Wall clock time and date at job start Mon Mar 30 2020 02:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86799 * 120.00252 * 2 1 4 4 H 1.48503 * 109.46935 * 270.00189 * 3 2 1 5 5 H 1.48489 * 109.47074 * 30.00066 * 3 2 1 6 6 H 1.48503 * 109.47011 * 150.00264 * 3 2 1 7 7 C 1.38656 * 119.99653 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00224 * 179.97438 * 7 2 1 9 9 O 1.34833 * 120.00113 * 0.27562 * 7 2 1 10 10 C 1.35762 * 116.99847 * 174.64297 * 9 7 2 11 11 C 1.39008 * 120.04442 * 185.51005 * 10 9 7 12 12 C 1.38218 * 120.31216 * 180.02562 * 11 10 9 13 13 C 1.38059 * 120.17214 * 0.02562 * 12 11 10 14 14 C 1.39514 * 119.76890 * 0.02562 * 13 12 11 15 15 C 1.38729 * 120.04967 * 5.24166 * 10 9 7 16 Xx 1.57037 * 106.90461 * 179.97438 * 14 13 12 17 16 O 1.42009 * 126.47781 * 179.97438 * 16 14 13 18 17 O 1.42100 * 107.04856 * 359.97438 * 16 14 13 19 18 C 1.42654 * 108.79569 * 0.02562 * 18 16 14 20 19 H 0.97000 * 120.00040 * 359.97438 * 1 2 3 21 20 H 1.08001 * 119.84516 * 359.97438 * 11 10 9 22 21 H 1.08006 * 119.91673 * 179.97438 * 12 11 10 23 22 H 1.07996 * 120.16765 * 359.97438 * 15 10 9 24 23 H 0.96696 * 113.99787 * 180.02562 * 17 16 14 25 24 H 1.09005 * 109.49967 * 240.01324 * 19 18 16 26 25 H 1.08996 * 109.47200 * 119.96341 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0463 -1.4001 5 1 1.4471 2.6526 0.7000 6 1 3.5472 1.4400 0.7000 7 6 2.0087 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3345 -2.3685 -0.0067 10 6 2.0698 -3.5041 -0.1198 11 6 1.4352 -4.7342 -0.2481 12 6 2.1784 -5.8940 -0.3631 13 6 3.5578 -5.8382 -0.3508 14 6 4.2002 -4.6066 -0.2212 15 6 3.4555 -3.4381 -0.1131 16 8 6.7826 -3.9292 -0.1388 17 8 5.9060 -6.2969 -0.3849 18 6 4.6166 -6.9034 -0.4540 19 1 -0.4850 0.8400 0.0004 20 1 0.3564 -4.7841 -0.2572 21 1 1.6787 -6.8463 -0.4621 22 1 3.9529 -2.4842 -0.0184 23 1 7.6727 -4.3054 -0.1730 24 1 4.5026 -7.6104 0.3678 25 1 4.5128 -7.4291 -1.4032 There are 37 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 37 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000205712948.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:00 Heat of formation + Delta-G solvation = 94.133392 kcal Electronic energy + Delta-G solvation = -12775.220580 eV Core-core repulsion = 10227.997862 eV Total energy + Delta-G solvation = -2547.222718 eV No. of doubly occupied orbitals = 37 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 209.065 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.63950 -37.78103 -34.93301 -32.72130 -30.39524 -29.23702 -28.76807 -27.55889 -23.97081 -22.37117 -20.87454 -19.50176 -18.31479 -16.17782 -15.84596 -15.51247 -14.81523 -14.13827 -13.88705 -13.39820 -13.29644 -12.56797 -12.42999 -11.78659 -11.52534 -11.47784 -11.41066 -11.24997 -10.59331 -10.55375 -8.97544 -8.75785 -8.09341 -7.14481 -6.90885 -6.90684 -5.95327 -3.39547 -0.07616 1.48345 1.67100 1.84928 2.09395 2.21279 2.63138 2.86263 3.28834 4.02341 4.53010 5.05439 5.11021 5.29306 5.47204 5.65339 5.76170 5.95858 6.17940 6.36037 6.52329 6.75500 6.93075 6.95272 7.27623 7.41580 8.02194 8.89148 10.11988 Molecular weight = 209.06amu Principal moments of inertia in cm(-1) A = 0.037704 B = 0.008467 C = 0.006946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.458231 B = 3306.206826 C = 4030.409979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.061 4.061 3 Si 0.979 3.021 4 H -0.244 1.244 5 H -0.249 1.249 6 H -0.237 1.237 7 C -0.015 4.015 8 H 0.157 0.843 9 O -0.151 6.151 10 C 0.083 3.917 11 C -0.140 4.140 12 C -0.090 4.090 13 C -0.123 4.123 14 C 0.244 3.756 15 C -0.215 4.215 16 O -0.875 6.875 17 O -0.628 6.628 18 C 0.132 3.868 19 H 0.327 0.673 20 H 0.139 0.861 21 H 0.145 0.855 22 H 0.151 0.849 23 H 0.278 0.722 24 H 0.013 0.987 25 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.966 9.049 0.251 16.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.278 5.278 2 C -0.275 4.275 3 Si 0.794 3.206 4 H -0.168 1.168 5 H -0.172 1.172 6 H -0.159 1.159 7 C -0.084 4.084 8 H 0.174 0.826 9 O -0.053 6.053 10 C 0.038 3.962 11 C -0.158 4.158 12 C -0.108 4.108 13 C -0.124 4.124 14 C 0.222 3.778 15 C -0.234 4.234 16 O -0.690 6.690 17 O -0.568 6.568 18 C 0.049 3.951 19 H 0.140 0.860 20 H 0.157 0.843 21 H 0.162 0.838 22 H 0.168 0.832 23 H 0.106 0.894 24 H 0.030 0.970 25 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges -14.640 9.405 0.310 17.403 hybrid contribution 0.789 0.308 -0.004 0.847 sum -13.851 9.713 0.306 16.920 Atomic orbital electron populations 1.69970 1.07571 1.35027 1.15206 1.27007 0.97539 1.02349 1.00587 0.84958 0.79984 0.73564 0.82046 1.16754 1.17232 1.15902 1.25108 0.97151 0.82407 1.03726 0.82601 1.84218 1.36053 1.12414 1.72655 1.18789 0.87644 0.85957 1.03792 1.20410 1.00674 0.88762 1.05971 1.20755 0.91971 0.98057 1.00019 1.24231 0.93967 0.95624 0.98618 1.31253 0.67517 0.89197 0.89864 1.21385 0.90505 1.01585 1.09878 1.93514 1.20733 1.55221 1.99510 1.95197 1.16501 1.50029 1.95107 1.19754 0.89667 0.90543 0.95138 0.86015 0.84317 0.83787 0.83200 0.89360 0.96988 0.96966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 46. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.63 -8.72 13.67 55.48 0.76 -7.96 15 2 C -0.06 -0.79 5.49 -17.52 -0.10 -0.88 15 3 Si 0.98 9.51 29.55 -169.99 -5.02 4.48 15 4 H -0.24 -2.43 7.11 56.52 0.40 -2.03 15 5 H -0.25 -2.28 7.11 56.52 0.40 -1.87 15 6 H -0.24 -2.46 7.11 56.52 0.40 -2.06 15 7 C -0.01 -0.22 9.49 30.89 0.29 0.08 15 8 H 0.16 2.12 5.20 -52.48 -0.27 1.85 15 9 O -0.15 -2.53 9.76 0.00 0.00 -2.53 15 10 C 0.08 1.50 6.65 -39.11 -0.26 1.24 15 11 C -0.14 -2.27 9.98 -39.30 -0.39 -2.66 15 12 C -0.09 -1.56 10.03 -39.65 -0.40 -1.96 15 13 C -0.12 -2.86 6.31 -104.29 -0.66 -3.52 15 14 C 0.24 6.45 10.27 -38.83 -0.40 6.05 15 15 C -0.22 -4.58 9.21 -39.12 -0.36 -4.94 15 16 O -0.87 -33.07 18.54 -56.57 -1.05 -34.12 15 17 O -0.63 -21.86 15.05 -56.57 -0.85 -22.71 15 18 C 0.13 3.53 7.74 35.93 0.28 3.81 15 19 H 0.33 3.57 8.31 -40.82 -0.34 3.23 15 20 H 0.14 1.81 8.06 -52.49 -0.42 1.38 15 21 H 0.14 1.94 8.06 -52.48 -0.42 1.52 15 22 H 0.15 2.98 5.64 -52.49 -0.30 2.68 15 23 H 0.28 10.06 9.30 45.56 0.42 10.49 15 24 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 15 25 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 15 LS Contribution 243.92 15.07 3.68 3.68 Total: -1.00 -41.52 243.92 -5.45 -46.98 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -0.97 Total: 14.97 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: -1.99 Total: -2.78 kcal Atomic # 7 Polarization: -8.72 SS G_CDS: 0.76 Total: -7.96 kcal Atomic # 8 Polarization: -57.46 SS G_CDS: -1.90 Total: -59.36 kcal Atomic # 14 Polarization: 9.51 SS G_CDS: -5.02 Total: 4.48 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -41.52 -5.45 -46.98 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000205712948.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.110 kcal (2) G-P(sol) polarization free energy of solvation -41.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds