Wall clock time and date at job start Mon Mar 30 2020 02:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.46726 * 2 1 4 4 S 1.52206 * 113.99800 * 179.97438 * 3 2 1 5 5 O 1.42091 * 104.27847 * 191.07109 * 4 3 2 6 6 O 1.42095 * 104.27835 * 318.93431 * 4 3 2 7 7 C 1.81408 * 104.44508 * 75.00268 * 4 3 2 8 8 H 1.08994 * 115.55009 * 325.58096 * 7 4 3 9 9 C 1.53002 * 117.49855 * 111.25436 * 7 4 3 10 10 C 1.52998 * 117.49599 * 179.91292 * 7 4 3 11 11 H 1.09000 * 117.50016 * 0.02562 * 10 7 4 12 12 C 1.50706 * 117.49996 * 145.01905 * 10 7 4 13 13 H 1.07997 * 119.99434 * 0.02562 * 12 10 7 14 14 C 1.37877 * 119.99885 * 179.97438 * 12 10 7 15 15 N 1.31506 * 120.00450 * 359.97438 * 14 12 10 16 16 Si 1.86801 * 119.99730 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47159 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.47263 * 119.99796 * 16 14 12 19 19 H 1.48501 * 109.47128 * 240.00010 * 16 14 12 20 20 H 1.08992 * 109.47399 * 59.99748 * 1 2 3 21 21 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47194 * 299.99575 * 1 2 3 23 23 H 1.09002 * 109.47398 * 120.00244 * 2 1 3 24 24 H 1.09001 * 109.47194 * 240.00425 * 2 1 3 25 25 H 1.08998 * 117.49645 * 214.97940 * 9 7 4 26 26 H 1.09000 * 117.49545 * 359.97408 * 9 7 4 27 27 H 0.96999 * 120.00548 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 16 3.5236 1.4676 0.0006 5 8 3.7660 2.8425 0.2649 6 8 3.9545 0.4604 0.9056 7 6 4.0113 1.0499 -1.6960 8 1 3.4012 0.2922 -2.1875 9 6 4.5772 2.1744 -2.5655 10 6 5.5041 1.0804 -2.0296 11 1 6.1932 1.3511 -1.2296 12 6 6.0184 0.0609 -3.0131 13 1 5.3398 -0.6546 -3.4536 14 6 7.3549 0.0423 -3.3513 15 7 8.1809 0.9144 -2.8161 16 14 7.9921 -1.2210 -4.5709 17 1 6.8695 -2.0802 -5.0258 18 1 8.5868 -0.5245 -5.7400 19 1 9.0266 -2.0624 -3.9172 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.8934 -0.5139 0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 4.3397 2.1563 -3.6291 26 1 4.6561 3.1653 -2.1182 27 1 9.1211 0.9016 -3.0543 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584602216.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:19 Heat of formation + Delta-G solvation = -103.341282 kcal Electronic energy + Delta-G solvation = -13356.837849 eV Core-core repulsion = 10821.925537 eV Total energy + Delta-G solvation = -2534.912312 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 220.060 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.22352 -36.65384 -36.19728 -35.49944 -32.36363 -31.60784 -25.95126 -23.60374 -22.66829 -20.76845 -19.84145 -17.78862 -16.98329 -16.53690 -16.15845 -15.21147 -14.73185 -14.23482 -13.40633 -13.11448 -12.88770 -12.54500 -12.11879 -11.88328 -11.68322 -11.61075 -11.34397 -11.19302 -11.08082 -10.88009 -10.59542 -10.25954 -9.70748 -9.46226 -9.38078 -8.54840 -6.31253 -4.33791 0.91107 2.71978 3.16782 3.25139 3.28552 4.17095 4.28696 4.33777 4.59363 4.72833 4.87062 5.09619 5.12772 5.41036 5.65523 5.68183 5.84434 5.92985 6.10343 6.30419 6.63174 6.73828 7.21139 7.63595 8.03301 8.66829 9.27871 10.78923 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.044242 B = 0.008144 C = 0.007524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.735617 B = 3437.112450 C = 3720.398903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.059 3.941 3 O -0.743 6.743 4 S 2.634 3.366 5 O -0.949 6.949 6 O -0.979 6.979 7 C -0.728 4.728 8 H 0.140 0.860 9 C -0.156 4.156 10 C 0.092 3.908 11 H 0.090 0.910 12 C -0.503 4.503 13 H 0.067 0.933 14 C 0.069 3.931 15 N -0.877 5.877 16 Si 0.906 3.094 17 H -0.270 1.270 18 H -0.280 1.280 19 H -0.279 1.279 20 H 0.069 0.931 21 H 0.080 0.920 22 H 0.069 0.931 23 H 0.098 0.902 24 H 0.083 0.917 25 H 0.095 0.905 26 H 0.093 0.907 27 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.344 -2.302 2.311 11.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.014 4.014 3 O -0.706 6.706 4 S 2.730 3.270 5 O -0.947 6.947 6 O -0.977 6.977 7 C -0.837 4.837 8 H 0.158 0.842 9 C -0.196 4.196 10 C 0.072 3.928 11 H 0.108 0.892 12 C -0.540 4.540 13 H 0.085 0.915 14 C -0.136 4.136 15 N -0.513 5.513 16 Si 0.733 3.267 17 H -0.195 1.195 18 H -0.206 1.206 19 H -0.205 1.205 20 H 0.088 0.912 21 H 0.099 0.901 22 H 0.088 0.912 23 H 0.116 0.884 24 H 0.101 0.899 25 H 0.114 0.886 26 H 0.112 0.888 27 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.269 -1.909 3.033 11.825 hybrid contribution 0.378 -0.843 -1.319 1.610 sum -10.891 -2.752 1.714 11.363 Atomic orbital electron populations 1.21830 0.92120 1.02954 1.03920 1.22927 0.98299 0.75871 1.04345 1.87217 1.50905 1.39248 1.93263 1.03869 0.72122 0.74168 0.76862 1.93545 1.82717 1.33929 1.84546 1.93541 1.81112 1.61448 1.61648 1.32598 1.14579 1.15220 1.21329 0.84187 1.22866 1.06774 0.92023 0.97939 1.19886 0.80503 0.94829 0.97591 0.89172 1.20644 0.93724 1.15499 1.24147 0.91521 1.25091 0.96523 0.95767 0.96254 1.69948 1.04581 1.34678 1.42068 0.86316 0.79018 0.80878 0.80532 1.19458 1.20590 1.20479 0.91170 0.90107 0.91209 0.88423 0.89864 0.88608 0.88847 0.92152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 10.28 37.16 0.38 -1.03 15 2 C 0.06 0.76 6.06 37.16 0.23 0.98 15 3 O -0.74 -12.13 10.13 -67.56 -0.68 -12.81 15 4 S 2.63 51.02 5.54 -107.50 -0.60 50.43 15 5 O -0.95 -21.06 17.38 -67.04 -1.17 -22.22 15 6 O -0.98 -20.67 16.45 -67.04 -1.10 -21.77 15 7 C -0.73 -14.77 6.00 -26.73 -0.16 -14.93 15 8 H 0.14 2.52 7.31 -51.93 -0.38 2.14 15 9 C -0.16 -3.39 9.87 -26.69 -0.26 -3.66 15 10 C 0.09 2.30 5.35 -91.73 -0.49 1.81 15 11 H 0.09 2.39 7.90 -51.93 -0.41 1.98 15 12 C -0.50 -13.42 9.20 -34.44 -0.32 -13.73 15 13 H 0.07 1.71 7.81 -52.49 -0.41 1.30 15 14 C 0.07 1.85 5.46 -17.82 -0.10 1.75 15 15 N -0.88 -24.67 13.13 55.43 0.73 -23.94 15 16 Si 0.91 20.30 29.54 -169.99 -5.02 15.28 15 17 H -0.27 -5.91 7.11 56.52 0.40 -5.51 15 18 H -0.28 -6.21 7.11 56.52 0.40 -5.80 15 19 H -0.28 -6.20 7.11 56.52 0.40 -5.80 15 20 H 0.07 0.64 8.14 -51.93 -0.42 0.22 15 21 H 0.08 0.55 8.14 -51.93 -0.42 0.13 15 22 H 0.07 0.64 8.14 -51.93 -0.42 0.22 15 23 H 0.10 1.21 7.20 -51.93 -0.37 0.83 15 24 H 0.08 0.92 7.09 -51.93 -0.37 0.56 15 25 H 0.10 1.98 8.14 -51.93 -0.42 1.56 15 26 H 0.09 1.94 7.66 -51.93 -0.40 1.54 15 27 H 0.27 7.04 8.31 -40.82 -0.34 6.70 15 LS Contribution 251.57 15.07 3.79 3.79 Total: -1.00 -32.07 251.57 -7.94 -40.00 By element: Atomic # 1 Polarization: 3.23 SS G_CDS: -3.17 Total: 0.07 kcal Atomic # 6 Polarization: -28.09 SS G_CDS: -0.72 Total: -28.82 kcal Atomic # 7 Polarization: -24.67 SS G_CDS: 0.73 Total: -23.94 kcal Atomic # 8 Polarization: -53.85 SS G_CDS: -2.95 Total: -56.81 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Atomic # 16 Polarization: 51.02 SS G_CDS: -0.60 Total: 50.43 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -32.07 -7.94 -40.00 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584602216.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.338 kcal (2) G-P(sol) polarization free energy of solvation -32.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds