Wall clock time and date at job start Mon Mar 30 2020 02:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 113.99967 * 2 1 4 4 H 1.09002 * 108.89273 * 330.69866 * 3 2 1 5 5 C 1.54206 * 108.92608 * 89.36852 * 3 2 1 6 6 S 1.83825 * 102.86185 * 145.65352 * 5 3 2 7 7 O 1.42093 * 109.81208 * 77.68132 * 6 5 3 8 8 O 1.42096 * 109.81031 * 211.99955 * 6 5 3 9 9 C 1.83828 * 94.23346 * 324.85752 * 6 5 3 10 10 C 1.52385 * 108.81564 * 212.09055 * 3 2 1 11 11 H 1.08995 * 108.92323 * 118.58669 * 10 3 2 12 12 C 1.50697 * 108.92633 * 0.07127 * 10 3 2 13 13 H 1.08003 * 120.00087 * 0.02562 * 12 10 3 14 14 C 1.37871 * 119.99795 * 179.97438 * 12 10 3 15 15 N 1.31521 * 120.00187 * 0.02562 * 14 12 10 16 16 Si 1.86801 * 119.99828 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47315 * 60.00527 * 16 14 12 18 18 H 1.48503 * 109.47033 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.47268 * 300.00073 * 16 14 12 20 20 H 1.08998 * 109.47422 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.46948 * 300.00424 * 1 2 3 22 22 H 1.08997 * 109.46939 * 60.00173 * 1 2 3 23 23 H 1.09006 * 110.73622 * 263.99262 * 5 3 2 24 24 H 1.08994 * 110.73959 * 27.13056 * 5 3 2 25 25 H 1.08998 * 110.73436 * 153.48052 * 9 6 5 26 26 H 1.08993 * 110.73557 * 276.61639 * 9 6 5 27 27 H 0.96997 * 119.99651 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3322 1.9937 -0.5047 5 6 2.1990 1.7689 1.4586 6 16 3.7468 2.7572 1.3769 7 8 3.4722 4.0375 0.8250 8 8 4.4559 2.6438 2.6031 9 6 4.5260 1.6841 0.1039 10 6 3.3265 1.2574 -0.7663 11 1 3.2592 1.9234 -1.6265 12 6 3.5549 -0.1487 -1.2578 13 1 2.8310 -0.9206 -1.0417 14 6 4.6874 -0.4495 -1.9844 15 7 5.5686 0.4905 -2.2480 16 14 4.9701 -2.1924 -2.5943 17 1 3.8538 -2.5911 -3.4887 18 1 6.2510 -2.2530 -3.3434 19 1 5.0308 -3.1188 -1.4352 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 1.3615 2.3893 1.7779 24 1 2.3189 0.9133 2.1230 25 1 5.2493 2.2474 -0.4856 26 1 4.9984 0.8175 0.5663 27 1 6.3655 0.2787 -2.7588 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606262551.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:49 Heat of formation + Delta-G solvation = -133.637067 kcal Electronic energy + Delta-G solvation = -13865.377245 eV Core-core repulsion = 11329.151209 eV Total energy + Delta-G solvation = -2536.226036 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 220.060 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.52541 -37.97860 -36.96728 -36.02298 -33.62713 -30.35335 -28.03551 -26.93936 -25.03233 -21.45479 -19.78800 -18.76967 -17.73385 -17.12948 -16.88700 -16.54759 -16.32385 -15.86193 -15.40042 -14.69072 -14.29660 -13.82764 -13.56311 -13.18409 -13.03982 -12.81876 -12.77149 -12.64782 -12.29632 -12.03434 -11.83121 -11.49828 -11.24373 -10.68511 -10.49330 -10.19777 -8.08577 -6.15413 -0.70911 1.46919 1.48002 1.55158 1.68309 2.47527 2.77778 3.00540 3.16981 3.33280 3.73701 4.02111 4.21057 4.39661 4.48898 4.59284 4.69219 4.76975 4.96372 4.97575 5.39232 5.64739 5.93825 6.21165 6.57969 7.00727 7.53515 8.99844 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.029293 B = 0.012820 C = 0.009840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.631264 B = 2183.627930 C = 2844.738995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.371 6.371 3 C 0.106 3.894 4 H 0.083 0.917 5 C -0.582 4.582 6 S 2.374 3.626 7 O -0.974 6.974 8 O -0.982 6.982 9 C -0.506 4.506 10 C 0.026 3.974 11 H 0.034 0.966 12 C -0.505 4.505 13 H 0.086 0.914 14 C 0.009 3.991 15 N -0.921 5.921 16 Si 0.952 3.048 17 H -0.273 1.273 18 H -0.292 1.292 19 H -0.273 1.273 20 H 0.092 0.908 21 H 0.055 0.945 22 H 0.043 0.957 23 H 0.161 0.839 24 H 0.154 0.846 25 H 0.115 0.885 26 H 0.116 0.884 27 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.364 0.263 5.043 9.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.290 6.290 3 C 0.047 3.953 4 H 0.101 0.899 5 C -0.714 4.714 6 S 2.564 3.436 7 O -0.971 6.971 8 O -0.979 6.979 9 C -0.640 4.640 10 C 0.006 3.994 11 H 0.052 0.948 12 C -0.544 4.544 13 H 0.103 0.897 14 C -0.189 4.189 15 N -0.561 5.561 16 Si 0.779 3.221 17 H -0.198 1.198 18 H -0.218 1.218 19 H -0.198 1.198 20 H 0.110 0.890 21 H 0.074 0.926 22 H 0.062 0.938 23 H 0.179 0.821 24 H 0.172 0.828 25 H 0.134 0.866 26 H 0.134 0.866 27 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.771 1.011 5.474 9.559 hybrid contribution 0.148 -1.241 -0.985 1.592 sum -7.623 -0.230 4.489 8.850 Atomic orbital electron populations 1.23035 0.81276 1.03471 1.00604 1.88200 1.19768 1.26514 1.94495 1.22170 0.96598 0.85927 0.90626 0.89937 1.30779 1.20074 1.15377 1.05158 1.09339 0.80267 0.77373 0.76617 1.93517 1.85067 1.38587 1.79912 1.93491 1.71754 1.88375 1.44320 1.30142 1.08735 1.12451 1.12624 1.19057 0.87155 0.99270 0.93912 0.94759 1.21405 1.05634 0.95207 1.32189 0.89652 1.25733 0.96237 1.00348 0.96613 1.70045 1.11384 1.34036 1.40652 0.85695 0.76914 0.81065 0.78435 1.19818 1.21757 1.19780 0.88951 0.92614 0.93830 0.82143 0.82771 0.86639 0.86584 0.93136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.32 10.79 113.37 1.22 1.54 15 2 O -0.37 -13.30 7.61 -148.98 -1.13 -14.43 15 3 C 0.11 3.72 3.07 30.80 0.09 3.82 15 4 H 0.08 2.54 7.74 -2.39 -0.02 2.52 15 5 C -0.58 -16.34 7.03 72.39 0.51 -15.83 15 6 S 2.37 82.87 6.08 -56.49 -0.34 82.52 15 7 O -0.97 -38.63 18.16 -127.53 -2.32 -40.95 15 8 O -0.98 -38.83 18.17 -127.53 -2.32 -41.14 15 9 C -0.51 -21.47 5.66 72.39 0.41 -21.06 15 10 C 0.03 1.17 2.61 -11.34 -0.03 1.14 15 11 H 0.03 1.66 8.14 -2.39 -0.02 1.65 15 12 C -0.51 -25.62 8.02 25.60 0.21 -25.42 15 13 H 0.09 4.30 5.90 -2.91 -0.02 4.28 15 14 C 0.01 0.49 5.28 84.65 0.45 0.94 15 15 N -0.92 -50.73 11.88 21.45 0.25 -50.48 15 16 Si 0.95 42.35 29.54 68.60 2.03 44.37 15 17 H -0.27 -11.84 7.11 99.48 0.71 -11.13 15 18 H -0.29 -12.97 7.11 99.48 0.71 -12.26 15 19 H -0.27 -11.85 7.11 99.48 0.71 -11.14 15 20 H 0.09 2.06 8.14 -2.39 -0.02 2.04 15 21 H 0.06 1.14 8.14 -2.39 -0.02 1.12 15 22 H 0.04 1.04 8.07 -2.39 -0.02 1.02 15 23 H 0.16 3.25 8.14 -2.38 -0.02 3.23 15 24 H 0.15 4.01 8.08 -2.39 -0.02 3.99 15 25 H 0.12 5.26 7.63 -2.39 -0.02 5.24 15 26 H 0.12 5.09 7.86 -2.39 -0.02 5.07 15 27 H 0.26 13.84 8.31 -92.71 -0.77 13.07 15 Total: -1.00 -66.46 241.37 0.19 -66.26 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: 1.16 Total: 8.70 kcal Atomic # 6 Polarization: -57.73 SS G_CDS: 2.86 Total: -54.87 kcal Atomic # 7 Polarization: -50.73 SS G_CDS: 0.25 Total: -50.48 kcal Atomic # 8 Polarization: -90.75 SS G_CDS: -5.77 Total: -96.52 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.37 kcal Atomic # 16 Polarization: 82.87 SS G_CDS: -0.34 Total: 82.52 kcal Total: -66.46 0.19 -66.26 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606262551.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.372 kcal (2) G-P(sol) polarization free energy of solvation -66.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds