Wall clock time and date at job start Mon Mar 30 2020 02:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.46726 * 2 1 4 4 S 1.52206 * 113.99800 * 179.97438 * 3 2 1 5 5 O 1.42091 * 104.27847 * 191.07109 * 4 3 2 6 6 O 1.42095 * 104.27835 * 318.93431 * 4 3 2 7 7 C 1.81408 * 104.44508 * 75.00268 * 4 3 2 8 8 H 1.08994 * 115.55009 * 325.58096 * 7 4 3 9 9 C 1.53002 * 117.49855 * 111.25436 * 7 4 3 10 10 C 1.52998 * 117.49599 * 179.91292 * 7 4 3 11 11 H 1.09000 * 117.50016 * 0.02562 * 10 7 4 12 12 C 1.50706 * 117.49996 * 145.01905 * 10 7 4 13 13 H 1.07997 * 119.99434 * 0.02562 * 12 10 7 14 14 C 1.37877 * 119.99885 * 179.97438 * 12 10 7 15 15 N 1.31506 * 120.00450 * 359.97438 * 14 12 10 16 16 Si 1.86801 * 119.99730 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47159 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.47263 * 119.99796 * 16 14 12 19 19 H 1.48501 * 109.47128 * 240.00010 * 16 14 12 20 20 H 1.08992 * 109.47399 * 59.99748 * 1 2 3 21 21 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47194 * 299.99575 * 1 2 3 23 23 H 1.09002 * 109.47398 * 120.00244 * 2 1 3 24 24 H 1.09001 * 109.47194 * 240.00425 * 2 1 3 25 25 H 1.08998 * 117.49645 * 214.97940 * 9 7 4 26 26 H 1.09000 * 117.49545 * 359.97408 * 9 7 4 27 27 H 0.96999 * 120.00548 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 16 3.5236 1.4676 0.0006 5 8 3.7660 2.8425 0.2649 6 8 3.9545 0.4604 0.9056 7 6 4.0113 1.0499 -1.6960 8 1 3.4012 0.2922 -2.1875 9 6 4.5772 2.1744 -2.5655 10 6 5.5041 1.0804 -2.0296 11 1 6.1932 1.3511 -1.2296 12 6 6.0184 0.0609 -3.0131 13 1 5.3398 -0.6546 -3.4536 14 6 7.3549 0.0423 -3.3513 15 7 8.1809 0.9144 -2.8161 16 14 7.9921 -1.2210 -4.5709 17 1 6.8695 -2.0802 -5.0258 18 1 8.5868 -0.5245 -5.7400 19 1 9.0266 -2.0624 -3.9172 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.8934 -0.5139 0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 4.3397 2.1563 -3.6291 26 1 4.6561 3.1653 -2.1182 27 1 9.1211 0.9016 -3.0543 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584602216.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:19 Heat of formation + Delta-G solvation = -126.138423 kcal Electronic energy + Delta-G solvation = -13357.826407 eV Core-core repulsion = 10821.925537 eV Total energy + Delta-G solvation = -2535.900870 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 220.060 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.53354 -38.33624 -37.97573 -37.16557 -34.34545 -32.51195 -27.94542 -24.61217 -24.28570 -22.62040 -21.27899 -19.46447 -18.61967 -18.18938 -17.57127 -16.63375 -16.53213 -15.67519 -15.12065 -14.54235 -14.23607 -13.77382 -13.69379 -13.33650 -13.29691 -13.09066 -12.99004 -12.88131 -12.57796 -12.34078 -12.10653 -11.76824 -11.45445 -11.33371 -11.24224 -10.48868 -8.30620 -6.39775 -0.66549 1.32227 1.42596 1.43556 1.56342 2.34465 2.56371 2.71418 3.02218 3.28953 3.77620 3.92765 3.96588 4.15282 4.26843 4.35298 4.49441 4.87798 4.89700 4.99206 5.05189 5.27581 5.28647 5.62521 6.06070 6.66017 7.25464 8.81401 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.044242 B = 0.008144 C = 0.007524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.735617 B = 3437.112450 C = 3720.398903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.032 3.968 3 O -0.735 6.735 4 S 2.664 3.336 5 O -0.980 6.980 6 O -0.998 6.998 7 C -0.704 4.704 8 H 0.167 0.833 9 C -0.150 4.150 10 C 0.046 3.954 11 H 0.061 0.939 12 C -0.520 4.520 13 H 0.073 0.927 14 C 0.014 3.986 15 N -0.920 5.920 16 Si 0.975 3.025 17 H -0.258 1.258 18 H -0.276 1.276 19 H -0.277 1.277 20 H 0.074 0.926 21 H 0.112 0.888 22 H 0.070 0.930 23 H 0.100 0.900 24 H 0.103 0.897 25 H 0.107 0.893 26 H 0.098 0.902 27 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.057 -3.481 1.544 13.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.040 4.040 3 O -0.700 6.700 4 S 2.758 3.242 5 O -0.978 6.978 6 O -0.997 6.997 7 C -0.812 4.812 8 H 0.185 0.815 9 C -0.189 4.189 10 C 0.026 3.974 11 H 0.079 0.921 12 C -0.557 4.557 13 H 0.091 0.909 14 C -0.187 4.187 15 N -0.557 5.557 16 Si 0.799 3.201 17 H -0.182 1.182 18 H -0.202 1.202 19 H -0.203 1.203 20 H 0.093 0.907 21 H 0.131 0.869 22 H 0.089 0.911 23 H 0.118 0.882 24 H 0.121 0.879 25 H 0.125 0.875 26 H 0.116 0.884 27 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.990 -3.092 2.257 13.542 hybrid contribution 0.772 -0.486 -1.004 1.356 sum -12.218 -3.577 1.253 12.793 Atomic orbital electron populations 1.21923 0.89280 1.05131 1.04250 1.23581 1.00771 0.74114 1.05576 1.87228 1.48409 1.41372 1.93017 1.02891 0.72407 0.72973 0.75880 1.93501 1.83889 1.35680 1.84770 1.93510 1.82119 1.61927 1.62124 1.32593 1.11592 1.14817 1.22223 0.81506 1.22879 1.04931 0.92079 0.98995 1.19759 0.82640 0.97051 0.97980 0.92057 1.21001 0.94299 1.15871 1.24513 0.90859 1.25999 0.96835 0.97758 0.98116 1.70069 1.04934 1.36769 1.43961 0.85251 0.78519 0.78336 0.78040 1.18217 1.20173 1.20306 0.90682 0.86947 0.91113 0.88208 0.87925 0.87453 0.88375 0.92048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 10.28 71.98 0.74 -1.54 15 2 C 0.03 0.73 6.06 71.98 0.44 1.17 15 3 O -0.74 -22.46 10.13 -118.07 -1.20 -23.66 15 4 S 2.66 100.52 5.54 -56.49 -0.31 100.21 15 5 O -0.98 -43.16 17.38 -118.57 -2.06 -45.22 15 6 O -1.00 -41.43 16.45 -118.57 -1.95 -43.38 15 7 C -0.70 -27.62 6.00 30.59 0.18 -27.43 15 8 H 0.17 5.53 7.31 -2.39 -0.02 5.52 15 9 C -0.15 -6.38 9.87 30.62 0.30 -6.08 15 10 C 0.05 2.31 5.35 -11.51 -0.06 2.24 15 11 H 0.06 3.39 7.90 -2.39 -0.02 3.37 15 12 C -0.52 -27.67 9.20 25.60 0.24 -27.43 15 13 H 0.07 3.68 7.81 -2.91 -0.02 3.66 15 14 C 0.01 0.74 5.46 84.66 0.46 1.20 15 15 N -0.92 -52.91 13.13 21.45 0.28 -52.62 15 16 Si 0.97 41.46 29.54 68.60 2.03 43.48 15 17 H -0.26 -10.36 7.11 99.48 0.71 -9.66 15 18 H -0.28 -11.46 7.11 99.48 0.71 -10.76 15 19 H -0.28 -11.61 7.11 99.48 0.71 -10.90 15 20 H 0.07 1.11 8.14 -2.39 -0.02 1.09 15 21 H 0.11 1.07 8.14 -2.39 -0.02 1.05 15 22 H 0.07 1.09 8.14 -2.39 -0.02 1.07 15 23 H 0.10 2.25 7.20 -2.39 -0.02 2.23 15 24 H 0.10 1.93 7.09 -2.39 -0.02 1.92 15 25 H 0.11 4.28 8.14 -2.39 -0.02 4.26 15 26 H 0.10 4.04 7.66 -2.39 -0.02 4.02 15 27 H 0.27 14.50 8.31 -92.71 -0.77 13.73 15 Total: -1.00 -68.71 251.57 0.25 -68.46 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: 1.16 Total: 10.60 kcal Atomic # 6 Polarization: -60.18 SS G_CDS: 2.30 Total: -57.88 kcal Atomic # 7 Polarization: -52.91 SS G_CDS: 0.28 Total: -52.62 kcal Atomic # 8 Polarization: -107.05 SS G_CDS: -5.21 Total: -112.25 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.48 kcal Atomic # 16 Polarization: 100.52 SS G_CDS: -0.31 Total: 100.21 kcal Total: -68.71 0.25 -68.46 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584602216.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.673 kcal (2) G-P(sol) polarization free energy of solvation -68.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds