Wall clock time and date at job start Mon Mar 30 2020 02:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99751 * 2 1 4 4 H 1.48505 * 109.46828 * 239.99418 * 3 2 1 5 5 H 1.48507 * 109.47333 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47471 * 119.99369 * 3 2 1 7 7 C 1.37874 * 120.00262 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00084 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00017 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.46769 * 60.00482 * 9 7 2 11 11 O 1.42894 * 109.47277 * 300.00217 * 9 7 2 12 12 C 1.52998 * 109.47070 * 179.97438 * 9 7 2 13 13 H 1.09002 * 110.01114 * 59.30353 * 12 9 7 14 14 C 1.53879 * 110.02745 * 180.68478 * 12 9 7 15 15 C 1.54158 * 108.70718 * 166.52265 * 14 12 9 16 16 S 1.82919 * 105.08326 * 332.08882 * 15 14 12 17 17 O 1.42096 * 109.35348 * 115.52557 * 16 15 14 18 18 O 1.42105 * 109.35290 * 248.72309 * 16 15 14 19 19 C 1.55051 * 110.02902 * 297.92386 * 12 9 7 20 20 H 0.96993 * 120.00134 * 0.02562 * 1 2 3 21 21 H 0.96698 * 114.00505 * 299.99764 * 11 9 7 22 22 H 1.09004 * 109.64086 * 286.37484 * 14 12 9 23 23 H 1.08998 * 109.64936 * 46.79591 * 14 12 9 24 24 H 1.08998 * 110.32417 * 90.99028 * 15 14 12 25 25 H 1.09000 * 110.31837 * 213.08613 * 15 14 12 26 26 H 1.09001 * 110.78634 * 316.49590 * 19 12 9 27 27 H 1.09000 * 110.78963 * 79.95701 * 19 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4992 0.0005 10 1 0.6249 -2.5571 -0.8897 11 8 0.4291 -2.5746 1.1669 12 6 2.2454 -3.6620 0.0005 13 1 2.8852 -3.6057 0.8812 14 6 1.4892 -5.0020 -0.0167 15 6 2.4858 -6.1279 -0.3568 16 16 3.7845 -5.3256 -1.3645 17 8 5.0205 -5.3743 -0.6652 18 8 3.7058 -5.8028 -2.7007 19 6 3.1090 -3.6223 -1.2866 20 1 -0.4850 0.8400 -0.0004 21 1 0.9208 -2.5291 1.9983 22 1 1.0481 -5.1865 0.9629 23 1 0.7039 -4.9700 -0.7719 24 1 2.9159 -6.5410 0.5556 25 1 1.9903 -6.9118 -0.9296 26 1 2.4922 -3.4103 -2.1599 27 1 3.9115 -2.8908 -1.1916 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001536213956.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:59 Heat of formation + Delta-G solvation = -159.280912 kcal Electronic energy + Delta-G solvation = -13585.348440 eV Core-core repulsion = 11048.010403 eV Total energy + Delta-G solvation = -2537.338037 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 220.060 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.90837 -38.00286 -37.00587 -35.74793 -34.22895 -31.31728 -28.38704 -26.37130 -23.81513 -21.41630 -19.77854 -18.92952 -17.65501 -17.43994 -16.64365 -16.63416 -16.09028 -15.50008 -15.01618 -14.93216 -14.27937 -13.60332 -13.26248 -13.10703 -13.06735 -12.96715 -12.85187 -12.71471 -12.47027 -12.01613 -11.93268 -11.61005 -11.22116 -10.84231 -10.66327 -10.05378 -8.11881 -6.34887 -0.78207 1.41902 1.42876 1.49901 1.69595 2.39812 2.72789 3.13179 3.16824 3.61152 3.85249 3.91474 4.11019 4.19115 4.46408 4.63536 4.81428 4.94923 5.01406 5.17320 5.30621 5.67578 5.80162 6.12017 6.76316 7.37613 7.59465 8.91952 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.042876 B = 0.009001 C = 0.008015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.890217 B = 3110.073935 C = 3492.556930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.027 3.973 3 Si 0.948 3.052 4 H -0.271 1.271 5 H -0.289 1.289 6 H -0.268 1.268 7 C -0.579 4.579 8 H 0.064 0.936 9 C 0.242 3.758 10 H 0.032 0.968 11 O -0.579 6.579 12 C -0.112 4.112 13 H 0.093 0.907 14 C -0.105 4.105 15 C -0.562 4.562 16 S 2.396 3.604 17 O -0.979 6.979 18 O -0.983 6.983 19 C -0.558 4.558 20 H 0.260 0.740 21 H 0.359 0.641 22 H 0.101 0.899 23 H 0.080 0.920 24 H 0.157 0.843 25 H 0.159 0.841 26 H 0.134 0.866 27 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.107 -9.542 0.614 10.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.176 4.176 3 Si 0.774 3.226 4 H -0.196 1.196 5 H -0.214 1.214 6 H -0.193 1.193 7 C -0.617 4.617 8 H 0.082 0.918 9 C 0.184 3.816 10 H 0.049 0.951 11 O -0.383 6.383 12 C -0.133 4.133 13 H 0.112 0.888 14 C -0.143 4.143 15 C -0.694 4.694 16 S 2.585 3.415 17 O -0.976 6.976 18 O -0.980 6.980 19 C -0.689 4.689 20 H 0.069 0.931 21 H 0.205 0.795 22 H 0.120 0.880 23 H 0.098 0.902 24 H 0.175 0.825 25 H 0.177 0.823 26 H 0.152 0.848 27 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 4.325 -9.878 -0.328 10.789 hybrid contribution 0.048 1.616 0.589 1.721 sum 4.373 -8.262 0.261 9.352 Atomic orbital electron populations 1.70178 1.07445 1.27250 1.48848 1.25817 0.95373 1.02571 0.93816 0.85783 0.78473 0.79340 0.79012 1.19603 1.21436 1.19334 1.22096 0.93734 0.92554 1.53302 0.91819 1.19195 0.87298 0.89937 0.85208 0.95066 1.86514 1.39205 1.96323 1.16272 1.22549 0.97876 0.96961 0.95890 0.88824 1.21933 0.97480 0.89321 1.05590 1.30292 1.14319 1.09091 1.15744 1.08701 0.77489 0.79851 0.75480 1.93532 1.42434 1.86425 1.75236 1.93524 1.88206 1.79632 1.36612 1.30473 1.11169 1.20864 1.06368 0.93131 0.79537 0.88019 0.90175 0.82513 0.82313 0.84788 0.84856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.47 12.84 21.45 0.28 -51.20 15 2 C 0.03 1.41 5.40 84.65 0.46 1.87 15 3 Si 0.95 41.76 29.54 68.60 2.03 43.79 15 4 H -0.27 -11.61 7.11 99.48 0.71 -10.91 15 5 H -0.29 -12.72 7.11 99.48 0.71 -12.02 15 6 H -0.27 -11.42 7.11 99.48 0.71 -10.71 15 7 C -0.58 -29.09 8.23 25.60 0.21 -28.88 15 8 H 0.06 3.06 7.15 -2.91 -0.02 3.04 15 9 C 0.24 10.86 2.39 29.85 0.07 10.93 15 10 H 0.03 1.58 8.14 -2.39 -0.02 1.56 15 11 O -0.58 -26.57 12.40 -148.98 -1.85 -28.42 15 12 C -0.11 -3.65 2.31 -9.80 -0.02 -3.67 15 13 H 0.09 2.84 8.14 -2.39 -0.02 2.82 15 14 C -0.10 -2.63 5.45 31.28 0.17 -2.46 15 15 C -0.56 -10.66 7.26 72.37 0.53 -10.14 15 16 S 2.40 62.75 6.11 -56.49 -0.35 62.40 15 17 O -0.98 -31.71 18.15 -127.49 -2.31 -34.02 15 18 O -0.98 -31.73 18.15 -127.49 -2.31 -34.04 15 19 C -0.56 -16.85 6.06 72.68 0.44 -16.41 15 20 H 0.26 14.26 8.31 -92.71 -0.77 13.49 15 21 H 0.36 14.21 9.04 -74.06 -0.67 13.54 15 22 H 0.10 2.39 8.13 -2.38 -0.02 2.37 15 23 H 0.08 2.05 8.10 -2.39 -0.02 2.03 15 24 H 0.16 2.29 8.14 -2.39 -0.02 2.27 15 25 H 0.16 2.28 8.14 -2.39 -0.02 2.26 15 26 H 0.13 4.05 8.10 -2.39 -0.02 4.03 15 27 H 0.13 4.09 7.64 -2.39 -0.02 4.07 15 Total: -1.00 -70.23 244.64 -2.16 -72.38 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: 0.51 Total: 17.86 kcal Atomic # 6 Polarization: -50.61 SS G_CDS: 1.85 Total: -48.76 kcal Atomic # 7 Polarization: -51.47 SS G_CDS: 0.28 Total: -51.20 kcal Atomic # 8 Polarization: -90.01 SS G_CDS: -6.47 Total: -96.48 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.79 kcal Atomic # 16 Polarization: 62.75 SS G_CDS: -0.35 Total: 62.40 kcal Total: -70.23 -2.16 -72.38 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001536213956.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.898 kcal (2) G-P(sol) polarization free energy of solvation -70.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds