78305 1.18465 1.20140 1.20177 1.21369 0.94120 0.95888 0.97104 0.83165 0.82634 0.83076 0.86022 0.88840 0.96017 0.94320 0.92245 0.94208 0.95762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -7.56 10.70 113.37 1.21 -6.35 15 2 S 2.62 61.85 5.82 -56.49 -0.33 61.52 15 3 O -0.99 -31.16 18.09 -118.57 -2.15 -33.31 15 4 O -1.01 -29.94 16.45 -118.57 -1.95 -31.89 15 5 O -0.74 -21.28 10.13 -118.07 -1.20 -22.47 15 6 C 0.07 2.03 5.17 71.98 0.37 2.41 15 7 C -0.09 -3.35 4.02 -10.28 -0.04 -3.39 15 8 H 0.09 3.53 8.14 -2.39 -0.02 3.51 15 9 C -0.02 -0.76 7.62 30.41 0.23 -0.52 15 10 C -0.54 -29.04 6.76 -15.97 -0.11 -29.15 15 11 C 0.04 2.34 5.47 84.65 0.46 2.80 15 12 N -0.93 -54.39 13.96 21.45 0.30 -54.09 15 13 Si 0.96 43.62 29.15 68.60 2.00 45.62 15 14 H -0.26 -11.60 7.11 99.48 0.71 -10.89 15 15 H -0.28 -12.24 7.11 99.48 0.71 -11.53 15 16 H -0.28 -12.28 7.11 99.48 0.71 -11.57 15 17 C -0.05 -2.18 6.98 30.47 0.21 -1.97 15 18 H 0.15 1.30 8.14 -2.39 -0.02 1.28 15 19 H 0.16 1.07 8.14 -2.39 -0.02 1.05 15 20 H 0.15 1.17 7.30 -2.39 -0.02 1.15 15 21 H 0.12 2.38 7.08 -2.38 -0.02 2.36 15 22 H 0.09 2.89 6.94 -2.39 -0.02 2.88 15 23 H 0.02 1.03 8.14 -2.39 -0.02 1.01 15 24 H 0.04 1.71 8.10 -2.39 -0.02 1.69 15 25 H 0.27 14.71 8.31 -92.71 -0.77 13.94 15 26 H 0.04 1.78 7.92 -2.39 -0.02 1.76 15 27 H 0.02 1.11 8.10 -2.39 -0.02 1.09 15 Total: -1.00 -73.25 247.95 0.19 -73.06 By element: Atomic # 1 Polarization: -3.43 SS G_CDS: 1.16 Total: -2.26 kcal Atomic # 6 Polarization: -38.52 SS G_CDS: 2.34 Total: -36.18 kcal Atomic # 7 Polarization: -54.39 SS G_CDS: 0.30 Total: -54.09 kcal Atomic # 8 Polarization: -82.38 SS G_CDS: -5.29 Total: -87.68 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.00 Total: 45.62 kcal Atomic # 16 Polarization: 61.85 SS G_CDS: -0.33 Total: 61.52 kcal Total: -73.25 0.19 -73.06 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584600728.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.877 kcal (2) G-P(sol) polarization free energy of solvation -73.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds