Wall clock time and date at job start Mon Mar 30 2020 02:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31332 * 1 3 3 Si 1.86803 * 120.00092 * 2 1 4 4 H 1.48494 * 109.47398 * 270.00662 * 3 2 1 5 5 H 1.48507 * 109.46734 * 30.00590 * 3 2 1 6 6 H 1.48501 * 109.47368 * 150.00347 * 3 2 1 7 7 C 1.38943 * 120.00407 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99720 * 359.97438 * 7 2 1 9 9 O 1.34747 * 120.00458 * 179.97438 * 7 2 1 10 10 C 1.34826 * 116.99896 * 179.97438 * 9 7 2 11 11 O 1.21623 * 120.00198 * 0.02562 * 10 9 7 12 12 C 1.46557 * 119.99532 * 180.27590 * 10 9 7 13 13 C 1.34739 * 119.99694 * 179.72525 * 12 10 9 14 14 C 1.47438 * 119.99720 * 180.02562 * 13 12 10 15 15 C 1.40035 * 120.58601 * 180.02562 * 14 13 12 16 16 C 1.38466 * 118.23951 * 179.97438 * 15 14 13 17 17 N 1.32356 * 119.19815 * 0.02562 * 16 15 14 18 18 C 1.31876 * 121.12135 * 359.97438 * 17 16 15 19 19 N 1.31564 * 121.94812 * 359.74490 * 18 17 16 20 20 H 0.96993 * 119.99783 * 359.97438 * 1 2 3 21 21 H 1.07992 * 120.00474 * 359.73175 * 12 10 9 22 22 H 1.08002 * 119.99839 * 0.02562 * 13 12 10 23 23 H 1.08000 * 120.87897 * 359.95719 * 15 14 13 24 24 H 1.08006 * 120.40355 * 180.02562 * 16 15 14 25 25 H 1.08003 * 119.02954 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3133 0.0000 0.0000 3 14 2.2474 1.6177 0.0000 4 1 2.4947 2.0465 -1.4000 5 1 1.4448 2.6526 0.7002 6 1 3.5450 1.4402 0.7000 7 6 2.0081 -1.2032 -0.0005 8 1 1.4681 -2.1386 -0.0005 9 8 3.3556 -1.2032 -0.0011 10 6 3.9677 -2.4046 -0.0010 11 8 3.3053 -3.4246 -0.0010 12 6 5.4312 -2.4812 0.0045 13 6 6.0429 -3.6817 0.0102 14 6 7.5152 -3.7588 0.0163 15 6 8.1638 -4.9999 0.0217 16 6 9.5483 -5.0157 0.0268 17 7 10.2071 -3.8677 0.0270 18 6 9.5671 -2.7146 0.0219 19 7 8.2532 -2.6476 0.0114 20 1 -0.4849 0.8400 0.0004 21 1 6.0194 -1.5755 0.0042 22 1 5.4546 -4.5875 0.0102 23 1 7.5989 -5.9205 0.0221 24 1 10.0843 -5.9533 0.0306 25 1 10.1385 -1.7981 0.0218 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000754928203.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:39 Heat of formation + Delta-G solvation = -32.602053 kcal Electronic energy + Delta-G solvation = -13409.907153 eV Core-core repulsion = 10774.911124 eV Total energy + Delta-G solvation = -2634.996029 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.063 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.90101 -41.15806 -37.71655 -35.94244 -34.57890 -33.76793 -32.29919 -28.28264 -26.27271 -25.30496 -23.38965 -20.84693 -20.20195 -19.22411 -18.18274 -17.63823 -16.90137 -16.74161 -16.38541 -15.94498 -15.79832 -14.93531 -14.57282 -14.35458 -14.20043 -13.42800 -13.25345 -12.52757 -12.36863 -12.31361 -11.89648 -11.85886 -11.32067 -11.15301 -10.88471 -10.32743 -10.07387 -8.61035 -6.44396 -0.83877 0.02855 0.69936 1.33034 1.38010 1.54348 2.03661 2.22162 2.30221 2.85363 2.92248 2.95458 3.27604 3.55712 3.93734 4.09662 4.18913 4.29163 4.61997 4.69641 5.02469 5.19068 5.39431 5.43958 5.82864 5.98260 6.43609 6.74419 7.06268 7.49897 8.51194 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.054539 B = 0.005690 C = 0.005162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.272765 B = 4919.785148 C = 5423.205202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.019 3.981 3 Si 0.982 3.018 4 H -0.258 1.258 5 H -0.261 1.261 6 H -0.252 1.252 7 C -0.409 4.409 8 H 0.062 0.938 9 O -0.248 6.248 10 C 0.431 3.569 11 O -0.572 6.572 12 C -0.114 4.114 13 C -0.041 4.041 14 C 0.176 3.824 15 C -0.196 4.196 16 C 0.152 3.848 17 N -0.537 5.537 18 C 0.290 3.710 19 N -0.537 5.537 20 H 0.292 0.708 21 H 0.156 0.844 22 H 0.156 0.844 23 H 0.183 0.817 24 H 0.211 0.789 25 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.336 -5.832 0.076 21.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.183 4.183 3 Si 0.802 3.198 4 H -0.183 1.183 5 H -0.186 1.186 6 H -0.176 1.176 7 C -0.485 4.485 8 H 0.080 0.920 9 O -0.157 6.157 10 C 0.282 3.718 11 O -0.470 6.470 12 C -0.135 4.135 13 C -0.060 4.060 14 C 0.034 3.966 15 C -0.218 4.218 16 C -0.013 4.013 17 N -0.251 5.251 18 C 0.002 3.998 19 N -0.253 5.253 20 H 0.103 0.897 21 H 0.173 0.827 22 H 0.173 0.827 23 H 0.200 0.800 24 H 0.227 0.773 25 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 20.481 -5.113 0.072 21.109 hybrid contribution -1.072 -0.299 -0.018 1.113 sum 19.409 -5.412 0.055 20.149 Atomic orbital electron populations 1.69636 1.07586 1.30563 1.46779 1.25614 0.95993 1.02738 0.93913 0.85091 0.79025 0.75730 0.79989 1.18269 1.18551 1.17601 1.20430 0.77573 0.96079 1.54394 0.91960 1.83569 1.22318 1.32401 1.77364 1.21765 0.90715 0.81567 0.77791 1.90679 1.68344 1.36742 1.51220 1.22362 0.88107 1.01392 1.01668 1.22255 0.90615 0.98349 0.94808 1.20358 0.93070 0.90332 0.92843 1.23371 0.97522 0.99585 1.01279 1.23910 0.91195 0.97939 0.88279 1.68469 1.42602 0.99911 1.14154 1.25440 0.86905 0.97353 0.90070 1.68508 1.09497 1.32701 1.14549 0.89739 0.82664 0.82654 0.80011 0.77265 0.76280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.61 13.95 21.66 0.30 -54.31 15 2 C 0.02 1.10 5.50 84.94 0.47 1.56 15 3 Si 0.98 43.93 28.62 68.60 1.96 45.89 15 4 H -0.26 -10.94 7.11 99.48 0.71 -10.23 15 5 H -0.26 -10.76 7.11 99.48 0.71 -10.05 15 6 H -0.25 -10.99 7.11 99.48 0.71 -10.28 15 7 C -0.41 -25.53 10.11 67.99 0.69 -24.84 15 8 H 0.06 4.37 7.09 -2.91 -0.02 4.35 15 9 O -0.25 -13.68 8.58 11.46 0.10 -13.58 15 10 C 0.43 21.26 7.83 69.99 0.55 21.81 15 11 O -0.57 -31.42 15.48 19.44 0.30 -31.12 15 12 C -0.11 -4.12 9.70 23.64 0.23 -3.89 15 13 C -0.04 -1.19 9.49 23.89 0.23 -0.97 15 14 C 0.18 4.26 6.74 41.77 0.28 4.55 15 15 C -0.20 -3.19 9.95 22.76 0.23 -2.96 15 16 C 0.15 2.16 11.30 84.67 0.96 3.12 15 17 N -0.54 -10.17 10.42 -200.23 -2.09 -12.26 15 18 C 0.29 5.87 12.27 180.93 2.22 8.09 15 19 N -0.54 -13.61 9.50 -189.52 -1.80 -15.41 15 20 H 0.29 15.77 8.31 -92.71 -0.77 15.00 15 21 H 0.16 5.21 7.45 -2.91 -0.02 5.19 15 22 H 0.16 4.29 7.52 -2.91 -0.02 4.27 15 23 H 0.18 1.79 8.06 -2.91 -0.02 1.77 15 24 H 0.21 1.15 8.06 -2.91 -0.02 1.13 15 25 H 0.22 3.03 8.06 -2.91 -0.02 3.00 15 Total: -1.00 -76.01 245.30 5.84 -70.18 By element: Atomic # 1 Polarization: 2.93 SS G_CDS: 1.22 Total: 4.15 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: 5.84 Total: 6.46 kcal Atomic # 7 Polarization: -78.39 SS G_CDS: -3.59 Total: -81.97 kcal Atomic # 8 Polarization: -45.10 SS G_CDS: 0.40 Total: -44.70 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 1.96 Total: 45.89 kcal Total: -76.01 5.84 -70.18 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754928203.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.574 kcal (2) G-P(sol) polarization free energy of solvation -76.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds