Wall clock time and date at job start Mon Mar 30 2020 02:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86807 * 119.99441 * 2 1 4 4 H 1.48498 * 109.47005 * 269.99499 * 3 2 1 5 5 H 1.48494 * 109.47310 * 30.00227 * 3 2 1 6 6 H 1.48505 * 109.46691 * 149.99939 * 3 2 1 7 7 C 1.37877 * 120.00428 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99998 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99885 * 180.02562 * 7 2 1 10 10 H 1.09002 * 109.47124 * 299.99778 * 9 7 2 11 11 O 1.42895 * 109.47664 * 59.99521 * 9 7 2 12 12 C 1.52998 * 109.47279 * 180.02562 * 9 7 2 13 13 H 1.09003 * 109.53328 * 300.36077 * 12 9 7 14 14 C 1.53880 * 109.65164 * 179.97438 * 12 9 7 15 15 C 1.55047 * 106.62283 * 192.96625 * 14 12 9 16 16 S 1.83285 * 102.56779 * 42.43189 * 15 14 12 17 17 O 1.42102 * 109.35201 * 90.18665 * 16 15 14 18 18 O 1.42107 * 109.35347 * 223.38442 * 16 15 14 19 19 C 1.54171 * 109.64773 * 60.71887 * 12 9 7 20 20 H 0.96994 * 120.00720 * 0.02562 * 1 2 3 21 21 H 0.96703 * 113.99925 * 60.00579 * 11 9 7 22 22 H 1.09000 * 110.02434 * 73.67028 * 14 12 9 23 23 H 1.08998 * 110.01939 * 312.25739 * 14 12 9 24 24 H 1.08999 * 110.78520 * 160.70277 * 15 14 12 25 25 H 1.09000 * 110.78712 * 284.15870 * 15 14 12 26 26 H 1.09002 * 110.31354 * 28.85871 * 19 12 9 27 27 H 1.09003 * 110.40260 * 266.71164 * 19 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0014 9 6 3.5116 -1.1939 0.0011 10 1 3.8752 -0.6802 -0.8889 11 8 3.9875 -0.5199 1.1678 12 6 4.0217 -2.6363 0.0010 13 1 3.6534 -3.1532 0.8871 14 6 5.5605 -2.6409 0.0009 15 6 5.9997 -4.0900 -0.3325 16 16 4.8471 -4.5561 -1.6793 17 8 5.4211 -4.2081 -2.9318 18 8 4.3740 -5.8777 -1.4579 19 6 3.5256 -3.3615 -1.2658 20 1 -0.4851 0.8399 -0.0004 21 1 3.7020 -0.9232 1.9990 22 1 5.9347 -2.3542 0.9837 23 1 5.9357 -1.9533 -0.7570 24 1 7.0319 -4.1106 -0.6822 25 1 5.8696 -4.7421 0.5311 26 1 3.3898 -2.6501 -2.0804 27 1 2.5919 -3.8858 -1.0624 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001536213959.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:03 Heat of formation + Delta-G solvation = -126.032852 kcal Electronic energy + Delta-G solvation = -13646.764828 eV Core-core repulsion = 11110.868535 eV Total energy + Delta-G solvation = -2535.896292 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 220.060 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -37.70439 -36.77640 -35.77005 -34.48567 -32.38758 -30.18285 -27.05285 -25.04336 -22.09965 -20.11098 -18.61158 -17.42462 -16.58201 -16.12296 -15.41432 -14.96240 -14.70316 -14.27349 -13.86225 -13.15861 -12.81468 -12.57389 -12.01411 -11.93175 -11.77259 -11.74408 -11.51251 -11.22869 -10.87504 -10.52035 -10.31123 -10.10823 -9.87806 -9.14435 -8.72764 -8.41422 -6.22689 -4.34995 0.32549 2.78331 3.31275 3.41754 3.64917 3.82812 4.22688 4.43409 4.65300 4.90812 4.95363 5.14619 5.15283 5.33138 5.59123 5.73909 5.86475 6.00453 6.20820 6.30512 6.44063 7.12824 7.43965 8.17210 8.69786 8.87067 9.40836 10.87454 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.047638 B = 0.009243 C = 0.008588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.629731 B = 3028.737447 C = 3259.630403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.083 3.917 3 Si 0.868 3.132 4 H -0.286 1.286 5 H -0.295 1.295 6 H -0.217 1.217 7 C -0.566 4.566 8 H 0.076 0.924 9 C 0.204 3.796 10 H 0.061 0.939 11 O -0.580 6.580 12 C -0.100 4.100 13 H 0.087 0.913 14 C -0.112 4.112 15 C -0.589 4.589 16 S 2.370 3.630 17 O -0.950 6.950 18 O -0.953 6.953 19 C -0.552 4.552 20 H 0.266 0.734 21 H 0.358 0.642 22 H 0.096 0.904 23 H 0.082 0.918 24 H 0.129 0.871 25 H 0.131 0.869 26 H 0.141 0.859 27 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.310 -5.243 0.943 11.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.122 4.122 3 Si 0.694 3.306 4 H -0.213 1.213 5 H -0.222 1.222 6 H -0.140 1.140 7 C -0.603 4.603 8 H 0.094 0.906 9 C 0.146 3.854 10 H 0.078 0.922 11 O -0.386 6.386 12 C -0.120 4.120 13 H 0.105 0.895 14 C -0.151 4.151 15 C -0.719 4.719 16 S 2.556 3.444 17 O -0.947 6.947 18 O -0.950 6.950 19 C -0.684 4.684 20 H 0.076 0.924 21 H 0.205 0.795 22 H 0.114 0.886 23 H 0.101 0.899 24 H 0.147 0.853 25 H 0.150 0.850 26 H 0.159 0.841 27 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 10.525 -5.481 -0.249 11.870 hybrid contribution -0.216 1.016 0.903 1.376 sum 10.309 -4.465 0.654 11.253 Atomic orbital electron populations 1.69940 1.06784 1.27620 1.48234 1.25022 0.94634 1.00001 0.92512 0.87072 0.83031 0.81978 0.78506 1.21291 1.22158 1.13961 1.21516 0.89523 0.94934 1.54346 0.90586 1.19847 0.94186 0.85472 0.85931 0.92178 1.86696 1.77829 1.57525 1.16549 1.22201 0.92442 1.01553 0.95795 0.89477 1.22301 0.95760 0.91816 1.05228 1.30593 1.14959 1.07434 1.18893 1.09562 0.80030 0.77282 0.77533 1.93579 1.77062 1.85126 1.38903 1.93569 1.79934 1.34906 1.86628 1.30302 1.15369 1.14635 1.08072 0.92449 0.79550 0.88569 0.89898 0.85303 0.85020 0.84127 0.84278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.99 13.96 55.43 0.77 -25.22 15 2 C 0.08 2.27 5.47 -17.82 -0.10 2.17 15 3 Si 0.87 20.64 26.99 -169.99 -4.59 16.05 15 4 H -0.29 -6.86 7.11 56.52 0.40 -6.46 15 5 H -0.29 -7.15 7.11 56.52 0.40 -6.74 15 6 H -0.22 -4.97 5.31 56.52 0.30 -4.67 15 7 C -0.57 -14.30 8.78 -34.44 -0.30 -14.61 15 8 H 0.08 2.06 7.61 -52.49 -0.40 1.66 15 9 C 0.20 4.16 1.74 -27.88 -0.05 4.11 15 10 H 0.06 1.27 7.56 -51.93 -0.39 0.87 15 11 O -0.58 -11.49 9.77 -35.23 -0.34 -11.83 15 12 C -0.10 -1.57 2.33 -89.55 -0.21 -1.78 15 13 H 0.09 1.30 8.14 -51.93 -0.42 0.88 15 14 C -0.11 -1.44 5.48 -25.19 -0.14 -1.57 15 15 C -0.59 -6.36 7.31 38.24 0.28 -6.08 15 16 S 2.37 32.61 6.10 -107.50 -0.66 31.96 15 17 O -0.95 -16.02 18.14 -57.71 -1.05 -17.07 15 18 O -0.95 -15.97 18.15 -57.71 -1.05 -17.02 15 19 C -0.55 -8.39 5.90 37.77 0.22 -8.16 15 20 H 0.27 7.36 8.31 -40.82 -0.34 7.02 15 21 H 0.36 6.11 9.04 45.56 0.41 6.53 15 22 H 0.10 1.14 8.12 -51.93 -0.42 0.72 15 23 H 0.08 1.05 8.11 -51.93 -0.42 0.63 15 24 H 0.13 1.16 8.14 -51.93 -0.42 0.74 15 25 H 0.13 1.21 8.14 -51.93 -0.42 0.79 15 26 H 0.14 2.20 7.88 -51.93 -0.41 1.79 15 27 H 0.14 2.11 8.01 -51.93 -0.42 1.69 15 LS Contribution 238.69 15.07 3.60 3.60 Total: -1.00 -33.85 238.69 -6.16 -40.01 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -2.55 Total: 5.45 kcal Atomic # 6 Polarization: -25.63 SS G_CDS: -0.29 Total: -25.92 kcal Atomic # 7 Polarization: -25.99 SS G_CDS: 0.77 Total: -25.22 kcal Atomic # 8 Polarization: -43.48 SS G_CDS: -2.44 Total: -45.92 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -4.59 Total: 16.05 kcal Atomic # 16 Polarization: 32.61 SS G_CDS: -0.66 Total: 31.96 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -33.85 -6.16 -40.01 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001536213959.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.021 kcal (2) G-P(sol) polarization free energy of solvation -33.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds