Wall clock time and date at job start Mon Mar 30 2020 02:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42895 * 114.00204 * 2 1 4 4 H 1.09006 * 109.65198 * 29.55161 * 3 2 1 5 5 C 1.55099 * 109.54897 * 269.17451 * 3 2 1 6 6 S 1.83849 * 101.18871 * 198.34749 * 5 3 2 7 7 O 1.42102 * 109.61124 * 282.90218 * 6 5 3 8 8 O 1.42095 * 109.61331 * 148.94903 * 6 5 3 9 9 C 1.83240 * 95.31960 * 35.92568 * 6 5 3 10 10 C 1.52969 * 109.65312 * 150.00270 * 3 2 1 11 11 H 1.09000 * 108.93570 * 28.90986 * 10 3 2 12 12 C 1.50702 * 108.82500 * 270.30794 * 10 3 2 13 13 H 1.08006 * 119.99816 * 355.85006 * 12 10 3 14 14 C 1.37870 * 120.00079 * 175.85137 * 12 10 3 15 15 N 1.31517 * 120.00354 * 0.02562 * 14 12 10 16 16 Si 1.86801 * 119.99900 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.47172 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47229 * 119.99908 * 16 14 12 19 19 H 1.48501 * 109.47093 * 239.99767 * 16 14 12 20 20 H 1.08996 * 109.47356 * 180.02562 * 1 2 3 21 21 H 1.09006 * 109.46903 * 300.00229 * 1 2 3 22 22 H 1.08999 * 109.46954 * 59.99552 * 1 2 3 23 23 H 1.09001 * 111.08004 * 80.36696 * 5 3 2 24 24 H 1.08995 * 111.07741 * 316.32477 * 5 3 2 25 25 H 1.09005 * 110.26750 * 98.66765 * 9 6 5 26 26 H 1.08995 * 110.26740 * 220.72575 * 9 6 5 27 27 H 0.96998 * 120.00392 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3436 2.0035 0.5063 5 6 2.2406 1.7709 -1.4614 6 16 3.4608 3.1241 -1.2166 7 8 2.7958 4.2854 -0.7386 8 8 4.3167 3.2051 -2.3480 9 6 4.3443 2.3082 0.1659 10 6 3.3593 1.2679 0.7202 11 1 3.7933 0.2745 0.6069 12 6 3.1358 1.5385 2.1858 13 1 2.1470 1.7831 2.5451 14 6 4.1934 1.4739 3.0679 15 7 5.3975 1.1766 2.6303 16 14 3.9164 1.8101 4.8844 17 1 2.4832 2.1210 5.1173 18 1 4.2980 0.6114 5.6735 19 1 4.7480 2.9658 5.3064 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 1.3184 2.1496 -1.9022 24 1 2.6617 0.9682 -2.0668 25 1 5.2462 1.8172 -0.1998 26 1 4.5963 3.0375 0.9357 27 1 6.1415 1.1308 3.2510 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606262550.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:47 Heat of formation + Delta-G solvation = -141.635896 kcal Electronic energy + Delta-G solvation = -13792.900819 eV Core-core repulsion = 11256.327927 eV Total energy + Delta-G solvation = -2536.572891 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 220.060 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.48509 -37.99088 -36.99336 -36.28631 -33.73582 -30.38019 -27.96716 -27.31265 -24.71789 -21.70224 -19.83273 -18.68749 -18.05261 -17.38449 -16.91135 -16.42617 -16.34377 -15.79691 -15.31127 -14.83380 -14.34718 -13.89710 -13.64014 -13.21532 -13.05424 -12.96480 -12.84829 -12.56882 -12.45163 -12.14528 -11.92772 -11.47535 -11.23225 -11.04982 -10.49769 -10.36178 -8.18682 -6.30130 -0.75149 1.40614 1.44422 1.54170 1.67058 2.40013 2.72982 2.90185 3.11771 3.25682 3.65827 3.96733 4.26610 4.35313 4.50236 4.51419 4.63531 4.74248 4.87758 4.91078 5.45983 5.52981 5.74440 6.14970 6.38805 6.78916 7.38431 8.89716 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.026859 B = 0.012849 C = 0.009903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.240021 B = 2178.699390 C = 2826.624069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.386 6.386 3 C 0.104 3.896 4 H 0.081 0.919 5 C -0.590 4.590 6 S 2.388 3.612 7 O -0.972 6.972 8 O -0.978 6.978 9 C -0.520 4.520 10 C 0.042 3.958 11 H 0.037 0.963 12 C -0.532 4.532 13 H 0.063 0.937 14 C 0.016 3.984 15 N -0.910 5.910 16 Si 0.950 3.050 17 H -0.264 1.264 18 H -0.281 1.281 19 H -0.281 1.281 20 H 0.101 0.899 21 H 0.042 0.958 22 H 0.059 0.941 23 H 0.159 0.841 24 H 0.157 0.843 25 H 0.120 0.880 26 H 0.114 0.886 27 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.414 -0.473 -5.443 9.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.305 6.305 3 C 0.044 3.956 4 H 0.099 0.901 5 C -0.721 4.721 6 S 2.576 3.424 7 O -0.969 6.969 8 O -0.975 6.975 9 C -0.652 4.652 10 C 0.022 3.978 11 H 0.055 0.945 12 C -0.570 4.570 13 H 0.081 0.919 14 C -0.184 4.184 15 N -0.548 5.548 16 Si 0.776 3.224 17 H -0.189 1.189 18 H -0.207 1.207 19 H -0.206 1.206 20 H 0.119 0.881 21 H 0.061 0.939 22 H 0.077 0.923 23 H 0.177 0.823 24 H 0.175 0.825 25 H 0.139 0.861 26 H 0.133 0.867 27 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.981 0.256 -5.873 9.127 hybrid contribution 0.034 -0.456 1.503 1.571 sum -6.947 -0.200 -4.371 8.210 Atomic orbital electron populations 1.23056 0.79940 1.03956 1.00857 1.87920 1.21180 1.26734 1.94664 1.22671 0.96665 0.86199 0.90032 0.90106 1.30992 1.17527 1.18335 1.05270 1.08891 0.78443 0.77895 0.77167 1.93524 1.75087 1.46632 1.81683 1.93504 1.65917 1.87877 1.50237 1.30102 1.09980 1.10571 1.14592 1.18760 0.88647 0.95350 0.95085 0.94515 1.21508 0.95062 1.48044 0.92395 0.91915 1.25699 0.95090 0.94770 1.02867 1.70061 1.00256 1.48337 1.36180 0.85607 0.78660 0.77704 0.80406 1.18851 1.20730 1.20643 0.88098 0.93936 0.92259 0.82286 0.82509 0.86129 0.86738 0.92701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 10.84 113.37 1.23 1.69 15 2 O -0.39 -13.83 10.31 -148.98 -1.54 -15.37 15 3 C 0.10 3.79 2.44 31.30 0.08 3.87 15 4 H 0.08 2.88 7.29 -2.38 -0.02 2.86 15 5 C -0.59 -16.82 7.12 72.70 0.52 -16.30 15 6 S 2.39 83.55 6.05 -56.49 -0.34 83.21 15 7 O -0.97 -39.26 18.16 -127.52 -2.32 -41.58 15 8 O -0.98 -37.93 18.16 -127.52 -2.32 -40.25 15 9 C -0.52 -21.84 5.92 72.19 0.43 -21.41 15 10 C 0.04 1.88 2.29 -11.34 -0.03 1.86 15 11 H 0.04 1.85 8.04 -2.39 -0.02 1.83 15 12 C -0.53 -27.22 8.21 25.60 0.21 -27.01 15 13 H 0.06 3.13 7.50 -2.91 -0.02 3.11 15 14 C 0.02 0.85 5.06 84.65 0.43 1.28 15 15 N -0.91 -49.79 12.35 21.44 0.26 -49.52 15 16 Si 0.95 41.80 29.54 68.60 2.03 43.83 15 17 H -0.26 -11.23 7.11 99.48 0.71 -10.52 15 18 H -0.28 -12.24 7.11 99.48 0.71 -11.53 15 19 H -0.28 -12.19 7.11 99.48 0.71 -11.48 15 20 H 0.10 2.15 8.14 -2.39 -0.02 2.13 15 21 H 0.04 1.08 8.09 -2.38 -0.02 1.06 15 22 H 0.06 1.22 8.14 -2.39 -0.02 1.21 15 23 H 0.16 3.40 8.14 -2.39 -0.02 3.38 15 24 H 0.16 3.96 8.14 -2.39 -0.02 3.94 15 25 H 0.12 4.97 8.14 -2.38 -0.02 4.95 15 26 H 0.11 5.30 7.24 -2.39 -0.02 5.28 15 27 H 0.26 13.77 8.31 -92.71 -0.77 13.00 15 Total: -1.00 -66.28 244.92 -0.20 -66.48 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: 1.16 Total: 9.23 kcal Atomic # 6 Polarization: -58.89 SS G_CDS: 2.86 Total: -56.03 kcal Atomic # 7 Polarization: -49.79 SS G_CDS: 0.26 Total: -49.52 kcal Atomic # 8 Polarization: -91.03 SS G_CDS: -6.17 Total: -97.19 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.83 kcal Atomic # 16 Polarization: 83.55 SS G_CDS: -0.34 Total: 83.21 kcal Total: -66.28 -0.20 -66.48 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606262550.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.156 kcal (2) G-P(sol) polarization free energy of solvation -66.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds