Wall clock time and date at job start Mon Mar 30 2020 02:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42895 * 114.00204 * 2 1 4 4 H 1.09006 * 109.65198 * 29.55161 * 3 2 1 5 5 C 1.55099 * 109.54897 * 269.17451 * 3 2 1 6 6 S 1.83849 * 101.18871 * 198.34749 * 5 3 2 7 7 O 1.42102 * 109.61124 * 282.90218 * 6 5 3 8 8 O 1.42095 * 109.61331 * 148.94903 * 6 5 3 9 9 C 1.83240 * 95.31960 * 35.92568 * 6 5 3 10 10 C 1.52969 * 109.65312 * 150.00270 * 3 2 1 11 11 H 1.09000 * 108.93570 * 28.90986 * 10 3 2 12 12 C 1.50702 * 108.82500 * 270.30794 * 10 3 2 13 13 H 1.08006 * 119.99816 * 355.85006 * 12 10 3 14 14 C 1.37870 * 120.00079 * 175.85137 * 12 10 3 15 15 N 1.31517 * 120.00354 * 0.02562 * 14 12 10 16 16 Si 1.86801 * 119.99900 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.47172 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47229 * 119.99908 * 16 14 12 19 19 H 1.48501 * 109.47093 * 239.99767 * 16 14 12 20 20 H 1.08996 * 109.47356 * 180.02562 * 1 2 3 21 21 H 1.09006 * 109.46903 * 300.00229 * 1 2 3 22 22 H 1.08999 * 109.46954 * 59.99552 * 1 2 3 23 23 H 1.09001 * 111.08004 * 80.36696 * 5 3 2 24 24 H 1.08995 * 111.07741 * 316.32477 * 5 3 2 25 25 H 1.09005 * 110.26750 * 98.66765 * 9 6 5 26 26 H 1.08995 * 110.26740 * 220.72575 * 9 6 5 27 27 H 0.96998 * 120.00392 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3436 2.0035 0.5063 5 6 2.2406 1.7709 -1.4614 6 16 3.4608 3.1241 -1.2166 7 8 2.7958 4.2854 -0.7386 8 8 4.3167 3.2051 -2.3480 9 6 4.3443 2.3082 0.1659 10 6 3.3593 1.2679 0.7202 11 1 3.7933 0.2745 0.6069 12 6 3.1358 1.5385 2.1858 13 1 2.1470 1.7831 2.5451 14 6 4.1934 1.4739 3.0679 15 7 5.3975 1.1766 2.6303 16 14 3.9164 1.8101 4.8844 17 1 2.4832 2.1210 5.1173 18 1 4.2980 0.6114 5.6735 19 1 4.7480 2.9658 5.3064 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 1.3184 2.1496 -1.9022 24 1 2.6617 0.9682 -2.0668 25 1 5.2462 1.8172 -0.1998 26 1 4.5963 3.0375 0.9357 27 1 6.1415 1.1308 3.2510 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606262550.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:48 Heat of formation + Delta-G solvation = -117.506131 kcal Electronic energy + Delta-G solvation = -13791.854473 eV Core-core repulsion = 11256.327927 eV Total energy + Delta-G solvation = -2535.526546 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 220.060 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.02644 -36.39193 -35.38602 -34.62374 -31.95457 -28.81796 -26.58726 -25.68708 -23.09712 -20.07576 -18.29582 -16.93946 -16.51784 -15.75757 -15.41495 -14.90784 -14.55613 -14.42403 -13.90138 -13.13156 -12.95288 -12.25021 -12.12531 -11.59205 -11.43195 -11.37503 -11.11499 -10.98176 -10.74993 -10.56620 -10.38659 -9.86883 -9.58095 -9.24975 -8.96965 -8.52408 -6.22761 -4.29421 0.76831 3.15301 3.22663 3.29956 3.33368 4.21099 4.23236 4.34196 4.67579 5.06758 5.13683 5.32014 5.58574 5.71139 5.74421 5.92548 5.94982 6.14770 6.20904 6.32195 7.17443 7.23985 7.69748 7.80506 8.03581 8.73210 9.36723 10.85892 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.026859 B = 0.012849 C = 0.009903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.240021 B = 2178.699390 C = 2826.624069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.362 6.362 3 C 0.105 3.895 4 H 0.078 0.922 5 C -0.618 4.618 6 S 2.348 3.652 7 O -0.949 6.949 8 O -0.963 6.963 9 C -0.506 4.506 10 C 0.048 3.952 11 H 0.066 0.934 12 C -0.518 4.518 13 H 0.064 0.936 14 C 0.064 3.936 15 N -0.882 5.882 16 Si 0.897 3.103 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.282 1.282 20 H 0.080 0.920 21 H 0.042 0.958 22 H 0.033 0.967 23 H 0.119 0.881 24 H 0.136 0.864 25 H 0.122 0.878 26 H 0.137 0.863 27 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.755 -0.447 -4.586 7.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.280 6.280 3 C 0.046 3.954 4 H 0.096 0.904 5 C -0.747 4.747 6 S 2.536 3.464 7 O -0.946 6.946 8 O -0.960 6.960 9 C -0.641 4.641 10 C 0.028 3.972 11 H 0.084 0.916 12 C -0.556 4.556 13 H 0.082 0.918 14 C -0.139 4.139 15 N -0.519 5.519 16 Si 0.724 3.276 17 H -0.195 1.195 18 H -0.208 1.208 19 H -0.208 1.208 20 H 0.098 0.902 21 H 0.061 0.939 22 H 0.052 0.948 23 H 0.137 0.863 24 H 0.154 0.846 25 H 0.141 0.859 26 H 0.156 0.844 27 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.335 0.269 -5.038 7.342 hybrid contribution -0.409 -0.405 1.278 1.402 sum -5.744 -0.136 -3.759 6.866 Atomic orbital electron populations 1.22750 0.82379 1.02054 0.99617 1.87952 1.18499 1.27166 1.94418 1.22873 0.98527 0.85527 0.88516 0.90421 1.31140 1.17114 1.19772 1.06678 1.10158 0.78930 0.78239 0.79106 1.93557 1.74886 1.44761 1.81395 1.93525 1.64519 1.87406 1.50577 1.30234 1.09736 1.11014 1.13123 1.18793 0.86424 0.96505 0.95521 0.91597 1.21120 0.95232 1.48743 0.90489 0.91758 1.24993 0.95119 0.94546 0.99289 1.69959 0.99693 1.47063 1.35181 0.86445 0.78594 0.78000 0.84534 1.19519 1.20820 1.20770 0.90168 0.93917 0.94793 0.86298 0.84605 0.85918 0.84447 0.92576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.84 101.05 1.09 1.51 15 2 O -0.36 -6.87 10.31 -35.23 -0.36 -7.24 15 3 C 0.11 2.02 2.44 -25.64 -0.06 1.95 15 4 H 0.08 1.46 7.29 -51.93 -0.38 1.08 15 5 C -0.62 -9.93 7.12 38.27 0.27 -9.66 15 6 S 2.35 42.96 6.05 -107.50 -0.65 42.31 15 7 O -0.95 -19.91 18.16 -57.67 -1.05 -20.95 15 8 O -0.96 -19.54 18.16 -57.67 -1.05 -20.59 15 9 C -0.51 -10.47 5.92 37.48 0.22 -10.25 15 10 C 0.05 1.07 2.29 -91.47 -0.21 0.86 15 11 H 0.07 1.61 8.04 -51.93 -0.42 1.20 15 12 C -0.52 -13.09 8.21 -34.44 -0.28 -13.38 15 13 H 0.06 1.60 7.50 -52.48 -0.39 1.21 15 14 C 0.06 1.66 5.06 -17.82 -0.09 1.57 15 15 N -0.88 -23.52 12.35 55.43 0.68 -22.83 15 16 Si 0.90 20.23 29.54 -169.99 -5.02 15.21 15 17 H -0.27 -6.03 7.11 56.52 0.40 -5.62 15 18 H -0.28 -6.37 7.11 56.52 0.40 -5.96 15 19 H -0.28 -6.33 7.11 56.52 0.40 -5.93 15 20 H 0.08 0.98 8.14 -51.93 -0.42 0.56 15 21 H 0.04 0.60 8.09 -51.93 -0.42 0.18 15 22 H 0.03 0.42 8.14 -51.93 -0.42 0.00 15 23 H 0.12 1.61 8.14 -51.93 -0.42 1.19 15 24 H 0.14 2.00 8.14 -51.93 -0.42 1.58 15 25 H 0.12 2.44 8.14 -51.93 -0.42 2.02 15 26 H 0.14 3.06 7.24 -51.93 -0.38 2.68 15 27 H 0.26 6.73 8.31 -40.82 -0.34 6.39 15 LS Contribution 244.92 15.07 3.69 3.69 Total: -1.00 -31.18 244.92 -6.04 -37.23 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: -3.23 Total: 0.56 kcal Atomic # 6 Polarization: -28.33 SS G_CDS: 0.94 Total: -27.38 kcal Atomic # 7 Polarization: -23.52 SS G_CDS: 0.68 Total: -22.83 kcal Atomic # 8 Polarization: -46.33 SS G_CDS: -2.46 Total: -48.78 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Atomic # 16 Polarization: 42.96 SS G_CDS: -0.65 Total: 42.31 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -31.18 -6.04 -37.23 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606262550.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.280 kcal (2) G-P(sol) polarization free energy of solvation -31.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds