Wall clock time and date at job start Mon Mar 30 2020 03:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86795 * 120.00260 * 2 1 4 4 H 1.48498 * 109.47181 * 269.99705 * 3 2 1 5 5 H 1.48498 * 109.47260 * 30.00086 * 3 2 1 6 6 H 1.48502 * 109.47130 * 149.99905 * 3 2 1 7 7 C 1.38659 * 119.99705 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99848 * 0.02562 * 7 2 1 9 9 O 1.34828 * 120.00122 * 180.02562 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94542 * 9 7 2 11 11 C 1.38880 * 120.06526 * 185.25998 * 10 9 7 12 12 C 1.38102 * 119.92551 * 179.72299 * 11 10 9 13 13 C 1.38301 * 120.07047 * 0.57451 * 12 11 10 14 14 C 1.50707 * 119.93198 * 179.70343 * 13 12 11 15 15 C 1.53000 * 109.46853 * 269.97814 * 14 13 12 16 16 C 1.50698 * 109.47212 * 180.02562 * 15 14 13 17 17 O 1.20754 * 120.00382 * 124.99837 * 16 15 14 18 18 C 1.38302 * 120.13771 * 359.68122 * 13 12 11 19 19 C 1.38101 * 120.06877 * 0.04228 * 18 13 12 20 20 H 0.96997 * 119.99350 * 359.97438 * 1 2 3 21 21 H 1.07996 * 120.04097 * 0.02562 * 11 10 9 22 22 H 1.07997 * 119.96688 * 180.27743 * 12 11 10 23 23 H 1.09002 * 109.47040 * 29.97463 * 14 13 12 24 24 H 1.08995 * 109.46954 * 149.97923 * 14 13 12 25 25 H 1.09007 * 109.47431 * 299.99803 * 15 14 13 26 26 H 1.08997 * 109.47534 * 59.99577 * 15 14 13 27 27 H 1.08008 * 119.99632 * 304.99991 * 16 15 14 28 28 H 1.07999 * 119.96521 * 180.02562 * 18 13 12 29 29 H 1.07997 * 120.03156 * 179.97438 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 2.4972 2.0463 -1.4000 5 1 1.4472 2.6526 0.7000 6 1 3.5472 1.4400 0.7001 7 6 2.0088 -1.2009 0.0005 8 1 1.4687 -2.1362 0.0005 9 8 3.3571 -1.2010 0.0011 10 6 3.9733 -2.4058 0.1081 11 6 5.3555 -2.4724 0.2252 12 6 5.9789 -3.6994 0.3397 13 6 5.2293 -4.8615 0.3260 14 6 5.9134 -6.1991 0.4444 15 6 6.2690 -6.7154 -0.9513 16 6 6.9525 -8.0532 -0.8330 17 8 6.5182 -9.0082 -1.4309 18 6 3.8530 -4.7987 0.2042 19 6 3.2232 -3.5745 0.0950 20 1 -0.4849 0.8401 0.0004 21 1 5.9419 -1.5655 0.2316 22 1 7.0534 -3.7517 0.4353 23 1 6.8234 -6.0908 1.0345 24 1 5.2448 -6.9070 0.9342 25 1 5.3589 -6.8238 -1.5415 26 1 6.9375 -6.0075 -1.4412 27 1 7.8309 -8.1579 -0.2132 28 1 3.2703 -5.7079 0.1942 29 1 2.1486 -3.5262 -0.0004 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036459254.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:43 Heat of formation + Delta-G solvation = -68.232627 kcal Electronic energy + Delta-G solvation = -13776.338050 eV Core-core repulsion = 11243.337306 eV Total energy + Delta-G solvation = -2533.000743 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.91476 -40.02754 -38.58692 -34.83275 -34.21297 -31.79723 -30.23793 -27.44798 -25.30261 -23.67527 -22.21107 -21.58894 -19.80795 -19.09377 -17.21916 -16.71851 -16.54547 -16.05244 -15.64677 -15.52439 -15.46234 -14.88119 -14.53291 -14.29032 -14.04636 -13.70570 -13.44376 -12.86044 -12.49514 -12.33264 -12.19632 -11.94293 -11.78035 -11.24331 -10.91011 -10.52423 -9.78749 -8.94431 -8.50886 -6.23692 0.58315 0.64112 1.16115 1.31002 1.35883 1.51419 2.27457 2.75875 3.05088 3.18420 3.52301 4.02306 4.09788 4.20381 4.26994 4.42085 4.59237 4.63350 4.74241 4.90036 5.04062 5.06806 5.28278 5.37344 5.42049 5.60189 5.77709 5.84753 5.92851 6.28104 6.56108 6.83390 7.58553 8.60950 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.065799 B = 0.005323 C = 0.005061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 425.438493 B = 5258.828204 C = 5531.323398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.007 3.993 3 Si 0.974 3.026 4 H -0.266 1.266 5 H -0.268 1.268 6 H -0.261 1.261 7 C -0.400 4.400 8 H 0.078 0.922 9 O -0.246 6.246 10 C 0.113 3.887 11 C -0.192 4.192 12 C -0.060 4.060 13 C -0.150 4.150 14 C -0.051 4.051 15 C -0.186 4.186 16 C 0.361 3.639 17 O -0.522 6.522 18 C -0.077 4.077 19 C -0.241 4.241 20 H 0.285 0.715 21 H 0.130 0.870 22 H 0.167 0.833 23 H 0.112 0.888 24 H 0.071 0.929 25 H 0.058 0.942 26 H 0.116 0.884 27 H 0.146 0.854 28 H 0.127 0.873 29 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.293 -9.405 1.817 18.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.191 4.191 3 Si 0.796 3.204 4 H -0.191 1.191 5 H -0.192 1.192 6 H -0.185 1.185 7 C -0.476 4.476 8 H 0.095 0.905 9 O -0.154 6.154 10 C 0.065 3.935 11 C -0.211 4.211 12 C -0.078 4.078 13 C -0.150 4.150 14 C -0.088 4.088 15 C -0.224 4.224 16 C 0.221 3.779 17 O -0.397 6.397 18 C -0.095 4.095 19 C -0.260 4.260 20 H 0.094 0.906 21 H 0.148 0.852 22 H 0.185 0.815 23 H 0.131 0.869 24 H 0.090 0.910 25 H 0.077 0.923 26 H 0.134 0.866 27 H 0.162 0.838 28 H 0.145 0.855 29 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 15.953 -9.582 1.478 18.668 hybrid contribution -0.982 0.883 -0.182 1.333 sum 14.971 -8.699 1.297 17.363 Atomic orbital electron populations 1.69739 1.06996 1.29619 1.50281 1.25333 0.95922 1.02319 0.95522 0.85165 0.78784 0.77150 0.79290 1.19067 1.19247 1.18503 1.20695 0.78263 0.96014 1.52657 0.90491 1.83505 1.21052 1.27586 1.83283 1.19753 0.93503 0.84912 0.95374 1.20613 0.90273 1.00272 1.09918 1.21087 1.00875 0.89584 0.96259 1.19829 0.92533 0.96316 1.06369 1.20242 1.01606 0.91554 0.95448 1.22542 1.02402 0.98195 0.99278 1.26678 0.87043 0.87060 0.77121 1.90414 1.64921 1.43194 1.41141 1.20986 0.95390 0.95781 0.97378 1.21277 1.00022 0.93560 1.11181 0.90581 0.85247 0.81529 0.86940 0.91026 0.92318 0.86628 0.83817 0.85476 0.88075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.92 13.96 21.61 0.30 -55.62 15 2 C 0.01 0.41 5.49 84.83 0.47 0.88 15 3 Si 0.97 45.56 28.62 68.60 1.96 47.52 15 4 H -0.27 -11.94 7.11 99.48 0.71 -11.23 15 5 H -0.27 -11.70 7.11 99.48 0.71 -10.99 15 6 H -0.26 -12.07 7.11 99.48 0.71 -11.37 15 7 C -0.40 -23.87 9.95 67.92 0.68 -23.20 15 8 H 0.08 4.85 5.44 -2.91 -0.02 4.84 15 9 O -0.25 -13.44 8.59 -22.72 -0.20 -13.63 15 10 C 0.11 5.25 6.65 22.58 0.15 5.40 15 11 C -0.19 -6.88 9.99 22.39 0.22 -6.66 15 12 C -0.06 -1.58 9.69 22.25 0.22 -1.37 15 13 C -0.15 -3.91 5.14 -19.83 -0.10 -4.01 15 14 C -0.05 -0.81 5.32 29.85 0.16 -0.65 15 15 C -0.19 -2.87 5.77 29.85 0.17 -2.69 15 16 C 0.36 5.04 11.19 71.24 0.80 5.84 15 17 O -0.52 -13.11 17.90 -1.43 -0.03 -13.14 15 18 C -0.08 -2.61 9.69 22.25 0.22 -2.39 15 19 C -0.24 -10.64 9.17 22.39 0.21 -10.44 15 20 H 0.28 15.73 8.31 -92.71 -0.77 14.96 15 21 H 0.13 4.26 8.06 -2.91 -0.02 4.24 15 22 H 0.17 2.72 8.06 -2.91 -0.02 2.70 15 23 H 0.11 1.00 8.08 -2.39 -0.02 0.98 15 24 H 0.07 1.14 8.08 -2.39 -0.02 1.12 15 25 H 0.06 1.25 8.12 -2.38 -0.02 1.23 15 26 H 0.12 1.44 8.14 -2.39 -0.02 1.42 15 27 H 0.15 0.59 8.06 -2.91 -0.02 0.57 15 28 H 0.13 3.74 8.06 -2.91 -0.02 3.72 15 29 H 0.10 5.02 5.64 -2.91 -0.02 5.00 15 Total: -1.00 -73.35 262.49 6.37 -66.98 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: 1.15 Total: 7.18 kcal Atomic # 6 Polarization: -42.47 SS G_CDS: 3.18 Total: -39.30 kcal Atomic # 7 Polarization: -55.92 SS G_CDS: 0.30 Total: -55.62 kcal Atomic # 8 Polarization: -26.55 SS G_CDS: -0.22 Total: -26.77 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 1.96 Total: 47.52 kcal Total: -73.35 6.37 -66.98 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036459254.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.250 kcal (2) G-P(sol) polarization free energy of solvation -73.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds