Wall clock time and date at job start Mon Mar 30 2020 02:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86799 * 120.00252 * 2 1 4 4 H 1.48503 * 109.46935 * 270.00189 * 3 2 1 5 5 H 1.48489 * 109.47074 * 30.00066 * 3 2 1 6 6 H 1.48503 * 109.47011 * 150.00264 * 3 2 1 7 7 C 1.38656 * 119.99653 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00224 * 179.97438 * 7 2 1 9 9 O 1.34833 * 120.00113 * 0.27562 * 7 2 1 10 10 C 1.35762 * 116.99847 * 174.64297 * 9 7 2 11 11 C 1.39008 * 120.04442 * 185.51005 * 10 9 7 12 12 C 1.38218 * 120.31216 * 180.02562 * 11 10 9 13 13 C 1.38059 * 120.17214 * 0.02562 * 12 11 10 14 14 C 1.39514 * 119.76890 * 0.02562 * 13 12 11 15 15 C 1.38729 * 120.04967 * 5.24166 * 10 9 7 16 Xx 1.57037 * 106.90461 * 179.97438 * 14 13 12 17 16 O 1.42009 * 126.47781 * 179.97438 * 16 14 13 18 17 O 1.42100 * 107.04856 * 359.97438 * 16 14 13 19 18 C 1.42654 * 108.79569 * 0.02562 * 18 16 14 20 19 H 0.97000 * 120.00040 * 359.97438 * 1 2 3 21 20 H 1.08001 * 119.84516 * 359.97438 * 11 10 9 22 21 H 1.08006 * 119.91673 * 179.97438 * 12 11 10 23 22 H 1.07996 * 120.16765 * 359.97438 * 15 10 9 24 23 H 0.96696 * 113.99787 * 180.02562 * 17 16 14 25 24 H 1.09005 * 109.49967 * 240.01324 * 19 18 16 26 25 H 1.08996 * 109.47200 * 119.96341 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0463 -1.4001 5 1 1.4471 2.6526 0.7000 6 1 3.5472 1.4400 0.7000 7 6 2.0087 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3345 -2.3685 -0.0067 10 6 2.0698 -3.5041 -0.1198 11 6 1.4352 -4.7342 -0.2481 12 6 2.1784 -5.8940 -0.3631 13 6 3.5578 -5.8382 -0.3508 14 6 4.2002 -4.6066 -0.2212 15 6 3.4555 -3.4381 -0.1131 16 8 6.7826 -3.9292 -0.1388 17 8 5.9060 -6.2969 -0.3849 18 6 4.6166 -6.9034 -0.4540 19 1 -0.4850 0.8400 0.0004 20 1 0.3564 -4.7841 -0.2572 21 1 1.6787 -6.8463 -0.4621 22 1 3.9529 -2.4842 -0.0184 23 1 7.6727 -4.3054 -0.1730 24 1 4.5026 -7.6104 0.3678 25 1 4.5128 -7.4291 -1.4032 There are 37 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 37 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000205712948.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:00 Heat of formation + Delta-G solvation = 53.078086 kcal Electronic energy + Delta-G solvation = -12777.000872 eV Core-core repulsion = 10227.997862 eV Total energy + Delta-G solvation = -2549.003010 eV No. of doubly occupied orbitals = 37 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 209.065 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.25155 -39.63321 -36.18766 -34.75536 -32.32513 -31.13187 -30.80863 -29.00757 -25.94665 -24.15858 -22.59795 -21.03263 -19.79625 -17.59595 -17.09952 -16.97892 -16.55902 -15.75137 -15.41745 -15.34405 -14.38038 -14.11852 -13.71035 -13.66338 -13.39199 -13.22806 -12.98902 -12.59399 -12.25609 -11.62713 -10.66331 -10.08519 -9.99865 -9.27493 -9.17913 -9.10873 -8.67246 -4.66054 -2.16444 -0.37311 -0.27559 0.86875 1.12954 1.44179 1.74260 1.88121 2.00502 2.15036 3.01302 3.24137 3.33598 3.55539 3.66185 4.09706 4.17572 4.30536 4.67497 4.74308 4.83785 4.88852 4.97808 5.20292 5.26587 5.90141 6.88708 6.95449 7.73896 Molecular weight = 209.06amu Principal moments of inertia in cm(-1) A = 0.037704 B = 0.008467 C = 0.006946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.458231 B = 3306.206826 C = 4030.409979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.063 4.063 3 Si 1.028 2.972 4 H -0.246 1.246 5 H -0.231 1.231 6 H -0.254 1.254 7 C -0.028 4.028 8 H 0.162 0.838 9 O -0.141 6.141 10 C 0.120 3.880 11 C -0.085 4.085 12 C -0.038 4.038 13 C -0.129 4.129 14 C 0.299 3.701 15 C -0.220 4.220 16 O -1.121 7.121 17 O -0.767 6.767 18 C 0.108 3.892 19 H 0.346 0.654 20 H 0.213 0.787 21 H 0.220 0.780 22 H 0.167 0.833 23 H 0.232 0.768 24 H 0.029 0.971 25 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.904 10.227 0.209 26.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.278 5.278 2 C -0.276 4.276 3 Si 0.840 3.160 4 H -0.169 1.169 5 H -0.153 1.153 6 H -0.178 1.178 7 C -0.095 4.095 8 H 0.179 0.821 9 O -0.043 6.043 10 C 0.074 3.926 11 C -0.102 4.102 12 C -0.055 4.055 13 C -0.130 4.130 14 C 0.286 3.714 15 C -0.238 4.238 16 O -0.943 6.943 17 O -0.709 6.709 18 C 0.026 3.974 19 H 0.162 0.838 20 H 0.230 0.770 21 H 0.237 0.763 22 H 0.184 0.816 23 H 0.058 0.942 24 H 0.047 0.953 25 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -24.753 10.563 0.265 26.913 hybrid contribution 2.543 0.242 0.016 2.555 sum -22.209 10.805 0.282 24.700 Atomic orbital electron populations 1.69911 1.08128 1.37285 1.12483 1.27594 0.97875 1.02966 0.99189 0.84336 0.78538 0.71294 0.81797 1.16919 1.15287 1.17775 1.25622 0.97864 0.82263 1.03788 0.82088 1.84329 1.34710 1.12191 1.73033 1.18678 0.83726 0.88281 1.01909 1.21332 1.04043 0.86064 0.98761 1.21349 0.86493 1.01993 0.95640 1.23940 0.96531 0.91979 1.00532 1.29086 0.42566 0.94947 1.04774 1.21510 0.92091 0.99925 1.10265 1.93486 1.23444 1.77632 1.99769 1.95311 1.22047 1.58052 1.95510 1.20027 0.88664 0.91869 0.96825 0.83843 0.76994 0.76331 0.81645 0.94241 0.95329 0.95303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.63 -13.03 13.67 21.61 0.30 -12.73 15 2 C -0.06 -1.24 5.49 84.83 0.47 -0.78 15 3 Si 1.03 15.25 29.55 68.60 2.03 17.28 15 4 H -0.25 -3.84 7.11 99.48 0.71 -3.13 15 5 H -0.23 -2.87 7.11 99.48 0.71 -2.16 15 6 H -0.25 -4.62 7.11 99.48 0.71 -3.91 15 7 C -0.03 -0.65 9.49 67.92 0.64 -0.01 15 8 H 0.16 3.74 5.20 -2.91 -0.02 3.72 15 9 O -0.14 -3.47 9.76 -22.91 -0.22 -3.70 15 10 C 0.12 3.26 6.65 22.57 0.15 3.41 15 11 C -0.08 -1.67 9.98 22.45 0.22 -1.44 15 12 C -0.04 -0.90 10.03 22.22 0.22 -0.68 15 13 C -0.13 -5.50 6.31 -19.65 -0.12 -5.62 15 14 C 0.30 15.95 10.27 22.76 0.23 16.18 15 15 C -0.22 -8.59 9.21 22.57 0.21 -8.39 15 16 O -1.12 -103.94 18.54 -128.58 -2.38 -106.32 15 17 O -0.77 -60.55 15.05 -128.58 -1.94 -62.49 15 18 C 0.11 5.95 7.74 71.19 0.55 6.50 15 19 H 0.35 5.23 8.31 -92.71 -0.77 4.46 15 20 H 0.21 1.95 8.06 -2.91 -0.02 1.92 15 21 H 0.22 2.79 8.06 -2.91 -0.02 2.77 15 22 H 0.17 6.37 5.64 -2.91 -0.02 6.35 15 23 H 0.23 21.71 9.30 -74.06 -0.69 21.03 15 24 H 0.03 1.46 8.14 -2.38 -0.02 1.44 15 25 H 0.03 1.47 8.14 -2.39 -0.02 1.45 15 Total: -1.00 -125.73 243.92 0.90 -124.83 By element: Atomic # 1 Polarization: 33.40 SS G_CDS: 0.54 Total: 33.94 kcal Atomic # 6 Polarization: 6.61 SS G_CDS: 2.58 Total: 9.19 kcal Atomic # 7 Polarization: -13.03 SS G_CDS: 0.30 Total: -12.73 kcal Atomic # 8 Polarization: -167.96 SS G_CDS: -4.54 Total: -172.51 kcal Atomic # 14 Polarization: 15.25 SS G_CDS: 2.03 Total: 17.28 kcal Total: -125.73 0.90 -124.83 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000205712948.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.907 kcal (2) G-P(sol) polarization free energy of solvation -125.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -124.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds