Wall clock time and date at job start Mon Mar 30 2020 02:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31332 * 1 3 3 Si 1.86803 * 120.00092 * 2 1 4 4 H 1.48494 * 109.47398 * 270.00662 * 3 2 1 5 5 H 1.48507 * 109.46734 * 30.00590 * 3 2 1 6 6 H 1.48501 * 109.47368 * 150.00347 * 3 2 1 7 7 C 1.38943 * 120.00407 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99720 * 359.97438 * 7 2 1 9 9 O 1.34747 * 120.00458 * 179.97438 * 7 2 1 10 10 C 1.34826 * 116.99896 * 179.97438 * 9 7 2 11 11 O 1.21623 * 120.00198 * 0.02562 * 10 9 7 12 12 C 1.46557 * 119.99532 * 180.27590 * 10 9 7 13 13 C 1.34739 * 119.99694 * 179.72525 * 12 10 9 14 14 C 1.47438 * 119.99720 * 180.02562 * 13 12 10 15 15 C 1.40035 * 120.58601 * 180.02562 * 14 13 12 16 16 C 1.38466 * 118.23951 * 179.97438 * 15 14 13 17 17 N 1.32356 * 119.19815 * 0.02562 * 16 15 14 18 18 C 1.31876 * 121.12135 * 359.97438 * 17 16 15 19 19 N 1.31564 * 121.94812 * 359.74490 * 18 17 16 20 20 H 0.96993 * 119.99783 * 359.97438 * 1 2 3 21 21 H 1.07992 * 120.00474 * 359.73175 * 12 10 9 22 22 H 1.08002 * 119.99839 * 0.02562 * 13 12 10 23 23 H 1.08000 * 120.87897 * 359.95719 * 15 14 13 24 24 H 1.08006 * 120.40355 * 180.02562 * 16 15 14 25 25 H 1.08003 * 119.02954 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3133 0.0000 0.0000 3 14 2.2474 1.6177 0.0000 4 1 2.4947 2.0465 -1.4000 5 1 1.4448 2.6526 0.7002 6 1 3.5450 1.4402 0.7000 7 6 2.0081 -1.2032 -0.0005 8 1 1.4681 -2.1386 -0.0005 9 8 3.3556 -1.2032 -0.0011 10 6 3.9677 -2.4046 -0.0010 11 8 3.3053 -3.4246 -0.0010 12 6 5.4312 -2.4812 0.0045 13 6 6.0429 -3.6817 0.0102 14 6 7.5152 -3.7588 0.0163 15 6 8.1638 -4.9999 0.0217 16 6 9.5483 -5.0157 0.0268 17 7 10.2071 -3.8677 0.0270 18 6 9.5671 -2.7146 0.0219 19 7 8.2532 -2.6476 0.0114 20 1 -0.4849 0.8400 0.0004 21 1 6.0194 -1.5755 0.0042 22 1 5.4546 -4.5875 0.0102 23 1 7.5989 -5.9205 0.0221 24 1 10.0843 -5.9533 0.0306 25 1 10.1385 -1.7981 0.0218 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000754928203.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:39 Heat of formation + Delta-G solvation = -10.721142 kcal Electronic energy + Delta-G solvation = -13408.958326 eV Core-core repulsion = 10774.911124 eV Total energy + Delta-G solvation = -2634.047202 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.063 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.96448 -39.19312 -35.83655 -34.65324 -32.77128 -32.47172 -31.10692 -26.48363 -24.85502 -24.35350 -21.94741 -19.25675 -18.10527 -17.89926 -16.81312 -16.44265 -15.58820 -15.08974 -14.92938 -14.66372 -14.09219 -13.72583 -13.52564 -12.50619 -12.43724 -11.73315 -11.58238 -11.25379 -10.97565 -10.60071 -10.44569 -10.16106 -9.82681 -9.40235 -9.31452 -8.87947 -8.78132 -6.52342 -4.19710 0.31817 0.85890 1.98583 3.15877 3.19880 3.33630 3.66444 3.79998 3.94547 4.01415 4.06175 4.16130 4.56190 4.90560 4.96079 5.02508 5.35574 5.44262 5.62119 6.01781 6.25707 6.35636 6.67133 6.90779 7.61120 7.89473 7.96231 8.52274 8.85420 9.56340 10.54634 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.054539 B = 0.005690 C = 0.005162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.272765 B = 4919.785148 C = 5423.205202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.065 3.935 3 Si 0.907 3.093 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.257 1.257 7 C -0.370 4.370 8 H 0.113 0.887 9 O -0.236 6.236 10 C 0.418 3.582 11 O -0.540 6.540 12 C -0.072 4.072 13 C -0.100 4.100 14 C 0.213 3.787 15 C -0.217 4.217 16 C 0.147 3.853 17 N -0.533 5.533 18 C 0.298 3.702 19 N -0.517 5.517 20 H 0.283 0.717 21 H 0.143 0.857 22 H 0.149 0.851 23 H 0.151 0.849 24 H 0.168 0.832 25 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.691 -5.354 0.070 17.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.141 4.141 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.180 1.180 7 C -0.446 4.446 8 H 0.131 0.869 9 O -0.143 6.143 10 C 0.267 3.733 11 O -0.438 6.438 12 C -0.094 4.094 13 C -0.120 4.120 14 C 0.070 3.930 15 C -0.238 4.238 16 C -0.018 4.018 17 N -0.248 5.248 18 C 0.010 3.990 19 N -0.232 5.232 20 H 0.094 0.906 21 H 0.160 0.840 22 H 0.166 0.834 23 H 0.169 0.831 24 H 0.185 0.815 25 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 16.843 -4.618 0.067 17.465 hybrid contribution -0.302 -0.040 -0.015 0.305 sum 16.541 -4.658 0.052 17.184 Atomic orbital electron populations 1.69552 1.05930 1.28951 1.45308 1.24657 0.95075 0.99046 0.95289 0.86172 0.80455 0.80962 0.79222 1.19587 1.20523 1.18043 1.20807 0.76283 0.97153 1.50316 0.86947 1.83561 1.23972 1.31394 1.75404 1.20629 0.88615 0.82680 0.81374 1.90709 1.66826 1.35808 1.50477 1.22658 0.91926 0.99466 0.95321 1.21928 0.88937 0.99301 1.01849 1.20447 0.94311 0.88670 0.89546 1.23007 0.96853 0.99858 1.04128 1.23157 0.91344 0.96980 0.90298 1.68368 1.42238 0.99309 1.14876 1.24921 0.87543 0.96112 0.90424 1.68566 1.08325 1.32034 1.14266 0.90626 0.83972 0.83378 0.83117 0.81488 0.78722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.84 13.95 55.49 0.77 -24.06 15 2 C 0.07 1.83 5.50 -17.50 -0.10 1.74 15 3 Si 0.91 21.05 28.62 -169.99 -4.87 16.19 15 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 15 5 H -0.28 -6.22 7.11 56.52 0.40 -5.82 15 6 H -0.26 -5.87 7.11 56.52 0.40 -5.47 15 7 C -0.37 -10.90 10.11 30.99 0.31 -10.58 15 8 H 0.11 3.62 7.09 -52.48 -0.37 3.25 15 9 O -0.24 -6.26 8.58 -21.59 -0.19 -6.44 15 10 C 0.42 9.98 7.83 34.08 0.27 10.25 15 11 O -0.54 -14.27 15.48 -19.36 -0.30 -14.57 15 12 C -0.07 -1.31 9.70 -37.47 -0.36 -1.68 15 13 C -0.10 -1.56 9.49 -37.08 -0.35 -1.91 15 14 C 0.21 2.90 6.74 -82.77 -0.56 2.35 15 15 C -0.22 -2.26 9.95 -38.82 -0.39 -2.65 15 16 C 0.15 1.42 11.30 -17.24 -0.19 1.22 15 17 N -0.53 -6.14 10.42 -14.64 -0.15 -6.29 15 18 C 0.30 3.49 12.27 -92.28 -1.13 2.36 15 19 N -0.52 -7.22 9.50 -11.25 -0.11 -7.33 15 20 H 0.28 7.42 8.31 -40.82 -0.34 7.09 15 21 H 0.14 2.43 7.45 -52.49 -0.39 2.04 15 22 H 0.15 2.21 7.52 -52.49 -0.39 1.81 15 23 H 0.15 1.17 8.06 -52.49 -0.42 0.75 15 24 H 0.17 0.99 8.06 -52.48 -0.42 0.57 15 25 H 0.20 1.64 8.06 -52.48 -0.42 1.22 15 LS Contribution 245.30 15.07 3.70 3.70 Total: -1.00 -32.81 245.30 -5.20 -38.01 By element: Atomic # 1 Polarization: 1.27 SS G_CDS: -1.56 Total: -0.29 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: -2.50 Total: 1.09 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: 0.51 Total: -37.69 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: -0.49 Total: -21.01 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.87 Total: 16.19 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -32.81 -5.20 -38.01 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754928203.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.290 kcal (2) G-P(sol) polarization free energy of solvation -32.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds