Wall clock time and date at job start Mon Mar 30 2020 03:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 H 1.09001 * 109.70714 * 54.40347 * 10 9 7 12 12 C 1.53465 * 109.71018 * 175.00183 * 10 9 7 13 13 O 1.43179 * 108.24706 * 179.42203 * 12 10 9 14 14 C 1.36110 * 116.71571 * 313.81829 * 13 12 10 15 15 C 1.38699 * 119.40049 * 197.18744 * 14 13 12 16 16 C 1.38198 * 120.06475 * 180.21320 * 15 14 13 17 17 C 1.38259 * 120.11664 * 359.92906 * 16 15 14 18 18 C 1.38202 * 120.10960 * 359.97438 * 17 16 15 19 19 C 1.38712 * 120.06239 * 0.02562 * 18 17 16 20 20 O 1.36112 * 119.38631 * 180.28058 * 19 18 17 21 21 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 23 23 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 24 24 H 1.09001 * 109.70859 * 299.10308 * 12 10 9 25 25 H 1.08990 * 109.71427 * 59.72862 * 12 10 9 26 26 H 1.07995 * 119.96818 * 0.15354 * 15 14 13 27 27 H 1.07994 * 119.94542 * 179.97438 * 16 15 14 28 28 H 1.07990 * 119.94856 * 179.97438 * 17 16 15 29 29 H 1.07993 * 119.96544 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 1 2.9379 -3.5571 0.8245 12 6 1.4874 -4.9913 0.1094 13 8 2.4442 -6.0563 0.0879 14 6 3.4104 -5.9915 -0.8685 15 6 4.1357 -7.1315 -1.1819 16 6 5.1230 -7.0802 -2.1476 17 6 5.3895 -5.8935 -2.8049 18 6 4.6691 -4.7545 -2.4988 19 6 3.6769 -4.7991 -1.5305 20 8 2.9719 -3.6705 -1.2440 21 1 -0.4850 0.8401 -0.0004 22 1 0.6242 -2.5609 0.8844 23 1 0.6244 -2.5529 -0.8956 24 1 0.9324 -5.0148 1.0473 25 1 0.7988 -5.0989 -0.7285 26 1 3.9295 -8.0598 -0.6700 27 1 5.6868 -7.9689 -2.3898 28 1 6.1618 -5.8564 -3.5588 29 1 4.8795 -3.8286 -3.0134 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039281072.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:27 Heat of formation + Delta-G solvation = -57.875499 kcal Electronic energy + Delta-G solvation = -14530.258762 eV Core-core repulsion = 11997.707137 eV Total energy + Delta-G solvation = -2532.551625 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.75712 -37.42431 -36.72576 -33.49187 -31.40877 -30.36618 -28.68997 -26.88271 -24.10426 -22.57386 -21.85247 -19.97763 -18.27853 -17.03406 -16.50501 -16.15855 -14.87014 -14.74449 -14.46193 -14.14165 -13.90039 -13.52745 -13.34585 -12.52376 -12.13179 -11.69332 -11.61297 -11.37602 -10.97533 -10.75944 -10.69562 -10.33124 -10.13709 -9.50749 -9.17551 -8.47082 -8.35523 -7.66517 -6.09506 -4.11217 1.54097 1.61428 3.28411 3.36010 3.41327 3.48906 3.80720 4.02479 4.40124 4.73082 5.14905 5.15887 5.28055 5.37773 5.50069 5.53409 5.56801 5.76680 6.04366 6.18081 6.29131 6.38630 6.56545 6.66675 6.90298 7.26240 7.38861 7.53232 7.87112 7.98629 8.25677 8.92439 9.52791 11.02022 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.043793 B = 0.007389 C = 0.006519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.220978 B = 3788.342934 C = 4293.942191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.897 3.103 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.515 4.515 8 H 0.060 0.940 9 C 0.029 3.971 10 C 0.061 3.939 11 H 0.074 0.926 12 C 0.022 3.978 13 O -0.316 6.316 14 C 0.044 3.956 15 C -0.119 4.119 16 C -0.133 4.133 17 C -0.120 4.120 18 C -0.124 4.124 19 C 0.065 3.935 20 O -0.286 6.286 21 H 0.262 0.738 22 H 0.043 0.957 23 H 0.031 0.969 24 H 0.119 0.881 25 H 0.073 0.927 26 H 0.128 0.872 27 H 0.125 0.875 28 H 0.125 0.875 29 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.798 -11.636 -2.602 13.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.553 4.553 8 H 0.078 0.922 9 C -0.008 4.008 10 C 0.005 3.995 11 H 0.092 0.908 12 C -0.053 4.053 13 O -0.231 6.231 14 C -0.002 4.002 15 C -0.138 4.138 16 C -0.151 4.151 17 C -0.139 4.139 18 C -0.143 4.143 19 C 0.018 3.982 20 O -0.199 6.199 21 H 0.071 0.929 22 H 0.061 0.939 23 H 0.050 0.950 24 H 0.137 0.863 25 H 0.091 0.909 26 H 0.146 0.854 27 H 0.143 0.857 28 H 0.143 0.857 29 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 6.580 -11.470 -2.554 13.468 hybrid contribution 0.232 1.025 0.081 1.054 sum 6.812 -10.445 -2.474 12.713 Atomic orbital electron populations 1.69954 1.06060 1.26815 1.50720 1.24993 0.94886 0.99412 0.95094 0.86454 0.80170 0.83353 0.77591 1.19633 1.20917 1.20973 1.21110 0.93272 0.90209 1.50698 0.92167 1.19208 0.92641 0.90145 0.98789 1.23606 0.94976 0.96506 0.84403 0.90763 1.23875 0.90277 0.86515 1.04628 1.86219 1.38776 1.47818 1.50299 1.19005 0.93479 0.93532 0.94143 1.20362 0.97778 0.96139 0.99508 1.20766 0.98735 0.98187 0.97406 1.20833 1.00126 0.92261 1.00631 1.20497 0.94896 0.99781 0.99077 1.19254 0.94821 0.86061 0.98045 1.86559 1.60381 1.32738 1.40267 0.92864 0.93898 0.95031 0.86314 0.90872 0.85447 0.85738 0.85667 0.84981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.29 13.29 55.43 0.74 -25.55 15 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 15 3 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 15 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 15 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 15 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 7 C -0.51 -14.41 8.91 -34.44 -0.31 -14.72 15 8 H 0.06 1.69 7.74 -52.49 -0.41 1.28 15 9 C 0.03 0.72 4.70 -27.88 -0.13 0.59 15 10 C 0.06 1.30 2.96 -26.49 -0.08 1.23 15 11 H 0.07 1.59 8.14 -51.93 -0.42 1.17 15 12 C 0.02 0.39 6.56 37.40 0.25 0.64 15 13 O -0.32 -5.74 10.42 -32.88 -0.34 -6.08 15 14 C 0.04 0.78 6.49 -39.14 -0.25 0.53 15 15 C -0.12 -1.75 9.96 -39.43 -0.39 -2.14 15 16 C -0.13 -1.69 10.04 -39.59 -0.40 -2.08 15 17 C -0.12 -1.59 10.04 -39.59 -0.40 -1.99 15 18 C -0.12 -2.02 9.96 -39.42 -0.39 -2.41 15 19 C 0.06 1.24 6.49 -39.14 -0.25 0.99 15 20 O -0.29 -6.36 9.86 -32.88 -0.32 -6.69 15 21 H 0.26 7.24 8.31 -40.82 -0.34 6.90 15 22 H 0.04 1.08 8.14 -51.93 -0.42 0.65 15 23 H 0.03 0.84 8.14 -51.93 -0.42 0.42 15 24 H 0.12 1.82 8.14 -51.93 -0.42 1.40 15 25 H 0.07 1.28 8.14 -51.93 -0.42 0.86 15 26 H 0.13 1.60 8.06 -52.49 -0.42 1.17 15 27 H 0.12 1.18 8.06 -52.49 -0.42 0.76 15 28 H 0.13 1.27 8.06 -52.49 -0.42 0.85 15 29 H 0.13 2.04 8.06 -52.49 -0.42 1.61 15 LS Contribution 255.00 15.07 3.84 3.84 Total: -1.00 -30.52 255.00 -6.91 -37.43 By element: Atomic # 1 Polarization: 1.65 SS G_CDS: -3.35 Total: -1.70 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: -2.46 Total: -17.85 kcal Atomic # 7 Polarization: -26.29 SS G_CDS: 0.74 Total: -25.55 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: -0.67 Total: -12.77 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -30.52 -6.91 -37.43 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039281072.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.448 kcal (2) G-P(sol) polarization free energy of solvation -30.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds