Wall clock time and date at job start Mon Mar 30 2020 02:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 N 1.46491 * 109.46957 * 179.72213 * 9 7 2 11 11 N 1.40055 * 125.84980 * 90.02526 * 10 9 7 12 12 C 1.30445 * 109.51355 * 180.02562 * 11 10 9 13 13 C 1.40737 * 108.31773 * 359.97438 * 12 11 10 14 14 C 1.35832 * 125.84330 * 269.71557 * 10 9 7 15 15 N 1.34238 * 134.23468 * 359.97438 * 14 10 9 16 16 C 1.30082 * 121.87353 * 179.97438 * 15 14 10 17 17 N 1.35684 * 123.05815 * 0.03179 * 16 15 14 18 18 H 0.96998 * 119.86471 * 179.97438 * 17 16 15 19 19 C 1.35374 * 120.27253 * 359.54142 * 17 16 15 20 20 O 1.21831 * 121.24271 * 179.91422 * 19 17 16 21 21 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 23 23 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 24 24 H 1.07994 * 125.84280 * 180.02562 * 12 11 10 25 25 H 1.07998 * 118.46453 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 7 2.2028 -3.6127 -0.0102 11 7 2.7354 -4.2415 1.1223 12 6 3.5494 -5.1909 0.7512 13 6 3.5814 -5.2213 -0.6555 14 6 2.7156 -4.2159 -1.1139 15 7 2.5601 -4.0387 -2.4355 16 6 3.1876 -4.7744 -3.3056 17 7 4.0404 -5.7700 -2.9555 18 1 4.4837 -6.2905 -3.6435 19 6 4.2817 -6.0341 -1.6499 20 8 5.0428 -6.9248 -1.3156 21 1 -0.4850 0.8401 -0.0004 22 1 0.6242 -2.5609 0.8844 23 1 0.6244 -2.5529 -0.8956 24 1 4.1032 -5.8426 1.4106 25 1 3.0220 -4.5838 -4.3557 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036667474.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:44 Heat of formation + Delta-G solvation = 36.590540 kcal Electronic energy + Delta-G solvation = -14188.653093 eV Core-core repulsion = 11588.950231 eV Total energy + Delta-G solvation = -2599.702862 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.070 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.93463 -40.67514 -38.47786 -35.76076 -34.57579 -33.49946 -30.79138 -29.22072 -25.66841 -25.32506 -24.39308 -21.66904 -19.77487 -19.42050 -18.82078 -18.58401 -17.02157 -16.81598 -16.13634 -15.72042 -15.53978 -15.14092 -14.82013 -14.28972 -13.86880 -13.73442 -13.06351 -12.73486 -12.35112 -12.12174 -11.89771 -11.57701 -11.40563 -10.96071 -10.74111 -9.98466 -9.44526 -8.36283 -6.52614 -0.09716 0.68024 1.29668 1.38243 1.39093 1.51321 1.58158 1.83864 2.33073 2.64909 2.95036 3.18521 3.33752 3.66906 4.00991 4.30353 4.50724 4.83186 4.85695 5.24597 5.42491 5.47099 5.67096 5.75699 5.94039 6.52516 6.54103 6.83296 6.97127 7.17809 8.72242 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.041572 B = 0.007967 C = 0.007473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.368672 B = 3513.462341 C = 3746.128857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.024 3.976 3 Si 0.975 3.025 4 H -0.264 1.264 5 H -0.272 1.272 6 H -0.275 1.275 7 C -0.554 4.554 8 H 0.047 0.953 9 C 0.276 3.724 10 N -0.337 5.337 11 N -0.307 5.307 12 C 0.110 3.890 13 C -0.384 4.384 14 C 0.324 3.676 15 N -0.561 5.561 16 C 0.430 3.570 17 N -0.636 5.636 18 H 0.443 0.557 19 C 0.583 3.417 20 O -0.560 6.560 21 H 0.275 0.725 22 H 0.032 0.968 23 H 0.047 0.953 24 H 0.220 0.780 25 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.096 -8.423 -9.858 14.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.178 4.178 3 Si 0.799 3.201 4 H -0.189 1.189 5 H -0.197 1.197 6 H -0.200 1.200 7 C -0.593 4.593 8 H 0.066 0.934 9 C 0.158 3.842 10 N -0.117 5.117 11 N -0.126 5.126 12 C -0.079 4.079 13 C -0.401 4.401 14 C 0.085 3.915 15 N -0.287 5.287 16 C 0.140 3.860 17 N -0.282 5.282 18 H 0.287 0.713 19 C 0.377 3.623 20 O -0.439 6.439 21 H 0.084 0.916 22 H 0.050 0.950 23 H 0.065 0.935 24 H 0.237 0.763 25 H 0.297 0.703 Dipole moment (debyes) X Y Z Total from point charges 5.103 -7.375 -8.466 12.333 hybrid contribution 1.031 -0.200 -0.260 1.082 sum 6.133 -7.575 -8.727 13.083 Atomic orbital electron populations 1.70005 1.07346 1.28996 1.49189 1.25752 0.95861 1.02724 0.93426 0.85299 0.78149 0.77729 0.78949 1.18897 1.19660 1.20007 1.21348 0.92959 0.90928 1.54023 0.93445 1.19341 0.85986 0.80660 0.98247 1.49221 1.34815 1.26654 1.01040 1.77213 1.15765 1.11281 1.08387 1.23935 0.95452 0.95210 0.93309 1.21301 1.13852 1.08723 0.96184 1.19425 0.92404 0.91077 0.88583 1.67180 1.30964 1.31417 0.99171 1.26028 0.79891 0.78863 1.01217 1.44453 1.41577 1.33407 1.08743 0.71321 1.17270 0.80349 0.82172 0.82486 1.90853 1.38651 1.33440 1.80963 0.91612 0.95024 0.93504 0.76341 0.70348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.45 13.29 21.45 0.28 -52.16 15 2 C 0.02 1.30 5.46 84.66 0.46 1.77 15 3 Si 0.98 43.34 29.54 68.60 2.03 45.36 15 4 H -0.26 -11.14 7.11 99.48 0.71 -10.43 15 5 H -0.27 -11.53 7.11 99.48 0.71 -10.82 15 6 H -0.28 -12.26 7.11 99.48 0.71 -11.55 15 7 C -0.55 -31.79 9.39 25.60 0.24 -31.55 15 8 H 0.05 2.80 7.81 -2.91 -0.02 2.78 15 9 C 0.28 15.02 6.19 85.64 0.53 15.55 15 10 N -0.34 -16.49 3.61 -348.98 -1.26 -17.75 15 11 N -0.31 -14.18 12.47 -56.65 -0.71 -14.88 15 12 C 0.11 4.23 12.05 85.51 1.03 5.26 15 13 C -0.38 -14.60 6.39 -20.05 -0.13 -14.73 15 14 C 0.32 13.62 8.03 133.86 1.07 14.70 15 15 N -0.56 -18.95 10.38 -196.49 -2.04 -20.99 15 16 C 0.43 7.89 12.29 180.18 2.21 10.11 15 17 N -0.64 -11.83 5.29 -317.47 -1.68 -13.51 15 18 H 0.44 4.05 8.92 -92.71 -0.83 3.22 15 19 C 0.58 18.13 7.99 86.24 0.69 18.82 15 20 O -0.56 -19.84 18.00 -4.77 -0.09 -19.92 15 21 H 0.27 14.57 8.31 -92.70 -0.77 13.80 15 22 H 0.03 1.83 8.14 -2.38 -0.02 1.81 15 23 H 0.05 2.62 8.14 -2.39 -0.02 2.60 15 24 H 0.22 6.58 8.06 -2.91 -0.02 6.55 15 25 H 0.28 0.89 8.06 -2.91 -0.02 0.86 15 Total: -1.00 -78.19 239.10 3.07 -75.13 By element: Atomic # 1 Polarization: -1.60 SS G_CDS: 0.41 Total: -1.19 kcal Atomic # 6 Polarization: 13.81 SS G_CDS: 6.11 Total: 19.92 kcal Atomic # 7 Polarization: -113.90 SS G_CDS: -5.40 Total: -119.30 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -0.09 Total: -19.92 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.36 kcal Total: -78.19 3.07 -75.13 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036667474.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.717 kcal (2) G-P(sol) polarization free energy of solvation -78.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds