Wall clock time and date at job start Mon Mar 30 2020 02:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31365 * 1 3 3 Si 1.86799 * 120.00257 * 2 1 4 4 H 1.48503 * 109.47246 * 240.00231 * 3 2 1 5 5 H 1.48493 * 109.46946 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46910 * 120.00100 * 3 2 1 7 7 C 1.39054 * 119.99828 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00156 * 179.97438 * 7 2 1 9 9 N 1.36875 * 119.99715 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99857 * 180.02562 * 9 7 2 11 11 O 1.21597 * 120.00057 * 359.97438 * 10 9 7 12 12 C 1.47741 * 119.99985 * 179.97438 * 10 9 7 13 13 C 1.39774 * 120.48745 * 0.04656 * 12 10 9 14 14 N 1.31740 * 120.93540 * 179.97438 * 13 12 10 15 15 C 1.31724 * 122.07854 * 359.97438 * 14 13 12 16 16 C 1.39919 * 120.85819 * 359.97438 * 15 14 13 17 17 C 1.47176 * 120.51555 * 179.97438 * 16 15 14 18 18 O 1.21244 * 120.00300 * 179.97438 * 17 16 15 19 19 C 1.39742 * 120.48280 * 179.97438 * 12 10 9 20 20 H 0.97003 * 119.99552 * 359.97438 * 1 2 3 21 21 H 0.97003 * 120.00261 * 0.02562 * 9 7 2 22 22 H 1.08003 * 119.53017 * 359.97438 * 13 12 10 23 23 H 1.08002 * 119.56796 * 180.02562 * 15 14 13 24 24 H 1.08009 * 120.00055 * 0.02562 * 17 16 15 25 25 H 1.08003 * 120.93134 * 0.04946 * 19 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2477 1.6177 0.0000 4 1 3.1015 1.6964 -1.2125 5 1 1.2828 2.7464 0.0006 6 1 3.1015 1.6963 1.2125 7 6 2.0089 -1.2043 -0.0005 8 1 3.0888 -1.2043 -0.0010 9 7 1.3244 -2.3896 -0.0005 10 6 1.9982 -3.5568 -0.0005 11 8 3.2142 -3.5569 -0.0010 12 6 1.2595 -4.8363 0.0000 13 6 -0.1382 -4.8481 -0.0004 14 7 -0.8059 -5.9837 -0.0004 15 6 -0.1983 -7.1525 -0.0005 16 6 1.1985 -7.2352 -0.0011 17 6 1.8696 -8.5450 -0.0007 18 8 3.0805 -8.6058 -0.0017 19 6 1.9479 -6.0523 -0.0005 20 1 -0.4849 0.8401 0.0004 21 1 0.3544 -2.3895 -0.0005 22 1 -0.6785 -3.9129 -0.0007 23 1 -0.7859 -8.0586 -0.0009 24 1 1.2833 -9.4522 -0.0003 25 1 3.0276 -6.0791 -0.0005 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143316071.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:18 Heat of formation + Delta-G solvation = -61.936017 kcal Electronic energy + Delta-G solvation = -13741.267323 eV Core-core repulsion = 11104.999277 eV Total energy + Delta-G solvation = -2636.268045 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.063 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.61877 -40.07275 -39.32801 -36.24566 -33.75164 -33.57293 -32.54927 -27.56371 -26.40246 -24.99834 -22.89255 -21.26714 -20.29647 -18.61590 -18.07881 -17.73006 -16.75208 -16.34422 -16.00011 -15.94934 -15.61336 -15.31397 -14.73409 -14.34981 -14.23981 -13.64476 -13.51626 -13.00609 -12.53362 -12.14886 -11.67824 -11.45408 -11.01995 -10.71740 -10.38072 -10.32132 -10.16452 -8.62543 -6.07708 -0.66140 -0.17088 1.31936 1.40070 1.44490 1.51238 2.05291 2.21724 2.78260 2.86162 3.19131 3.19972 3.39401 3.73674 3.79606 3.95652 4.14069 4.37914 4.62296 4.88233 5.06494 5.28642 5.43616 5.83032 6.39337 6.45492 6.71821 6.93720 7.30761 7.87594 8.53855 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.053866 B = 0.006558 C = 0.005858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.684078 B = 4268.665086 C = 4778.507183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C -0.004 4.004 3 Si 1.000 3.000 4 H -0.270 1.270 5 H -0.264 1.264 6 H -0.270 1.270 7 C -0.341 4.341 8 H 0.085 0.915 9 N -0.542 5.542 10 C 0.461 3.539 11 O -0.639 6.639 12 C -0.184 4.184 13 C 0.151 3.849 14 N -0.499 5.499 15 C 0.175 3.825 16 C -0.251 4.251 17 C 0.405 3.595 18 O -0.507 6.507 19 C 0.005 3.995 20 H 0.286 0.714 21 H 0.399 0.601 22 H 0.164 0.836 23 H 0.230 0.770 24 H 0.189 0.811 25 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.973 -12.705 0.002 14.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.207 4.207 3 Si 0.822 3.178 4 H -0.195 1.195 5 H -0.188 1.188 6 H -0.195 1.195 7 C -0.470 4.470 8 H 0.103 0.897 9 N -0.176 5.176 10 C 0.250 3.750 11 O -0.529 6.529 12 C -0.189 4.189 13 C -0.006 4.006 14 N -0.207 5.207 15 C 0.016 3.984 16 C -0.254 4.254 17 C 0.265 3.735 18 O -0.382 6.382 19 C -0.022 4.022 20 H 0.096 0.904 21 H 0.235 0.765 22 H 0.181 0.819 23 H 0.247 0.753 24 H 0.204 0.796 25 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -5.619 -12.477 0.001 13.683 hybrid contribution 1.023 1.333 0.001 1.680 sum -4.596 -11.144 0.002 12.054 Atomic orbital electron populations 1.69617 1.06979 1.30349 1.47231 1.26201 0.96638 1.02697 0.95137 0.84890 0.77857 0.75853 0.79193 1.19473 1.18844 1.19482 1.19782 0.93187 0.83603 1.50420 0.89728 1.41857 1.09608 1.04613 1.61546 1.18199 0.87240 0.84266 0.85272 1.90574 1.15227 1.87731 1.59320 1.20995 0.95878 0.94264 1.07811 1.23256 0.89476 0.97995 0.89836 1.67805 1.40298 0.98545 1.14057 1.24135 0.90223 0.97234 0.86805 1.22424 0.97008 0.96907 1.09083 1.24896 0.88996 0.92051 0.67566 1.90566 1.20395 1.90419 1.36802 1.21981 1.00997 0.91202 0.88016 0.90428 0.76456 0.81918 0.75346 0.79556 0.85758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -46.86 13.05 21.68 0.28 -46.58 15 2 C 0.00 -0.22 5.50 84.96 0.47 0.25 15 3 Si 1.00 41.52 29.55 68.60 2.03 43.54 15 4 H -0.27 -11.12 7.11 99.48 0.71 -10.41 15 5 H -0.26 -10.17 7.11 99.48 0.71 -9.46 15 6 H -0.27 -11.12 7.11 99.48 0.71 -10.41 15 7 C -0.34 -19.28 9.68 84.10 0.81 -18.47 15 8 H 0.08 5.09 7.15 -2.91 -0.02 5.07 15 9 N -0.54 -28.40 5.23 -309.71 -1.62 -30.02 15 10 C 0.46 23.71 7.73 86.76 0.67 24.38 15 11 O -0.64 -37.94 15.98 -4.02 -0.06 -38.01 15 12 C -0.18 -7.36 5.88 -20.03 -0.12 -7.48 15 13 C 0.15 5.07 10.71 85.08 0.91 5.98 15 14 N -0.50 -13.48 10.33 -193.40 -2.00 -15.48 15 15 C 0.17 3.31 10.95 85.12 0.93 4.24 15 16 C -0.25 -5.98 5.88 -20.09 -0.12 -6.10 15 17 C 0.40 7.22 11.48 70.17 0.81 8.03 15 18 O -0.51 -14.84 17.23 -2.92 -0.05 -14.89 15 19 C 0.01 0.18 9.25 23.07 0.21 0.39 15 20 H 0.29 13.73 8.31 -92.71 -0.77 12.96 15 21 H 0.40 19.35 5.95 -92.71 -0.55 18.80 15 22 H 0.16 5.37 6.40 -2.91 -0.02 5.35 15 23 H 0.23 1.35 8.06 -2.91 -0.02 1.32 15 24 H 0.19 0.64 8.06 -2.91 -0.02 0.61 15 25 H 0.12 5.07 7.40 -2.91 -0.02 5.05 15 Total: -1.00 -75.16 241.08 3.85 -71.31 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: 0.69 Total: 18.88 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: 4.58 Total: 11.23 kcal Atomic # 7 Polarization: -88.74 SS G_CDS: -3.33 Total: -92.07 kcal Atomic # 8 Polarization: -52.78 SS G_CDS: -0.11 Total: -52.90 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.54 kcal Total: -75.16 3.85 -71.31 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143316071.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.377 kcal (2) G-P(sol) polarization free energy of solvation -75.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds