Wall clock time and date at job start Mon Mar 30 2020 03:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30648 * 1 3 3 Si 1.86797 * 120.00407 * 2 1 4 4 H 1.48495 * 109.47418 * 269.99867 * 3 2 1 5 5 H 1.48501 * 109.47014 * 30.00215 * 3 2 1 6 6 H 1.48508 * 109.46970 * 150.00100 * 3 2 1 7 7 C 1.40112 * 119.99640 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00364 * 179.97438 * 7 2 1 9 9 C 1.46220 * 120.00052 * 0.02562 * 7 2 1 10 10 O 1.21602 * 119.99777 * 359.97438 * 9 7 2 11 11 O 1.34990 * 120.00175 * 179.97438 * 9 7 2 12 12 C 1.42896 * 117.00289 * 179.97438 * 11 9 7 13 13 C 1.52995 * 109.47376 * 180.02562 * 12 11 9 14 14 C 1.50707 * 109.47301 * 179.97438 * 13 12 11 15 15 C 1.38238 * 119.99792 * 90.00016 * 14 13 12 16 16 C 1.38235 * 119.99712 * 179.97438 * 15 14 13 17 17 C 1.38234 * 120.00220 * 359.97124 * 16 15 14 18 18 C 1.38233 * 120.00037 * 0.28719 * 17 16 15 19 19 C 1.38234 * 120.00179 * 269.97953 * 14 13 12 20 20 H 0.97001 * 119.99457 * 359.97438 * 1 2 3 21 21 H 1.08995 * 109.47430 * 59.99747 * 12 11 9 22 22 H 1.09004 * 109.46934 * 299.99941 * 12 11 9 23 23 H 1.09005 * 109.47610 * 60.00060 * 13 12 11 24 24 H 1.09000 * 109.47256 * 299.99402 * 13 12 11 25 25 H 1.08005 * 120.00068 * 359.97438 * 15 14 13 26 26 H 1.07999 * 119.99770 * 179.97438 * 16 15 14 27 27 H 1.08002 * 119.99744 * 180.02562 * 17 16 15 28 28 H 1.07998 * 120.00395 * 179.72811 * 18 17 16 29 29 H 1.07999 * 119.99968 * 359.97438 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2406 1.6176 0.0000 4 1 2.4882 2.0463 -1.4000 5 1 1.4381 2.6526 0.7001 6 1 3.5382 1.4399 0.7001 7 6 2.0070 -1.2134 -0.0005 8 1 3.0870 -1.2136 -0.0010 9 6 1.2758 -2.4797 -0.0017 10 8 0.0598 -2.4796 -0.0017 11 8 1.9506 -3.6488 -0.0027 12 6 1.1723 -4.8472 -0.0032 13 6 2.1042 -6.0606 -0.0038 14 6 1.2834 -7.3245 -0.0036 15 6 0.9065 -7.9040 -1.2008 16 6 0.1540 -9.0635 -1.2007 17 6 -0.2211 -9.6440 -0.0035 18 6 0.1512 -9.0617 1.1936 19 6 0.9077 -7.9046 1.1935 20 1 -0.4849 0.8401 0.0004 21 1 0.5431 -4.8715 -0.8929 22 1 0.5439 -4.8726 0.8870 23 1 2.7331 -6.0363 0.8863 24 1 2.7330 -6.0355 -0.8938 25 1 1.1999 -7.4507 -2.1362 26 1 -0.1408 -9.5160 -2.1360 27 1 -0.8087 -10.5502 -0.0035 28 1 -0.1455 -9.5127 2.1289 29 1 1.2028 -7.4523 2.1288 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034437590.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:41 Heat of formation + Delta-G solvation = -103.622528 kcal Electronic energy + Delta-G solvation = -13795.353456 eV Core-core repulsion = 11260.818091 eV Total energy + Delta-G solvation = -2534.535365 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.57013 -39.95553 -36.94535 -34.84009 -34.32133 -31.79119 -30.04219 -28.63218 -24.87495 -23.47753 -22.58771 -21.84221 -19.35798 -18.08431 -17.53170 -17.14538 -16.85608 -15.95937 -15.90160 -15.83100 -14.51349 -14.39146 -14.13445 -13.99484 -13.64378 -13.28406 -12.91145 -12.89485 -12.53216 -12.29238 -12.03990 -11.95112 -11.86104 -11.16132 -11.00484 -10.44068 -9.83466 -9.66487 -8.56163 -7.18499 0.38805 0.48624 1.37999 1.38397 1.58485 2.14517 2.15199 2.65381 2.97588 3.26243 3.84235 3.92277 4.13909 4.16384 4.25761 4.29772 4.40285 4.57908 4.63067 4.87990 4.90669 5.13887 5.14072 5.16672 5.54767 5.59958 5.64816 5.70520 6.00430 6.11087 6.54370 6.60639 8.06400 8.41632 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.074721 B = 0.004914 C = 0.004858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 374.636902 B = 5697.006032 C = 5761.853699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.024 3.976 3 Si 1.019 2.981 4 H -0.254 1.254 5 H -0.264 1.264 6 H -0.246 1.246 7 C -0.538 4.538 8 H 0.097 0.903 9 C 0.460 3.540 10 O -0.606 6.606 11 O -0.389 6.389 12 C 0.081 3.919 13 C -0.064 4.064 14 C -0.098 4.098 15 C -0.130 4.130 16 C -0.124 4.124 17 C -0.126 4.126 18 C -0.124 4.124 19 C -0.130 4.130 20 H 0.286 0.714 21 H 0.034 0.966 22 H 0.034 0.966 23 H 0.087 0.913 24 H 0.087 0.913 25 H 0.126 0.874 26 H 0.145 0.855 27 H 0.150 0.850 28 H 0.145 0.855 29 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.184 -13.588 -0.011 13.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.192 4.192 3 Si 0.836 3.164 4 H -0.179 1.179 5 H -0.188 1.188 6 H -0.169 1.169 7 C -0.570 4.570 8 H 0.116 0.884 9 C 0.322 3.678 10 O -0.505 6.505 11 O -0.309 6.309 12 C 0.006 3.994 13 C -0.101 4.101 14 C -0.098 4.098 15 C -0.148 4.148 16 C -0.142 4.142 17 C -0.144 4.144 18 C -0.142 4.142 19 C -0.148 4.148 20 H 0.096 0.904 21 H 0.052 0.948 22 H 0.052 0.948 23 H 0.105 0.895 24 H 0.105 0.895 25 H 0.144 0.856 26 H 0.163 0.837 27 H 0.167 0.833 28 H 0.163 0.837 29 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 2.652 -13.582 -0.007 13.839 hybrid contribution -0.238 0.591 -0.008 0.637 sum 2.414 -12.992 -0.016 13.214 Atomic orbital electron populations 1.70143 1.09778 1.30355 1.33491 1.27293 0.95879 1.05318 0.90723 0.84710 0.78573 0.73101 0.80052 1.17857 1.18774 1.16918 1.21053 0.95330 0.87046 1.53554 0.88443 1.21722 0.86475 0.83543 0.76101 1.90610 1.16550 1.87374 1.55974 1.86155 1.42254 1.15093 1.87447 1.22223 0.94012 0.83664 0.99531 1.20423 0.96511 0.88494 1.04698 1.19809 0.99551 0.95890 0.94524 1.21328 0.99051 0.96813 0.97584 1.21470 0.97713 0.95437 0.99604 1.21543 0.99886 1.00832 0.92131 1.21471 0.97691 0.95458 0.99607 1.21327 0.99029 0.96840 0.97582 0.90370 0.94759 0.94772 0.89482 0.89474 0.85558 0.83673 0.83265 0.83675 0.85561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -48.75 11.83 21.85 0.26 -48.49 15 2 C 0.02 1.34 5.50 85.32 0.47 1.81 15 3 Si 1.02 39.87 29.56 68.60 2.03 41.90 15 4 H -0.25 -9.35 7.11 99.48 0.71 -8.64 15 5 H -0.26 -9.68 7.11 99.48 0.71 -8.97 15 6 H -0.25 -8.99 7.11 99.48 0.71 -8.28 15 7 C -0.54 -31.90 9.67 24.80 0.24 -31.66 15 8 H 0.10 5.27 7.85 -2.91 -0.02 5.25 15 9 C 0.46 28.93 7.88 69.90 0.55 29.48 15 10 O -0.61 -41.94 14.80 19.50 0.29 -41.65 15 11 O -0.39 -21.03 10.13 -59.08 -0.60 -21.63 15 12 C 0.08 3.66 5.36 71.98 0.39 4.04 15 13 C -0.06 -2.13 5.71 29.85 0.17 -1.96 15 14 C -0.10 -2.89 5.13 -19.86 -0.10 -2.99 15 15 C -0.13 -3.45 9.70 22.27 0.22 -3.24 15 16 C -0.12 -2.71 10.05 22.27 0.22 -2.49 15 17 C -0.13 -2.51 10.05 22.27 0.22 -2.29 15 18 C -0.12 -2.71 10.05 22.27 0.22 -2.49 15 19 C -0.13 -3.45 9.70 22.27 0.22 -3.24 15 20 H 0.29 15.24 8.29 -92.71 -0.77 14.47 15 21 H 0.03 1.61 8.13 -2.39 -0.02 1.59 15 22 H 0.03 1.61 8.13 -2.38 -0.02 1.59 15 23 H 0.09 2.71 8.09 -2.38 -0.02 2.69 15 24 H 0.09 2.71 8.09 -2.39 -0.02 2.69 15 25 H 0.13 3.13 8.06 -2.91 -0.02 3.11 15 26 H 0.15 2.35 8.06 -2.91 -0.02 2.32 15 27 H 0.15 2.02 8.06 -2.91 -0.02 1.99 15 28 H 0.15 2.35 8.06 -2.91 -0.02 2.32 15 29 H 0.13 3.13 8.06 -2.91 -0.02 3.11 15 Total: -1.00 -75.58 265.28 5.93 -69.65 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: 1.13 Total: 15.24 kcal Atomic # 6 Polarization: -17.84 SS G_CDS: 2.82 Total: -15.02 kcal Atomic # 7 Polarization: -48.75 SS G_CDS: 0.26 Total: -48.49 kcal Atomic # 8 Polarization: -62.97 SS G_CDS: -0.31 Total: -63.28 kcal Atomic # 14 Polarization: 39.87 SS G_CDS: 2.03 Total: 41.90 kcal Total: -75.58 5.93 -69.65 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034437590.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.976 kcal (2) G-P(sol) polarization free energy of solvation -75.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds