Wall clock time and date at job start Mon Mar 30 2020 03:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86799 * 120.00063 * 2 1 4 4 H 1.48506 * 109.47006 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47134 * 299.99771 * 3 2 1 6 6 H 1.48496 * 109.47185 * 59.99937 * 3 2 1 7 7 C 1.37877 * 119.99600 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99663 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00156 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46964 * 179.97438 * 9 7 2 11 11 C 1.50695 * 109.46770 * 180.02562 * 10 9 7 12 12 O 1.21299 * 120.00662 * 0.02562 * 11 10 9 13 13 C 1.46785 * 119.99705 * 180.02562 * 11 10 9 14 14 C 1.40021 * 120.22544 * 0.27777 * 13 11 10 15 15 C 1.37679 * 119.88276 * 180.25494 * 14 13 11 16 16 C 1.38634 * 120.33628 * 359.72052 * 15 14 13 17 17 C 1.38057 * 120.45368 * 0.02562 * 16 15 14 18 18 C 1.38683 * 120.11072 * 359.97438 * 17 16 15 19 19 O 1.35601 * 120.16706 * 179.97438 * 18 17 16 20 20 H 0.97000 * 119.99730 * 0.02562 * 1 2 3 21 21 H 1.09003 * 109.46843 * 60.00066 * 9 7 2 22 22 H 1.08994 * 109.47144 * 299.99940 * 9 7 2 23 23 H 1.08998 * 109.46951 * 59.99708 * 10 9 7 24 24 H 1.09004 * 109.47253 * 299.99931 * 10 9 7 25 25 H 1.08002 * 120.05870 * 359.97438 * 14 13 11 26 26 H 1.07992 * 119.83260 * 179.74211 * 15 14 13 27 27 H 1.07990 * 119.77101 * 180.02562 * 16 15 14 28 28 H 1.07998 * 119.93801 * 179.97438 * 17 16 15 29 29 H 0.96700 * 114.00348 * 89.99777 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7093 1.3463 -0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4916 -4.9671 -0.0001 12 8 0.2786 -4.9672 -0.0010 13 6 2.2255 -6.2384 0.0003 14 6 3.6257 -6.2439 0.0072 15 6 4.3070 -7.4403 0.0023 16 6 3.6137 -8.6408 -0.0036 17 6 2.2331 -8.6516 -0.0052 18 6 1.5281 -7.4574 -0.0003 19 8 0.1721 -7.4666 -0.0023 20 1 -0.4850 0.8401 -0.0004 21 1 0.6247 -2.5571 -0.8897 22 1 0.6240 -2.5567 0.8902 23 1 2.8719 -3.6044 0.8905 24 1 2.8719 -3.6044 -0.8895 25 1 4.1704 -5.3113 0.0118 26 1 5.3869 -7.4436 0.0034 27 1 4.1572 -9.5740 -0.0071 28 1 1.7015 -9.5917 -0.0102 29 1 -0.2226 -7.4738 0.8805 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035307545.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:08 Heat of formation + Delta-G solvation = -66.509839 kcal Electronic energy + Delta-G solvation = -14031.677347 eV Core-core repulsion = 11498.751309 eV Total energy + Delta-G solvation = -2532.926038 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.09541 -37.95433 -36.62276 -33.48074 -31.80316 -30.51616 -29.78187 -26.02162 -23.75015 -22.54460 -21.24655 -19.04737 -18.23854 -16.82771 -16.00017 -15.72377 -15.33696 -14.60322 -14.46170 -14.22096 -13.92793 -13.54019 -12.50744 -12.22175 -12.17525 -11.98313 -11.73717 -11.06708 -10.94582 -10.66721 -10.57744 -9.96215 -9.68571 -9.13551 -9.03292 -8.78209 -8.69687 -8.32944 -5.96544 -4.00732 0.76382 1.21823 2.82080 3.32400 3.39492 3.42826 3.73599 4.22072 4.41317 4.55974 4.79597 4.88487 5.15219 5.37169 5.38496 5.64347 5.77654 5.94378 6.18184 6.22171 6.24342 6.33037 6.45127 6.69436 6.99823 7.72788 7.72904 7.83913 8.05072 8.15576 8.43145 9.07346 9.62983 11.14514 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.051298 B = 0.005958 C = 0.005361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.695231 B = 4698.533194 C = 5221.238147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.525 4.525 8 H 0.057 0.943 9 C 0.031 3.969 10 C -0.155 4.155 11 C 0.383 3.617 12 O -0.434 6.434 13 C -0.188 4.188 14 C -0.058 4.058 15 C -0.146 4.146 16 C -0.083 4.083 17 C -0.165 4.165 18 C 0.158 3.842 19 O -0.481 6.481 20 H 0.260 0.740 21 H 0.022 0.978 22 H 0.022 0.978 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.140 0.860 26 H 0.128 0.872 27 H 0.127 0.873 28 H 0.130 0.870 29 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.067 -16.366 1.691 18.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.564 4.564 8 H 0.075 0.925 9 C -0.006 4.006 10 C -0.193 4.193 11 C 0.259 3.741 12 O -0.307 6.307 13 C -0.190 4.190 14 C -0.076 4.076 15 C -0.164 4.164 16 C -0.101 4.101 17 C -0.184 4.184 18 C 0.112 3.888 19 O -0.292 6.292 20 H 0.070 0.930 21 H 0.041 0.959 22 H 0.040 0.960 23 H 0.102 0.898 24 H 0.102 0.898 25 H 0.157 0.843 26 H 0.146 0.854 27 H 0.145 0.855 28 H 0.148 0.852 29 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 7.309 -16.237 1.087 17.840 hybrid contribution 0.484 0.853 0.462 1.085 sum 7.793 -15.384 1.550 17.315 Atomic orbital electron populations 1.70009 1.06062 1.26472 1.50378 1.25043 0.94839 0.99279 0.95324 0.86532 0.80017 0.83821 0.77582 1.19733 1.21017 1.21021 1.21263 0.92984 0.90991 1.51124 0.92514 1.18950 0.93362 0.89952 0.98382 1.22148 1.01122 0.93465 1.02525 1.22849 0.89384 0.89893 0.71987 1.90521 1.16078 1.89728 1.34399 1.21450 0.95052 0.95575 1.06922 1.21518 0.92592 0.99080 0.94402 1.21138 1.00303 0.92232 1.02762 1.21194 0.93616 0.98356 0.96980 1.21419 0.94702 0.97697 1.04549 1.18814 0.83601 0.91231 0.95153 1.84724 1.14916 1.96132 1.33426 0.93012 0.95946 0.95990 0.89796 0.89799 0.84267 0.85358 0.85546 0.85208 0.74792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.57 13.29 55.43 0.74 -26.83 15 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 15 3 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 15 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 15 5 H -0.28 -6.87 7.11 56.52 0.40 -6.47 15 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 15 7 C -0.53 -15.00 9.11 -34.44 -0.31 -15.31 15 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 15 9 C 0.03 0.83 4.26 -27.88 -0.12 0.71 15 10 C -0.16 -3.20 4.25 -27.88 -0.12 -3.31 15 11 C 0.38 7.55 7.11 -30.86 -0.22 7.33 15 12 O -0.43 -10.00 14.79 -16.37 -0.24 -10.24 15 13 C -0.19 -2.98 5.88 -104.94 -0.62 -3.60 15 14 C -0.06 -0.74 9.46 -39.12 -0.37 -1.11 15 15 C -0.15 -1.51 10.02 -39.64 -0.40 -1.91 15 16 C -0.08 -0.82 10.03 -39.50 -0.40 -1.21 15 17 C -0.17 -1.89 9.97 -39.48 -0.39 -2.28 15 18 C 0.16 2.31 6.73 -38.59 -0.26 2.05 15 19 O -0.48 -7.32 11.58 -40.41 -0.47 -7.78 15 20 H 0.26 7.54 8.31 -40.82 -0.34 7.20 15 21 H 0.02 0.66 8.10 -51.93 -0.42 0.24 15 22 H 0.02 0.64 8.10 -51.93 -0.42 0.22 15 23 H 0.08 1.56 8.08 -51.93 -0.42 1.14 15 24 H 0.08 1.59 8.09 -51.93 -0.42 1.17 15 25 H 0.14 1.59 7.05 -52.49 -0.37 1.22 15 26 H 0.13 0.97 8.06 -52.49 -0.42 0.55 15 27 H 0.13 0.86 8.06 -52.49 -0.42 0.43 15 28 H 0.13 1.21 8.06 -52.49 -0.42 0.79 15 29 H 0.39 4.39 9.06 45.56 0.41 4.80 15 LS Contribution 261.50 15.07 3.94 3.94 Total: -1.00 -34.51 261.50 -6.80 -41.31 By element: Atomic # 1 Polarization: 2.40 SS G_CDS: -2.45 Total: -0.04 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: -3.30 Total: -17.09 kcal Atomic # 7 Polarization: -27.57 SS G_CDS: 0.74 Total: -26.83 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -0.71 Total: -18.03 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -34.51 -6.80 -41.31 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035307545.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.196 kcal (2) G-P(sol) polarization free energy of solvation -34.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds