Wall clock time and date at job start Mon Mar 30 2020 03:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86795 * 120.00260 * 2 1 4 4 H 1.48498 * 109.47181 * 269.99705 * 3 2 1 5 5 H 1.48498 * 109.47260 * 30.00086 * 3 2 1 6 6 H 1.48502 * 109.47130 * 149.99905 * 3 2 1 7 7 C 1.38659 * 119.99705 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99848 * 0.02562 * 7 2 1 9 9 O 1.34828 * 120.00122 * 180.02562 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94542 * 9 7 2 11 11 C 1.38880 * 120.06526 * 185.25998 * 10 9 7 12 12 C 1.38102 * 119.92551 * 179.72299 * 11 10 9 13 13 C 1.38301 * 120.07047 * 0.57451 * 12 11 10 14 14 C 1.50707 * 119.93198 * 179.70343 * 13 12 11 15 15 C 1.53000 * 109.46853 * 269.97814 * 14 13 12 16 16 C 1.50698 * 109.47212 * 180.02562 * 15 14 13 17 17 O 1.20754 * 120.00382 * 124.99837 * 16 15 14 18 18 C 1.38302 * 120.13771 * 359.68122 * 13 12 11 19 19 C 1.38101 * 120.06877 * 0.04228 * 18 13 12 20 20 H 0.96997 * 119.99350 * 359.97438 * 1 2 3 21 21 H 1.07996 * 120.04097 * 0.02562 * 11 10 9 22 22 H 1.07997 * 119.96688 * 180.27743 * 12 11 10 23 23 H 1.09002 * 109.47040 * 29.97463 * 14 13 12 24 24 H 1.08995 * 109.46954 * 149.97923 * 14 13 12 25 25 H 1.09007 * 109.47431 * 299.99803 * 15 14 13 26 26 H 1.08997 * 109.47534 * 59.99577 * 15 14 13 27 27 H 1.08008 * 119.99632 * 304.99991 * 16 15 14 28 28 H 1.07999 * 119.96521 * 180.02562 * 18 13 12 29 29 H 1.07997 * 120.03156 * 179.97438 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 2.4972 2.0463 -1.4000 5 1 1.4472 2.6526 0.7000 6 1 3.5472 1.4400 0.7001 7 6 2.0088 -1.2009 0.0005 8 1 1.4687 -2.1362 0.0005 9 8 3.3571 -1.2010 0.0011 10 6 3.9733 -2.4058 0.1081 11 6 5.3555 -2.4724 0.2252 12 6 5.9789 -3.6994 0.3397 13 6 5.2293 -4.8615 0.3260 14 6 5.9134 -6.1991 0.4444 15 6 6.2690 -6.7154 -0.9513 16 6 6.9525 -8.0532 -0.8330 17 8 6.5182 -9.0082 -1.4309 18 6 3.8530 -4.7987 0.2042 19 6 3.2232 -3.5745 0.0950 20 1 -0.4849 0.8401 0.0004 21 1 5.9419 -1.5655 0.2316 22 1 7.0534 -3.7517 0.4353 23 1 6.8234 -6.0908 1.0345 24 1 5.2448 -6.9070 0.9342 25 1 5.3589 -6.8238 -1.5415 26 1 6.9375 -6.0075 -1.4412 27 1 7.8309 -8.1579 -0.2132 28 1 3.2703 -5.7079 0.1942 29 1 2.1486 -3.5262 -0.0004 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036459254.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:43 Heat of formation + Delta-G solvation = -48.622695 kcal Electronic energy + Delta-G solvation = -13775.487699 eV Core-core repulsion = 11243.337306 eV Total energy + Delta-G solvation = -2532.150393 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.43105 -39.02499 -37.03680 -33.55301 -32.33779 -30.30843 -28.91137 -25.65969 -24.03883 -22.14592 -21.27090 -20.31951 -17.93129 -17.31532 -16.41300 -15.49161 -15.08437 -14.74271 -14.22836 -14.07958 -13.83751 -13.48735 -13.27250 -12.69921 -12.36938 -12.27705 -12.20197 -11.21756 -11.07955 -10.97537 -10.75370 -10.64134 -10.18415 -9.71342 -9.42229 -8.89333 -8.32018 -7.34989 -6.44954 -4.11820 1.81994 2.07235 2.17514 3.20197 3.22893 3.37249 4.18939 4.20541 4.40306 4.80979 4.88385 5.05615 5.11087 5.26668 5.47293 5.53719 5.68156 5.72376 5.84739 6.08386 6.14474 6.31246 6.52587 6.74227 6.99097 7.18599 7.24366 7.26464 7.56705 7.76166 8.00061 8.90053 9.52000 10.62619 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.065799 B = 0.005323 C = 0.005061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 425.438493 B = 5258.828204 C = 5531.323398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.063 3.937 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.391 4.391 8 H 0.107 0.893 9 O -0.217 6.217 10 C 0.159 3.841 11 C -0.192 4.192 12 C -0.072 4.072 13 C -0.179 4.179 14 C -0.054 4.054 15 C -0.187 4.187 16 C 0.346 3.654 17 O -0.471 6.471 18 C -0.068 4.068 19 C -0.220 4.220 20 H 0.280 0.720 21 H 0.117 0.883 22 H 0.113 0.887 23 H 0.070 0.930 24 H 0.065 0.935 25 H 0.086 0.914 26 H 0.098 0.902 27 H 0.092 0.908 28 H 0.109 0.891 29 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.247 -8.298 1.098 14.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.466 4.466 8 H 0.124 0.876 9 O -0.122 6.122 10 C 0.106 3.894 11 C -0.211 4.211 12 C -0.090 4.090 13 C -0.180 4.180 14 C -0.091 4.091 15 C -0.225 4.225 16 C 0.202 3.798 17 O -0.342 6.342 18 C -0.086 4.086 19 C -0.239 4.239 20 H 0.090 0.910 21 H 0.135 0.865 22 H 0.131 0.869 23 H 0.089 0.911 24 H 0.084 0.916 25 H 0.104 0.896 26 H 0.116 0.884 27 H 0.108 0.892 28 H 0.127 0.873 29 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 11.872 -8.442 0.750 14.587 hybrid contribution 0.058 0.874 0.014 0.876 sum 11.931 -7.568 0.764 14.149 Atomic orbital electron populations 1.69648 1.05581 1.28540 1.47870 1.24481 0.95041 0.98871 0.95636 0.86167 0.80303 0.81383 0.78968 1.19869 1.20780 1.18356 1.20776 0.76876 0.96655 1.52295 0.87615 1.83568 1.22640 1.25788 1.80201 1.19150 0.91749 0.85509 0.92950 1.20209 0.91963 0.97917 1.11023 1.20494 0.98307 0.91310 0.98909 1.19221 0.93623 0.93748 1.11403 1.20146 1.00121 0.94547 0.94327 1.22564 1.02904 0.96829 1.00173 1.26170 0.86607 0.88765 0.78222 1.90398 1.63212 1.41847 1.38775 1.20685 0.93591 0.96742 0.97599 1.21286 1.01186 0.91878 1.09555 0.91007 0.86532 0.86858 0.91140 0.91590 0.89560 0.88352 0.89199 0.87292 0.84946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.23 13.96 55.48 0.77 -24.46 15 2 C 0.06 1.76 5.49 -17.51 -0.10 1.66 15 3 Si 0.91 21.46 28.62 -169.99 -4.86 16.60 15 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 15 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 15 6 H -0.26 -6.15 7.11 56.52 0.40 -5.75 15 7 C -0.39 -10.91 9.95 30.89 0.31 -10.60 15 8 H 0.11 3.02 5.44 -52.48 -0.29 2.73 15 9 O -0.22 -5.65 8.59 0.05 0.00 -5.65 15 10 C 0.16 3.58 6.65 -39.11 -0.26 3.32 15 11 C -0.19 -3.64 9.99 -39.39 -0.39 -4.03 15 12 C -0.07 -1.12 9.69 -39.61 -0.38 -1.50 15 13 C -0.18 -2.70 5.14 -104.57 -0.54 -3.24 15 14 C -0.05 -0.58 5.32 -27.88 -0.15 -0.73 15 15 C -0.19 -1.87 5.77 -27.88 -0.16 -2.03 15 16 C 0.35 3.23 11.19 36.00 0.40 3.63 15 17 O -0.47 -6.51 17.90 6.00 0.11 -6.40 15 18 C -0.07 -1.18 9.69 -39.61 -0.38 -1.56 15 19 C -0.22 -4.64 9.17 -39.40 -0.36 -5.00 15 20 H 0.28 7.41 8.31 -40.82 -0.34 7.07 15 21 H 0.12 2.06 8.06 -52.49 -0.42 1.64 15 22 H 0.11 1.37 8.06 -52.49 -0.42 0.95 15 23 H 0.07 0.61 8.08 -51.93 -0.42 0.19 15 24 H 0.07 0.70 8.08 -51.93 -0.42 0.28 15 25 H 0.09 1.02 8.12 -51.92 -0.42 0.60 15 26 H 0.10 0.89 8.14 -51.93 -0.42 0.47 15 27 H 0.09 0.51 8.06 -52.48 -0.42 0.08 15 28 H 0.11 1.65 8.06 -52.49 -0.42 1.23 15 29 H 0.13 2.96 5.64 -52.49 -0.30 2.67 15 LS Contribution 262.49 15.07 3.96 3.96 Total: -1.00 -30.74 262.49 -5.13 -35.88 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: -3.09 Total: 0.17 kcal Atomic # 6 Polarization: -18.07 SS G_CDS: -2.02 Total: -20.08 kcal Atomic # 7 Polarization: -25.23 SS G_CDS: 0.77 Total: -24.46 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: 0.11 Total: -12.05 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.86 Total: 16.60 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -30.74 -5.13 -35.88 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036459254.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.746 kcal (2) G-P(sol) polarization free energy of solvation -30.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds