Wall clock time and date at job start Mon Mar 30 2020 02:58:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31554 * 1
3 3 Si 1.86799 * 120.00252 * 2 1
4 4 H 1.48503 * 109.46935 * 270.00189 * 3 2 1
5 5 H 1.48489 * 109.47074 * 30.00066 * 3 2 1
6 6 H 1.48503 * 109.47011 * 150.00264 * 3 2 1
7 7 C 1.38656 * 119.99653 * 180.02562 * 2 1 3
8 8 H 1.08003 * 120.00224 * 179.97438 * 7 2 1
9 9 O 1.34833 * 120.00113 * 0.27562 * 7 2 1
10 10 C 1.35762 * 116.99847 * 174.64297 * 9 7 2
11 11 C 1.39008 * 120.04442 * 185.51005 * 10 9 7
12 12 C 1.38218 * 120.31216 * 180.02562 * 11 10 9
13 13 C 1.38059 * 120.17214 * 0.02562 * 12 11 10
14 14 C 1.39514 * 119.76890 * 0.02562 * 13 12 11
15 15 C 1.38729 * 120.04967 * 5.24166 * 10 9 7
16 Xx 1.57037 * 106.90461 * 179.97438 * 14 13 12
17 16 O 1.42009 * 126.47781 * 179.97438 * 16 14 13
18 17 O 1.42100 * 107.04856 * 359.97438 * 16 14 13
19 18 C 1.42654 * 108.79569 * 0.02562 * 18 16 14
20 19 H 0.97000 * 120.00040 * 359.97438 * 1 2 3
21 20 H 1.08001 * 119.84516 * 359.97438 * 11 10 9
22 21 H 1.08006 * 119.91673 * 179.97438 * 12 11 10
23 22 H 1.07996 * 120.16765 * 359.97438 * 15 10 9
24 23 H 0.96696 * 113.99787 * 180.02562 * 17 16 14
25 24 H 1.09005 * 109.49967 * 240.01324 * 19 18 16
26 25 H 1.08996 * 109.47200 * 119.96341 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3155 0.0000 0.0000
3 14 2.2496 1.6177 0.0000
4 1 2.4971 2.0463 -1.4001
5 1 1.4471 2.6526 0.7000
6 1 3.5472 1.4400 0.7000
7 6 2.0087 -1.2008 -0.0005
8 1 3.0888 -1.2009 -0.0010
9 8 1.3345 -2.3685 -0.0067
10 6 2.0698 -3.5041 -0.1198
11 6 1.4352 -4.7342 -0.2481
12 6 2.1784 -5.8940 -0.3631
13 6 3.5578 -5.8382 -0.3508
14 6 4.2002 -4.6066 -0.2212
15 6 3.4555 -3.4381 -0.1131
16 8 6.7826 -3.9292 -0.1388
17 8 5.9060 -6.2969 -0.3849
18 6 4.6166 -6.9034 -0.4540
19 1 -0.4850 0.8400 0.0004
20 1 0.3564 -4.7841 -0.2572
21 1 1.6787 -6.8463 -0.4621
22 1 3.9529 -2.4842 -0.0184
23 1 7.6727 -4.3054 -0.1730
24 1 4.5026 -7.6104 0.3678
25 1 4.5128 -7.4291 -1.4032
There are 37 doubly filled levels
RHF calculation, no. of doubly occupied orbitals= 37
No. of singly occupied orbitals= 1
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000205712948.mol2 26
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:58:00
Heat of formation + Delta-G solvation = 94.133392 kcal
Electronic energy + Delta-G solvation = -12775.220580 eV
Core-core repulsion = 10227.997862 eV
Total energy + Delta-G solvation = -2547.222718 eV
No. of doubly occupied orbitals = 37
and no. of open levels = 1
Molecular weight
(most abundant/longest-lived isotopes) = 209.065 amu
Computer time = 0.60 seconds
Orbital eigenvalues (eV)
-40.63950 -37.78103 -34.93301 -32.72130 -30.39524 -29.23702 -28.76807 -27.55889
-23.97081 -22.37117 -20.87454 -19.50176 -18.31479 -16.17782 -15.84596 -15.51247
-14.81523 -14.13827 -13.88705 -13.39820 -13.29644 -12.56797 -12.42999 -11.78659
-11.52534 -11.47784 -11.41066 -11.24997 -10.59331 -10.55375 -8.97544 -8.75785
-8.09341 -7.14481 -6.90885 -6.90684 -5.95327 -3.39547 -0.07616 1.48345
1.67100 1.84928 2.09395 2.21279 2.63138 2.86263 3.28834 4.02341
4.53010 5.05439 5.11021 5.29306 5.47204 5.65339 5.76170 5.95858
6.17940 6.36037 6.52329 6.75500 6.93075 6.95272 7.27623 7.41580
8.02194 8.89148 10.11988
Molecular weight = 209.06amu
Principal moments of inertia in cm(-1)
A = 0.037704 B = 0.008467 C = 0.006946
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 742.458231 B = 3306.206826 C = 4030.409979
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.634 5.634
2 C -0.061 4.061
3 Si 0.979 3.021
4 H -0.244 1.244
5 H -0.249 1.249
6 H -0.237 1.237
7 C -0.015 4.015
8 H 0.157 0.843
9 O -0.151 6.151
10 C 0.083 3.917
11 C -0.140 4.140
12 C -0.090 4.090
13 C -0.123 4.123
14 C 0.244 3.756
15 C -0.215 4.215
16 O -0.875 6.875
17 O -0.628 6.628
18 C 0.132 3.868
19 H 0.327 0.673
20 H 0.139 0.861
21 H 0.145 0.855
22 H 0.151 0.849
23 H 0.278 0.722
24 H 0.013 0.987
25 H 0.013 0.987
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.966 9.049 0.251 16.643
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.278 5.278
2 C -0.275 4.275
3 Si 0.794 3.206
4 H -0.168 1.168
5 H -0.172 1.172
6 H -0.159 1.159
7 C -0.084 4.084
8 H 0.174 0.826
9 O -0.053 6.053
10 C 0.038 3.962
11 C -0.158 4.158
12 C -0.108 4.108
13 C -0.124 4.124
14 C 0.222 3.778
15 C -0.234 4.234
16 O -0.690 6.690
17 O -0.568 6.568
18 C 0.049 3.951
19 H 0.140 0.860
20 H 0.157 0.843
21 H 0.162 0.838
22 H 0.168 0.832
23 H 0.106 0.894
24 H 0.030 0.970
25 H 0.030 0.970
Dipole moment (debyes) X Y Z Total
from point charges -14.640 9.405 0.310 17.403
hybrid contribution 0.789 0.308 -0.004 0.847
sum -13.851 9.713 0.306 16.920
Atomic orbital electron populations
1.69970 1.07571 1.35027 1.15206 1.27007 0.97539 1.02349 1.00587
0.84958 0.79984 0.73564 0.82046 1.16754 1.17232 1.15902 1.25108
0.97151 0.82407 1.03726 0.82601 1.84218 1.36053 1.12414 1.72655
1.18789 0.87644 0.85957 1.03792 1.20410 1.00674 0.88762 1.05971
1.20755 0.91971 0.98057 1.00019 1.24231 0.93967 0.95624 0.98618
1.31253 0.67517 0.89197 0.89864 1.21385 0.90505 1.01585 1.09878
1.93514 1.20733 1.55221 1.99510 1.95197 1.16501 1.50029 1.95107
1.19754 0.89667 0.90543 0.95138 0.86015 0.84317 0.83787 0.83200
0.89360 0.96988 0.96966
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 46.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.63 -8.72 13.67 55.48 0.76 -7.96 15
2 C -0.06 -0.79 5.49 -17.52 -0.10 -0.88 15
3 Si 0.98 9.51 29.55 -169.99 -5.02 4.48 15
4 H -0.24 -2.43 7.11 56.52 0.40 -2.03 15
5 H -0.25 -2.28 7.11 56.52 0.40 -1.87 15
6 H -0.24 -2.46 7.11 56.52 0.40 -2.06 15
7 C -0.01 -0.22 9.49 30.89 0.29 0.08 15
8 H 0.16 2.12 5.20 -52.48 -0.27 1.85 15
9 O -0.15 -2.53 9.76 0.00 0.00 -2.53 15
10 C 0.08 1.50 6.65 -39.11 -0.26 1.24 15
11 C -0.14 -2.27 9.98 -39.30 -0.39 -2.66 15
12 C -0.09 -1.56 10.03 -39.65 -0.40 -1.96 15
13 C -0.12 -2.86 6.31 -104.29 -0.66 -3.52 15
14 C 0.24 6.45 10.27 -38.83 -0.40 6.05 15
15 C -0.22 -4.58 9.21 -39.12 -0.36 -4.94 15
16 O -0.87 -33.07 18.54 -56.57 -1.05 -34.12 15
17 O -0.63 -21.86 15.05 -56.57 -0.85 -22.71 15
18 C 0.13 3.53 7.74 35.93 0.28 3.81 15
19 H 0.33 3.57 8.31 -40.82 -0.34 3.23 15
20 H 0.14 1.81 8.06 -52.49 -0.42 1.38 15
21 H 0.14 1.94 8.06 -52.48 -0.42 1.52 15
22 H 0.15 2.98 5.64 -52.49 -0.30 2.68 15
23 H 0.28 10.06 9.30 45.56 0.42 10.49 15
24 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 15
25 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 15
LS Contribution 243.92 15.07 3.68 3.68
Total: -1.00 -41.52 243.92 -5.45 -46.98
By element:
Atomic # 1 Polarization: 15.94 SS G_CDS: -0.97 Total: 14.97 kcal
Atomic # 6 Polarization: -0.79 SS G_CDS: -1.99 Total: -2.78 kcal
Atomic # 7 Polarization: -8.72 SS G_CDS: 0.76 Total: -7.96 kcal
Atomic # 8 Polarization: -57.46 SS G_CDS: -1.90 Total: -59.36 kcal
Atomic # 14 Polarization: 9.51 SS G_CDS: -5.02 Total: 4.48 kcal
Total LS contribution 3.68 Total: 3.68 kcal
Total: -41.52 -5.45 -46.98 kcal
The number of atoms in the molecule is 25
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000205712948.mol2 26
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 141.110 kcal
(2) G-P(sol) polarization free energy of solvation -41.523 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.586 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.453 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.976 kcal
(6) G-S(sol) free energy of system = (1) + (5) 94.133 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.60 seconds