Wall clock time and date at job start Mon Mar 30 2020 02:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42905 * 113.99737 * 2 1 4 4 H 1.08993 * 108.78257 * 27.14873 * 3 2 1 5 5 C 1.54207 * 108.92477 * 268.54107 * 3 2 1 6 6 S 1.83818 * 102.86283 * 214.21314 * 5 3 2 7 7 O 1.42105 * 109.81210 * 147.96896 * 6 5 3 8 8 O 1.42097 * 109.81446 * 282.28092 * 6 5 3 9 9 C 1.83826 * 94.27841 * 35.12832 * 6 5 3 10 10 C 1.52388 * 108.92433 * 145.75533 * 3 2 1 11 11 H 1.08993 * 108.92658 * 241.35101 * 10 3 2 12 12 C 1.50703 * 108.92465 * 359.97438 * 10 3 2 13 13 H 1.08002 * 119.99794 * 359.97438 * 12 10 3 14 14 C 1.37877 * 119.99860 * 180.02562 * 12 10 3 15 15 N 1.31513 * 120.00034 * 359.97438 * 14 12 10 16 16 Si 1.86801 * 119.99907 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47104 * 89.99865 * 16 14 12 18 18 H 1.48502 * 109.46874 * 209.99941 * 16 14 12 19 19 H 1.48498 * 109.47197 * 329.99766 * 16 14 12 20 20 H 1.08998 * 109.47181 * 60.00025 * 1 2 3 21 21 H 1.08999 * 109.47164 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47448 * 300.00302 * 1 2 3 23 23 H 1.08998 * 110.72942 * 95.87260 * 5 3 2 24 24 H 1.09000 * 110.73915 * 332.55758 * 5 3 2 25 25 H 1.08991 * 110.73639 * 83.22097 * 9 6 5 26 26 H 1.08997 * 110.73240 * 206.53803 * 9 6 5 27 27 H 0.97001 * 119.99857 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3140 1.9996 0.4709 5 6 2.2475 1.7473 -1.4582 6 16 3.7896 2.7405 -1.3391 7 8 4.5407 2.6097 -2.5383 8 8 3.4938 4.0287 -0.8172 9 6 4.5282 1.6899 -0.0238 10 6 3.2998 1.2724 0.8112 11 1 3.2029 1.9529 1.6571 12 6 3.5138 -0.1255 1.3321 13 1 2.7990 -0.9022 1.1035 14 6 4.6215 -0.4125 2.1012 15 7 5.4916 0.5335 2.3799 16 14 4.8865 -2.1450 2.7474 17 1 5.6766 -2.9255 1.7618 18 1 5.6222 -2.0855 4.0360 19 1 3.5711 -2.8012 2.9584 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 1.4201 2.3606 -1.8151 24 1 2.3947 0.8821 -2.1046 25 1 5.0156 0.8161 -0.4561 26 1 5.2295 2.2647 0.5809 27 1 6.2711 0.3315 2.9207 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606262549.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:46 Heat of formation + Delta-G solvation = -109.863345 kcal Electronic energy + Delta-G solvation = -13863.575060 eV Core-core repulsion = 11328.379930 eV Total energy + Delta-G solvation = -2535.195130 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 220.060 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.07549 -36.37358 -35.35481 -34.37054 -31.87292 -28.79998 -26.61504 -25.35749 -23.44454 -19.83640 -18.26072 -17.09029 -16.19229 -15.47308 -15.40571 -15.02682 -14.58141 -14.39386 -13.95198 -13.17955 -12.68916 -12.27405 -12.13359 -11.55634 -11.41871 -11.35584 -11.01752 -10.85669 -10.75503 -10.37339 -10.31484 -9.79093 -9.61820 -9.09160 -8.79594 -8.42319 -6.13585 -4.15938 0.81069 3.17127 3.28010 3.34426 3.38349 4.27210 4.31218 4.41094 4.70360 5.12764 5.20536 5.33116 5.62894 5.68462 5.75374 5.91132 5.99223 6.16636 6.21649 6.45092 7.11351 7.34572 7.73792 7.91702 8.22144 8.96436 9.50238 10.95880 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.029280 B = 0.012819 C = 0.009840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.058787 B = 2183.659976 C = 2844.732348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.343 6.343 3 C 0.110 3.890 4 H 0.063 0.937 5 C -0.609 4.609 6 S 2.332 3.668 7 O -0.963 6.963 8 O -0.954 6.954 9 C -0.491 4.491 10 C 0.036 3.964 11 H 0.058 0.942 12 C -0.498 4.498 13 H 0.088 0.912 14 C 0.058 3.942 15 N -0.892 5.892 16 Si 0.899 3.101 17 H -0.280 1.280 18 H -0.288 1.288 19 H -0.273 1.273 20 H 0.030 0.970 21 H 0.078 0.922 22 H 0.037 0.963 23 H 0.117 0.883 24 H 0.138 0.862 25 H 0.127 0.873 26 H 0.135 0.865 27 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.391 0.510 -4.072 7.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.261 6.261 3 C 0.050 3.950 4 H 0.081 0.919 5 C -0.738 4.738 6 S 2.520 3.480 7 O -0.960 6.960 8 O -0.951 6.951 9 C -0.626 4.626 10 C 0.016 3.984 11 H 0.076 0.924 12 C -0.537 4.537 13 H 0.106 0.894 14 C -0.144 4.144 15 N -0.531 5.531 16 Si 0.727 3.273 17 H -0.207 1.207 18 H -0.214 1.214 19 H -0.198 1.198 20 H 0.048 0.952 21 H 0.097 0.903 22 H 0.056 0.944 23 H 0.135 0.865 24 H 0.156 0.844 25 H 0.146 0.854 26 H 0.153 0.847 27 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.811 1.256 -4.515 7.465 hybrid contribution -0.325 -1.329 0.667 1.522 sum -6.136 -0.073 -3.847 7.243 Atomic orbital electron populations 1.22768 0.83732 1.01921 0.99071 1.88254 1.17050 1.26541 1.94221 1.22287 0.98230 0.85186 0.89309 0.91924 1.30906 1.21352 1.15252 1.06276 1.10757 0.79776 0.78453 0.78983 1.93518 1.68170 1.88102 1.46258 1.93545 1.84326 1.36731 1.80482 1.30315 1.09134 1.11845 1.11315 1.19088 0.84630 1.01328 0.93340 0.92373 1.21116 1.07820 0.94129 1.30623 0.89378 1.25051 0.95979 0.97354 0.96024 1.69921 1.12377 1.32405 1.38387 0.86466 0.78287 0.84363 0.78142 1.20657 1.21411 1.19757 0.95154 0.90340 0.94417 0.86489 0.84356 0.85426 0.84653 0.92769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 10.80 101.05 1.09 1.42 15 2 O -0.34 -6.59 7.62 -35.23 -0.27 -6.86 15 3 C 0.11 2.05 3.07 -26.41 -0.08 1.97 15 4 H 0.06 1.06 7.71 -51.93 -0.40 0.66 15 5 C -0.61 -9.76 7.06 37.79 0.27 -9.49 15 6 S 2.33 42.57 6.07 -107.50 -0.65 41.92 15 7 O -0.96 -19.87 18.17 -57.67 -1.05 -20.92 15 8 O -0.95 -19.67 18.16 -57.67 -1.05 -20.72 15 9 C -0.49 -10.23 5.67 37.83 0.21 -10.01 15 10 C 0.04 0.81 2.61 -91.41 -0.24 0.57 15 11 H 0.06 1.37 8.14 -51.93 -0.42 0.95 15 12 C -0.50 -12.54 8.02 -34.44 -0.28 -12.82 15 13 H 0.09 2.24 5.91 -52.49 -0.31 1.93 15 14 C 0.06 1.50 5.28 -17.82 -0.09 1.41 15 15 N -0.89 -23.86 11.88 55.43 0.66 -23.20 15 16 Si 0.90 20.47 29.54 -169.99 -5.02 15.44 15 17 H -0.28 -6.37 7.11 56.52 0.40 -5.97 15 18 H -0.29 -6.58 7.11 56.52 0.40 -6.18 15 19 H -0.27 -6.15 7.11 56.52 0.40 -5.75 15 20 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 15 21 H 0.08 1.01 8.14 -51.93 -0.42 0.59 15 22 H 0.04 0.51 8.08 -51.93 -0.42 0.10 15 23 H 0.12 1.55 8.14 -51.93 -0.42 1.12 15 24 H 0.14 2.11 8.08 -51.93 -0.42 1.69 15 25 H 0.13 2.72 7.85 -51.93 -0.41 2.31 15 26 H 0.14 2.93 7.63 -51.93 -0.40 2.53 15 27 H 0.26 6.76 8.31 -40.82 -0.34 6.42 15 LS Contribution 241.41 15.07 3.64 3.64 Total: -1.00 -31.25 241.41 -6.04 -37.29 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: -3.18 Total: 0.36 kcal Atomic # 6 Polarization: -27.85 SS G_CDS: 0.88 Total: -26.96 kcal Atomic # 7 Polarization: -23.86 SS G_CDS: 0.66 Total: -23.20 kcal Atomic # 8 Polarization: -46.13 SS G_CDS: -2.36 Total: -48.49 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.44 kcal Atomic # 16 Polarization: 42.57 SS G_CDS: -0.65 Total: 41.92 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -31.25 -6.04 -37.29 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606262549.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.571 kcal (2) G-P(sol) polarization free energy of solvation -31.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds