Wall clock time and date at job start Mon Mar 30 2020 02:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42905 * 113.99737 * 2 1 4 4 H 1.08993 * 108.78257 * 27.14873 * 3 2 1 5 5 C 1.54207 * 108.92477 * 268.54107 * 3 2 1 6 6 S 1.83818 * 102.86283 * 214.21314 * 5 3 2 7 7 O 1.42105 * 109.81210 * 147.96896 * 6 5 3 8 8 O 1.42097 * 109.81446 * 282.28092 * 6 5 3 9 9 C 1.83826 * 94.27841 * 35.12832 * 6 5 3 10 10 C 1.52388 * 108.92433 * 145.75533 * 3 2 1 11 11 H 1.08993 * 108.92658 * 241.35101 * 10 3 2 12 12 C 1.50703 * 108.92465 * 359.97438 * 10 3 2 13 13 H 1.08002 * 119.99794 * 359.97438 * 12 10 3 14 14 C 1.37877 * 119.99860 * 180.02562 * 12 10 3 15 15 N 1.31513 * 120.00034 * 359.97438 * 14 12 10 16 16 Si 1.86801 * 119.99907 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47104 * 89.99865 * 16 14 12 18 18 H 1.48502 * 109.46874 * 209.99941 * 16 14 12 19 19 H 1.48498 * 109.47197 * 329.99766 * 16 14 12 20 20 H 1.08998 * 109.47181 * 60.00025 * 1 2 3 21 21 H 1.08999 * 109.47164 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47448 * 300.00302 * 1 2 3 23 23 H 1.08998 * 110.72942 * 95.87260 * 5 3 2 24 24 H 1.09000 * 110.73915 * 332.55758 * 5 3 2 25 25 H 1.08991 * 110.73639 * 83.22097 * 9 6 5 26 26 H 1.08997 * 110.73240 * 206.53803 * 9 6 5 27 27 H 0.97001 * 119.99857 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3140 1.9996 0.4709 5 6 2.2475 1.7473 -1.4582 6 16 3.7896 2.7405 -1.3391 7 8 4.5407 2.6097 -2.5383 8 8 3.4938 4.0287 -0.8172 9 6 4.5282 1.6899 -0.0238 10 6 3.2998 1.2724 0.8112 11 1 3.2029 1.9529 1.6571 12 6 3.5138 -0.1255 1.3321 13 1 2.7990 -0.9022 1.1035 14 6 4.6215 -0.4125 2.1012 15 7 5.4916 0.5335 2.3799 16 14 4.8865 -2.1450 2.7474 17 1 5.6766 -2.9255 1.7618 18 1 5.6222 -2.0855 4.0360 19 1 3.5711 -2.8012 2.9584 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 1.4201 2.3606 -1.8151 24 1 2.3947 0.8821 -2.1046 25 1 5.0156 0.8161 -0.4561 26 1 5.2295 2.2647 0.5809 27 1 6.2711 0.3315 2.9207 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606262549.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:46 Heat of formation + Delta-G solvation = -133.674730 kcal Electronic energy + Delta-G solvation = -13864.607599 eV Core-core repulsion = 11328.379930 eV Total energy + Delta-G solvation = -2536.227669 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 220.060 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.52203 -37.97684 -36.96592 -36.02062 -33.63221 -30.35796 -28.02198 -26.94402 -25.04200 -21.45790 -19.78664 -18.76927 -17.73280 -17.13461 -16.88227 -16.54832 -16.32085 -15.85790 -15.40270 -14.69418 -14.30159 -13.82881 -13.56328 -13.18318 -13.03942 -12.84536 -12.78903 -12.61403 -12.30284 -12.01389 -11.83467 -11.50314 -11.24084 -10.69408 -10.49784 -10.18760 -8.08879 -6.15632 -0.71008 1.45091 1.47883 1.56923 1.68323 2.47370 2.77652 3.00066 3.16979 3.33373 3.73723 4.02153 4.20615 4.39715 4.49271 4.59008 4.69188 4.77005 4.96233 4.97457 5.39265 5.64378 5.93696 6.21039 6.57794 7.00865 7.53321 8.99733 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.029280 B = 0.012819 C = 0.009840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.058787 B = 2183.659976 C = 2844.732348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.372 6.372 3 C 0.106 3.894 4 H 0.083 0.917 5 C -0.581 4.581 6 S 2.374 3.626 7 O -0.982 6.982 8 O -0.974 6.974 9 C -0.507 4.507 10 C 0.025 3.975 11 H 0.034 0.966 12 C -0.504 4.504 13 H 0.086 0.914 14 C 0.009 3.991 15 N -0.921 5.921 16 Si 0.952 3.048 17 H -0.279 1.279 18 H -0.291 1.291 19 H -0.268 1.268 20 H 0.056 0.944 21 H 0.092 0.908 22 H 0.043 0.957 23 H 0.161 0.839 24 H 0.154 0.846 25 H 0.116 0.884 26 H 0.115 0.885 27 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.225 0.172 -5.273 9.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.290 6.290 3 C 0.047 3.953 4 H 0.101 0.899 5 C -0.713 4.713 6 S 2.564 3.436 7 O -0.979 6.979 8 O -0.971 6.971 9 C -0.640 4.640 10 C 0.005 3.995 11 H 0.052 0.948 12 C -0.543 4.543 13 H 0.104 0.896 14 C -0.190 4.190 15 N -0.561 5.561 16 Si 0.779 3.221 17 H -0.205 1.205 18 H -0.217 1.217 19 H -0.192 1.192 20 H 0.074 0.926 21 H 0.110 0.890 22 H 0.061 0.939 23 H 0.179 0.821 24 H 0.172 0.828 25 H 0.134 0.866 26 H 0.134 0.866 27 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.626 0.914 -5.699 9.564 hybrid contribution 0.142 -1.222 1.017 1.596 sum -7.485 -0.307 -4.683 8.834 Atomic orbital electron populations 1.23033 0.81231 1.03465 1.00588 1.88184 1.19803 1.26542 1.94479 1.22169 0.96683 0.86009 0.90473 0.89908 1.30762 1.19981 1.15458 1.05064 1.09354 0.80067 0.77318 0.76899 1.93493 1.70010 1.88285 1.46158 1.93517 1.84823 1.38017 1.80730 1.30159 1.08499 1.12327 1.12993 1.19090 0.87190 0.99272 0.93928 0.94776 1.21443 1.07285 0.95534 1.30070 0.89638 1.25736 0.96199 1.00241 0.96782 1.70050 1.12828 1.33849 1.39392 0.85637 0.78155 0.80962 0.77361 1.20511 1.21679 1.19208 0.92590 0.88961 0.93865 0.82124 0.82771 0.86596 0.86641 0.93150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.33 10.80 113.37 1.22 1.56 15 2 O -0.37 -13.30 7.62 -148.98 -1.13 -14.44 15 3 C 0.11 3.71 3.07 30.80 0.09 3.81 15 4 H 0.08 2.54 7.71 -2.39 -0.02 2.53 15 5 C -0.58 -16.31 7.06 72.39 0.51 -15.80 15 6 S 2.37 82.87 6.07 -56.49 -0.34 82.53 15 7 O -0.98 -38.85 18.17 -127.53 -2.32 -41.17 15 8 O -0.97 -38.63 18.16 -127.53 -2.32 -40.95 15 9 C -0.51 -21.49 5.67 72.42 0.41 -21.08 15 10 C 0.03 1.13 2.61 -11.31 -0.03 1.10 15 11 H 0.03 1.65 8.14 -2.39 -0.02 1.64 15 12 C -0.50 -25.55 8.02 25.60 0.21 -25.35 15 13 H 0.09 4.31 5.91 -2.91 -0.02 4.29 15 14 C 0.01 0.48 5.28 84.65 0.45 0.92 15 15 N -0.92 -50.71 11.88 21.45 0.25 -50.46 15 16 Si 0.95 42.34 29.54 68.60 2.03 44.37 15 17 H -0.28 -12.24 7.11 99.48 0.71 -11.53 15 18 H -0.29 -12.93 7.11 99.48 0.71 -12.22 15 19 H -0.27 -11.54 7.11 99.48 0.71 -10.83 15 20 H 0.06 1.14 8.14 -2.39 -0.02 1.12 15 21 H 0.09 2.07 8.14 -2.39 -0.02 2.05 15 22 H 0.04 1.04 8.08 -2.39 -0.02 1.03 15 23 H 0.16 3.26 8.14 -2.39 -0.02 3.24 15 24 H 0.15 4.01 8.08 -2.39 -0.02 3.99 15 25 H 0.12 5.09 7.85 -2.39 -0.02 5.07 15 26 H 0.12 5.26 7.63 -2.39 -0.02 5.24 15 27 H 0.26 13.79 8.31 -92.71 -0.77 13.02 15 Total: -1.00 -66.51 241.41 0.20 -66.31 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: 1.16 Total: 8.63 kcal Atomic # 6 Polarization: -57.69 SS G_CDS: 2.86 Total: -54.82 kcal Atomic # 7 Polarization: -50.71 SS G_CDS: 0.25 Total: -50.46 kcal Atomic # 8 Polarization: -90.79 SS G_CDS: -5.77 Total: -96.56 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Atomic # 16 Polarization: 82.87 SS G_CDS: -0.34 Total: 82.53 kcal Total: -66.51 0.20 -66.31 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606262549.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.361 kcal (2) G-P(sol) polarization free energy of solvation -66.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds