Wall clock time and date at job start Mon Mar 30 2020 02:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 113.99967 * 2 1 4 4 H 1.09002 * 108.89273 * 330.69866 * 3 2 1 5 5 C 1.54206 * 108.92608 * 89.36852 * 3 2 1 6 6 S 1.83825 * 102.86185 * 145.65352 * 5 3 2 7 7 O 1.42093 * 109.81208 * 77.68132 * 6 5 3 8 8 O 1.42096 * 109.81031 * 211.99955 * 6 5 3 9 9 C 1.83828 * 94.23346 * 324.85752 * 6 5 3 10 10 C 1.52385 * 108.81564 * 212.09055 * 3 2 1 11 11 H 1.08995 * 108.92323 * 118.58669 * 10 3 2 12 12 C 1.50697 * 108.92633 * 0.07127 * 10 3 2 13 13 H 1.08003 * 120.00087 * 0.02562 * 12 10 3 14 14 C 1.37871 * 119.99795 * 179.97438 * 12 10 3 15 15 N 1.31521 * 120.00187 * 0.02562 * 14 12 10 16 16 Si 1.86801 * 119.99828 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47315 * 60.00527 * 16 14 12 18 18 H 1.48503 * 109.47033 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.47268 * 300.00073 * 16 14 12 20 20 H 1.08998 * 109.47422 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.46948 * 300.00424 * 1 2 3 22 22 H 1.08997 * 109.46939 * 60.00173 * 1 2 3 23 23 H 1.09006 * 110.73622 * 263.99262 * 5 3 2 24 24 H 1.08994 * 110.73959 * 27.13056 * 5 3 2 25 25 H 1.08998 * 110.73436 * 153.48052 * 9 6 5 26 26 H 1.08993 * 110.73557 * 276.61639 * 9 6 5 27 27 H 0.96997 * 119.99651 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3322 1.9937 -0.5047 5 6 2.1990 1.7689 1.4586 6 16 3.7468 2.7572 1.3769 7 8 3.4722 4.0375 0.8250 8 8 4.4559 2.6438 2.6031 9 6 4.5260 1.6841 0.1039 10 6 3.3265 1.2574 -0.7663 11 1 3.2592 1.9234 -1.6265 12 6 3.5549 -0.1487 -1.2578 13 1 2.8310 -0.9206 -1.0417 14 6 4.6874 -0.4495 -1.9844 15 7 5.5686 0.4905 -2.2480 16 14 4.9701 -2.1924 -2.5943 17 1 3.8538 -2.5911 -3.4887 18 1 6.2510 -2.2530 -3.3434 19 1 5.0308 -3.1188 -1.4352 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 1.3615 2.3893 1.7779 24 1 2.3189 0.9133 2.1230 25 1 5.2493 2.2474 -0.4856 26 1 4.9984 0.8175 0.5663 27 1 6.3655 0.2787 -2.7588 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606262551.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:49 Heat of formation + Delta-G solvation = -109.854556 kcal Electronic energy + Delta-G solvation = -13864.345958 eV Core-core repulsion = 11329.151209 eV Total energy + Delta-G solvation = -2535.194749 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 220.060 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.07958 -36.37589 -35.35668 -34.37326 -31.86743 -28.79611 -26.63288 -25.35024 -23.43710 -19.83348 -18.26261 -17.09286 -16.19394 -15.46796 -15.41127 -15.02676 -14.58268 -14.39795 -13.95116 -13.18492 -12.68253 -12.27304 -12.13304 -11.55754 -11.41922 -11.35202 -10.99035 -10.88531 -10.73949 -10.38401 -10.32343 -9.79166 -9.61776 -9.09136 -8.79853 -8.42366 -6.13257 -4.15710 0.81141 3.17077 3.29854 3.33960 3.36978 4.27194 4.31610 4.41319 4.69901 5.12923 5.20694 5.32974 5.63114 5.68751 5.74807 5.90982 5.99008 6.16605 6.21306 6.45333 7.11253 7.35009 7.73683 7.92039 8.22323 8.96202 9.50417 10.96178 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.029293 B = 0.012820 C = 0.009840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.631264 B = 2183.627930 C = 2844.738995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.342 6.342 3 C 0.110 3.890 4 H 0.063 0.937 5 C -0.610 4.610 6 S 2.332 3.668 7 O -0.954 6.954 8 O -0.963 6.963 9 C -0.491 4.491 10 C 0.037 3.963 11 H 0.059 0.941 12 C -0.499 4.499 13 H 0.088 0.912 14 C 0.058 3.942 15 N -0.893 5.893 16 Si 0.900 3.100 17 H -0.277 1.277 18 H -0.289 1.289 19 H -0.276 1.276 20 H 0.078 0.922 21 H 0.030 0.970 22 H 0.037 0.963 23 H 0.116 0.884 24 H 0.138 0.862 25 H 0.135 0.865 26 H 0.127 0.873 27 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.490 0.586 3.895 7.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.260 6.260 3 C 0.050 3.950 4 H 0.081 0.919 5 C -0.739 4.739 6 S 2.521 3.479 7 O -0.951 6.951 8 O -0.960 6.960 9 C -0.626 4.626 10 C 0.017 3.983 11 H 0.077 0.923 12 C -0.537 4.537 13 H 0.106 0.894 14 C -0.144 4.144 15 N -0.531 5.531 16 Si 0.728 3.272 17 H -0.202 1.202 18 H -0.215 1.215 19 H -0.201 1.201 20 H 0.097 0.903 21 H 0.049 0.951 22 H 0.055 0.945 23 H 0.135 0.865 24 H 0.156 0.844 25 H 0.154 0.846 26 H 0.146 0.854 27 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.916 1.339 4.342 7.459 hybrid contribution -0.329 -1.345 -0.650 1.529 sum -6.245 -0.005 3.692 7.255 Atomic orbital electron populations 1.22768 0.83808 1.01916 0.99075 1.88271 1.16988 1.26515 1.94226 1.22290 0.98274 0.85111 0.89336 0.91932 1.30924 1.21399 1.15165 1.06406 1.10740 0.79989 0.78537 0.78652 1.93545 1.84560 1.37338 1.79635 1.93516 1.69984 1.88202 1.44347 1.30297 1.09293 1.11888 1.11117 1.19055 0.84498 1.01311 0.93433 0.92340 1.21067 1.06119 0.93752 1.32807 0.89435 1.25046 0.96018 0.97414 0.95901 1.69913 1.11006 1.32608 1.39594 0.86522 0.77249 0.84504 0.78925 1.20231 1.21483 1.20148 0.90337 0.95133 0.94455 0.86510 0.84362 0.84649 0.85423 0.92706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.79 101.05 1.09 1.40 15 2 O -0.34 -6.58 7.61 -35.23 -0.27 -6.84 15 3 C 0.11 2.05 3.07 -26.41 -0.08 1.97 15 4 H 0.06 1.06 7.74 -51.93 -0.40 0.66 15 5 C -0.61 -9.78 7.03 37.79 0.27 -9.51 15 6 S 2.33 42.57 6.08 -107.50 -0.65 41.91 15 7 O -0.95 -19.66 18.16 -57.67 -1.05 -20.71 15 8 O -0.96 -19.86 18.17 -57.67 -1.05 -20.91 15 9 C -0.49 -10.22 5.66 37.79 0.21 -10.00 15 10 C 0.04 0.83 2.61 -91.46 -0.24 0.59 15 11 H 0.06 1.38 8.14 -51.93 -0.42 0.95 15 12 C -0.50 -12.56 8.02 -34.44 -0.28 -12.84 15 13 H 0.09 2.22 5.90 -52.48 -0.31 1.91 15 14 C 0.06 1.51 5.28 -17.82 -0.09 1.42 15 15 N -0.89 -23.87 11.88 55.43 0.66 -23.21 15 16 Si 0.90 20.48 29.54 -169.99 -5.02 15.46 15 17 H -0.28 -6.26 7.11 56.52 0.40 -5.86 15 18 H -0.29 -6.59 7.11 56.52 0.40 -6.19 15 19 H -0.28 -6.25 7.11 56.52 0.40 -5.85 15 20 H 0.08 1.01 8.14 -51.93 -0.42 0.58 15 21 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 15 22 H 0.04 0.51 8.07 -51.93 -0.42 0.09 15 23 H 0.12 1.54 8.14 -51.93 -0.42 1.12 15 24 H 0.14 2.11 8.08 -51.93 -0.42 1.69 15 25 H 0.14 2.93 7.63 -51.93 -0.40 2.53 15 26 H 0.13 2.72 7.86 -51.93 -0.41 2.31 15 27 H 0.26 6.80 8.31 -40.82 -0.34 6.46 15 LS Contribution 241.37 15.07 3.64 3.64 Total: -1.00 -31.22 241.37 -6.04 -37.26 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: -3.18 Total: 0.37 kcal Atomic # 6 Polarization: -27.86 SS G_CDS: 0.88 Total: -26.98 kcal Atomic # 7 Polarization: -23.87 SS G_CDS: 0.66 Total: -23.21 kcal Atomic # 8 Polarization: -46.10 SS G_CDS: -2.36 Total: -48.46 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Atomic # 16 Polarization: 42.57 SS G_CDS: -0.65 Total: 41.91 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -31.22 -6.04 -37.26 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606262551.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.591 kcal (2) G-P(sol) polarization free energy of solvation -31.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds