Wall clock time and date at job start Mon Mar 30 2020 02:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 N 1.46491 * 109.46957 * 179.72213 * 9 7 2 11 11 N 1.40055 * 125.84980 * 90.02526 * 10 9 7 12 12 C 1.30445 * 109.51355 * 180.02562 * 11 10 9 13 13 C 1.40737 * 108.31773 * 359.97438 * 12 11 10 14 14 C 1.35832 * 125.84330 * 269.71557 * 10 9 7 15 15 N 1.34238 * 134.23468 * 359.97438 * 14 10 9 16 16 C 1.30082 * 121.87353 * 179.97438 * 15 14 10 17 17 N 1.35684 * 123.05815 * 0.03179 * 16 15 14 18 18 H 0.96998 * 119.86471 * 179.97438 * 17 16 15 19 19 C 1.35374 * 120.27253 * 359.54142 * 17 16 15 20 20 O 1.21831 * 121.24271 * 179.91422 * 19 17 16 21 21 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 23 23 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 24 24 H 1.07994 * 125.84280 * 180.02562 * 12 11 10 25 25 H 1.07998 * 118.46453 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 7 2.2028 -3.6127 -0.0102 11 7 2.7354 -4.2415 1.1223 12 6 3.5494 -5.1909 0.7512 13 6 3.5814 -5.2213 -0.6555 14 6 2.7156 -4.2159 -1.1139 15 7 2.5601 -4.0387 -2.4355 16 6 3.1876 -4.7744 -3.3056 17 7 4.0404 -5.7700 -2.9555 18 1 4.4837 -6.2905 -3.6435 19 6 4.2817 -6.0341 -1.6499 20 8 5.0428 -6.9248 -1.3156 21 1 -0.4850 0.8401 -0.0004 22 1 0.6242 -2.5609 0.8844 23 1 0.6244 -2.5529 -0.8956 24 1 4.1032 -5.8426 1.4106 25 1 3.0220 -4.5838 -4.3557 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036667474.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:44 Heat of formation + Delta-G solvation = 61.542234 kcal Electronic energy + Delta-G solvation = -14187.571107 eV Core-core repulsion = 11588.950231 eV Total energy + Delta-G solvation = -2598.620875 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.070 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.54059 -39.27788 -37.15302 -33.80252 -33.29037 -31.67334 -29.38342 -27.32177 -24.21096 -23.75193 -22.84945 -20.15116 -18.47895 -17.97609 -17.32298 -16.75610 -15.63626 -15.08801 -14.56195 -14.31581 -14.01063 -13.75915 -13.30694 -12.64605 -12.28946 -11.76548 -11.13640 -10.93195 -10.55600 -10.37785 -10.26703 -9.99591 -9.90692 -9.65939 -8.66457 -8.30013 -7.99885 -6.28966 -4.35912 1.13788 2.05779 2.76914 2.99902 3.06720 3.20653 3.26696 3.32637 3.96301 4.25035 4.34667 4.72847 5.00378 5.06227 5.17785 5.63913 5.85684 6.40841 6.66306 6.71948 6.93930 7.07980 7.41111 7.67477 7.81630 7.99256 8.05960 8.32263 8.67311 9.29622 10.79531 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.041572 B = 0.007967 C = 0.007473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.368672 B = 3513.462341 C = 3746.128857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.068 3.932 3 Si 0.909 3.091 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.063 0.937 9 C 0.256 3.744 10 N -0.300 5.300 11 N -0.266 5.266 12 C 0.100 3.900 13 C -0.360 4.360 14 C 0.323 3.677 15 N -0.506 5.506 16 C 0.388 3.612 17 N -0.659 5.659 18 H 0.416 0.584 19 C 0.578 3.422 20 O -0.540 6.540 21 H 0.269 0.731 22 H 0.058 0.942 23 H 0.062 0.938 24 H 0.188 0.812 25 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.794 -8.177 -7.623 12.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.136 4.136 3 Si 0.736 3.264 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.575 4.575 8 H 0.081 0.919 9 C 0.139 3.861 10 N -0.080 5.080 11 N -0.086 5.086 12 C -0.088 4.088 13 C -0.377 4.377 14 C 0.083 3.917 15 N -0.228 5.228 16 C 0.095 3.905 17 N -0.305 5.305 18 H 0.255 0.745 19 C 0.373 3.627 20 O -0.418 6.418 21 H 0.078 0.922 22 H 0.076 0.924 23 H 0.080 0.920 24 H 0.205 0.795 25 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 3.773 -7.078 -6.160 10.113 hybrid contribution 1.379 -0.124 -0.804 1.601 sum 5.152 -7.202 -6.964 11.265 Atomic orbital electron populations 1.69918 1.06033 1.27777 1.49038 1.24900 0.94996 0.99413 0.94285 0.86312 0.79709 0.82020 0.78384 1.20243 1.20789 1.19696 1.21215 0.93612 0.89430 1.53195 0.91871 1.19942 0.85850 0.79954 1.00369 1.49555 1.33180 1.25680 0.99553 1.77301 1.13842 1.09586 1.07847 1.23347 0.96868 0.96263 0.92347 1.20976 1.13089 1.08053 0.95539 1.18994 0.93351 0.91795 0.87592 1.67086 1.27455 1.28029 1.00271 1.24621 0.83941 0.82209 0.99720 1.44642 1.42299 1.33622 1.09935 0.74521 1.17504 0.81004 0.82961 0.81189 1.90857 1.37971 1.32819 1.80111 0.92159 0.92414 0.92014 0.79512 0.77428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.03 13.29 55.43 0.74 -24.29 15 2 C 0.07 1.85 5.46 -17.82 -0.10 1.75 15 3 Si 0.91 21.11 29.54 -169.99 -5.02 16.09 15 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 15 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 15 6 H -0.27 -6.34 7.11 56.52 0.40 -5.94 15 7 C -0.54 -14.87 9.39 -34.44 -0.32 -15.19 15 8 H 0.06 1.80 7.81 -52.49 -0.41 1.39 15 9 C 0.26 6.60 6.19 -5.20 -0.03 6.57 15 10 N -0.30 -7.06 3.61 -61.65 -0.22 -7.28 15 11 N -0.27 -5.90 12.47 30.74 0.38 -5.52 15 12 C 0.10 1.92 12.05 -17.20 -0.21 1.71 15 13 C -0.36 -6.96 6.39 -104.91 -0.67 -7.63 15 14 C 0.32 6.75 8.03 -155.95 -1.25 5.50 15 15 N -0.51 -8.95 10.38 -13.46 -0.14 -9.09 15 16 C 0.39 4.42 12.29 -90.13 -1.11 3.31 15 17 N -0.66 -7.53 5.29 -14.45 -0.08 -7.60 15 18 H 0.42 3.00 8.92 -40.82 -0.36 2.64 15 19 C 0.58 9.69 7.99 -12.76 -0.10 9.59 15 20 O -0.54 -10.19 18.00 5.07 0.09 -10.09 15 21 H 0.27 7.10 8.31 -40.82 -0.34 6.76 15 22 H 0.06 1.55 8.14 -51.93 -0.42 1.13 15 23 H 0.06 1.63 8.14 -51.93 -0.42 1.21 15 24 H 0.19 2.88 8.06 -52.49 -0.42 2.45 15 25 H 0.21 1.07 8.06 -52.49 -0.42 0.65 15 LS Contribution 239.10 15.07 3.60 3.60 Total: -1.00 -34.17 239.10 -6.04 -40.21 By element: Atomic # 1 Polarization: -0.03 SS G_CDS: -1.60 Total: -1.63 kcal Atomic # 6 Polarization: 9.40 SS G_CDS: -3.79 Total: 5.61 kcal Atomic # 7 Polarization: -54.46 SS G_CDS: 0.68 Total: -53.78 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.09 Total: -10.09 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -34.17 -6.04 -40.21 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036667474.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.751 kcal (2) G-P(sol) polarization free energy of solvation -34.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds