Wall clock time and date at job start Mon Mar 30 2020 02:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99669 * 2 1 4 4 H 1.48508 * 109.47141 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47162 * 299.99685 * 3 2 1 6 6 H 1.48501 * 109.47494 * 59.99663 * 3 2 1 7 7 C 1.37874 * 119.99835 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99766 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.47247 * 59.99949 * 9 7 2 11 11 O 1.42895 * 109.47158 * 299.99496 * 9 7 2 12 12 C 1.53006 * 109.46866 * 179.97438 * 9 7 2 13 13 H 1.09006 * 110.75981 * 56.50305 * 12 9 7 14 14 N 1.47301 * 110.85392 * 179.97438 * 12 9 7 15 15 C 1.38019 * 114.48794 * 118.17857 * 14 12 9 16 16 C 1.31692 * 121.13595 * 0.02562 * 15 14 12 17 17 Cl 1.73597 * 126.87018 * 179.97438 * 16 15 14 18 18 S 1.77674 * 106.26000 * 359.96928 * 16 15 14 19 19 H 0.96992 * 120.00038 * 0.02562 * 1 2 3 20 20 H 0.96698 * 114.00355 * 300.00487 * 11 9 7 21 21 H 0.97003 * 122.76278 * 298.13875 * 14 12 9 22 22 H 1.08007 * 119.43600 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6248 -2.5571 -0.8897 11 8 0.4292 -2.5747 1.1670 12 6 2.2454 -3.6621 0.0005 13 1 2.9241 -3.5901 0.8505 14 7 1.5400 -4.9552 0.0011 15 6 1.7864 -5.7418 -1.1059 16 6 2.5931 -5.3353 -2.0641 17 17 3.0073 -6.1977 -3.5127 18 16 3.1727 -3.7277 -1.5780 19 1 -0.4850 0.8400 -0.0004 20 1 0.9210 -2.5291 1.9983 21 1 0.9511 -5.2316 0.7207 22 1 1.3099 -6.7077 -1.1874 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725583576.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:33 Heat of formation + Delta-G solvation = -28.257953 kcal Electronic energy + Delta-G solvation = -11073.953122 eV Core-core repulsion = 8781.746826 eV Total energy + Delta-G solvation = -2292.206296 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 221.002 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -37.85235 -36.31344 -35.26799 -32.24325 -30.11880 -27.88924 -24.92047 -21.58495 -20.07116 -18.16809 -17.09994 -15.45652 -15.04584 -14.67284 -14.31239 -14.05472 -13.25331 -12.58104 -12.56198 -12.01977 -11.43624 -11.00748 -10.89037 -10.80783 -10.48397 -10.17032 -9.72028 -9.28291 -8.68476 -8.56100 -8.44014 -6.37667 -6.09248 -4.29130 1.79383 2.38048 2.74771 2.86355 3.24646 3.33112 3.37103 3.85662 4.35496 5.18228 5.50149 5.72617 5.88327 5.96895 6.20780 7.13859 7.49487 7.71424 7.85637 8.00614 8.70465 9.14710 9.45608 10.93711 Molecular weight = 221.00amu Principal moments of inertia in cm(-1) A = 0.044809 B = 0.008736 C = 0.007796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.731419 B = 3204.241364 C = 3590.808594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.083 3.917 3 Si 0.893 3.107 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.283 1.283 7 C -0.567 4.567 8 H 0.061 0.939 9 C 0.232 3.768 10 H 0.071 0.929 11 O -0.559 6.559 12 C 0.153 3.847 13 H 0.092 0.908 14 N -0.720 5.720 15 C 0.127 3.873 16 C -0.209 4.209 17 Cl -0.025 7.025 18 S -0.113 6.113 19 H 0.262 0.738 20 H 0.346 0.654 21 H 0.417 0.583 22 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.671 -9.889 -0.634 10.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.124 4.124 3 Si 0.720 3.280 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.209 1.209 7 C -0.605 4.605 8 H 0.079 0.921 9 C 0.172 3.828 10 H 0.089 0.911 11 O -0.362 6.362 12 C -0.062 4.062 13 H 0.110 0.890 14 N -0.351 5.351 15 C -0.008 4.008 16 C -0.358 4.358 17 Cl 0.003 6.997 18 S 0.120 5.880 19 H 0.072 0.928 20 H 0.190 0.810 21 H 0.256 0.744 22 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 3.893 -8.971 -1.720 9.929 hybrid contribution -0.126 -0.136 0.967 0.985 sum 3.767 -9.107 -0.753 9.884 Atomic orbital electron populations 1.70080 1.06006 1.26658 1.46432 1.24987 0.94706 0.99265 0.93468 0.86541 0.80335 0.83404 0.77744 1.19471 1.20693 1.20867 1.21462 0.93229 0.90706 1.55148 0.92103 1.20019 0.87655 0.88417 0.86758 0.91148 1.86640 1.38056 1.96054 1.15400 1.25313 0.96869 0.87952 0.96097 0.89017 1.45045 1.51351 1.17016 1.21698 1.20292 0.96377 0.96292 0.87841 1.22842 1.15282 1.00955 0.96767 1.98276 1.92970 1.74630 1.33813 1.86563 1.59613 1.16518 1.25296 0.92843 0.81021 0.74435 0.83566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.64 12.84 55.43 0.71 -23.93 14 2 C 0.08 2.25 5.40 -17.82 -0.10 2.16 14 3 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 14 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 14 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 14 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 14 7 C -0.57 -14.92 8.31 -34.44 -0.29 -15.21 14 8 H 0.06 1.59 7.74 -52.48 -0.41 1.18 14 9 C 0.23 5.57 2.67 -27.88 -0.07 5.49 14 10 H 0.07 1.96 8.14 -51.93 -0.42 1.53 14 11 O -0.56 -13.16 12.63 -35.23 -0.45 -13.61 14 12 C 0.15 3.02 3.78 -3.60 -0.01 3.01 14 13 H 0.09 1.73 8.14 -51.93 -0.42 1.31 14 14 N -0.72 -11.85 5.78 -57.16 -0.33 -12.18 14 15 C 0.13 2.00 11.01 -16.64 -0.18 1.82 14 16 C -0.21 -3.63 7.30 28.86 0.21 -3.42 14 17 Cl -0.02 -0.37 29.31 -51.86 -1.52 -1.89 14 18 S -0.11 -2.29 22.35 -107.50 -2.40 -4.69 14 19 H 0.26 7.13 8.31 -40.82 -0.34 6.79 14 20 H 0.35 7.00 9.04 45.56 0.41 7.41 14 21 H 0.42 5.92 8.96 -40.82 -0.37 5.55 14 22 H 0.15 1.79 8.06 -52.48 -0.42 1.37 14 LS Contribution 230.63 15.07 3.48 3.48 Total: -1.00 -29.37 230.63 -6.74 -36.11 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -0.76 Total: 7.02 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: -0.44 Total: -6.16 kcal Atomic # 7 Polarization: -36.48 SS G_CDS: 0.38 Total: -36.10 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: -0.45 Total: -13.61 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 16 Polarization: -2.29 SS G_CDS: -2.40 Total: -4.69 kcal Atomic # 17 Polarization: -0.37 SS G_CDS: -1.52 Total: -1.89 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -29.37 -6.74 -36.11 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725583576.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.855 kcal (2) G-P(sol) polarization free energy of solvation -29.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds