Wall clock time and date at job start Mon Mar 30 2020 03:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 H 1.09001 * 109.70714 * 54.40347 * 10 9 7 12 12 C 1.53465 * 109.71018 * 175.00183 * 10 9 7 13 13 O 1.43179 * 108.24706 * 179.42203 * 12 10 9 14 14 C 1.36110 * 116.71571 * 313.81829 * 13 12 10 15 15 C 1.38699 * 119.40049 * 197.18744 * 14 13 12 16 16 C 1.38198 * 120.06475 * 180.21320 * 15 14 13 17 17 C 1.38259 * 120.11664 * 359.92906 * 16 15 14 18 18 C 1.38202 * 120.10960 * 359.97438 * 17 16 15 19 19 C 1.38712 * 120.06239 * 0.02562 * 18 17 16 20 20 O 1.36112 * 119.38631 * 180.28058 * 19 18 17 21 21 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 23 23 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 24 24 H 1.09001 * 109.70859 * 299.10308 * 12 10 9 25 25 H 1.08990 * 109.71427 * 59.72862 * 12 10 9 26 26 H 1.07995 * 119.96818 * 0.15354 * 15 14 13 27 27 H 1.07994 * 119.94542 * 179.97438 * 16 15 14 28 28 H 1.07990 * 119.94856 * 179.97438 * 17 16 15 29 29 H 1.07993 * 119.96544 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 1 2.9379 -3.5571 0.8245 12 6 1.4874 -4.9913 0.1094 13 8 2.4442 -6.0563 0.0879 14 6 3.4104 -5.9915 -0.8685 15 6 4.1357 -7.1315 -1.1819 16 6 5.1230 -7.0802 -2.1476 17 6 5.3895 -5.8935 -2.8049 18 6 4.6691 -4.7545 -2.4988 19 6 3.6769 -4.7991 -1.5305 20 8 2.9719 -3.6705 -1.2440 21 1 -0.4850 0.8401 -0.0004 22 1 0.6242 -2.5609 0.8844 23 1 0.6244 -2.5529 -0.8956 24 1 0.9324 -5.0148 1.0473 25 1 0.7988 -5.0989 -0.7285 26 1 3.9295 -8.0598 -0.6700 27 1 5.6868 -7.9689 -2.3898 28 1 6.1618 -5.8564 -3.5588 29 1 4.8795 -3.8286 -3.0134 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039281072.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:27 Heat of formation + Delta-G solvation = -76.541835 kcal Electronic energy + Delta-G solvation = -14531.068195 eV Core-core repulsion = 11997.707137 eV Total energy + Delta-G solvation = -2533.361058 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.14368 -38.69618 -38.18069 -35.49588 -33.19469 -31.57097 -30.13394 -28.60442 -25.80319 -23.98372 -23.38955 -21.45320 -19.72160 -18.61804 -18.21326 -17.71087 -16.59556 -16.10840 -15.99650 -15.60262 -15.32824 -14.82171 -14.71985 -14.34533 -13.87917 -13.37907 -13.13365 -12.79504 -12.62342 -12.49873 -12.22563 -12.00467 -11.77041 -11.46013 -10.99965 -10.64218 -9.58076 -8.98875 -8.26353 -6.35742 0.35322 0.39994 1.37412 1.38336 1.51683 2.13348 2.37797 2.39236 2.80949 3.08882 3.34718 3.75260 3.88341 4.07479 4.20986 4.30786 4.45194 4.49706 4.55939 4.68348 4.92988 5.22178 5.27123 5.31059 5.39827 5.54330 5.68560 5.80588 6.01220 6.15914 6.55704 6.74386 7.32213 8.85548 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.043793 B = 0.007389 C = 0.006519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.220978 B = 3788.342934 C = 4293.942191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.006 3.994 3 Si 0.964 3.036 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.273 1.273 7 C -0.536 4.536 8 H 0.051 0.949 9 C 0.036 3.964 10 C 0.067 3.933 11 H 0.065 0.935 12 C 0.032 3.968 13 O -0.319 6.319 14 C 0.017 3.983 15 C -0.119 4.119 16 C -0.115 4.115 17 C -0.109 4.109 18 C -0.138 4.138 19 C 0.021 3.979 20 O -0.320 6.320 21 H 0.266 0.734 22 H 0.037 0.963 23 H 0.005 0.995 24 H 0.143 0.857 25 H 0.072 0.928 26 H 0.152 0.848 27 H 0.171 0.829 28 H 0.165 0.835 29 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.659 -13.049 -3.183 15.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.192 4.192 3 Si 0.789 3.211 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.198 1.198 7 C -0.574 4.574 8 H 0.069 0.931 9 C -0.001 4.001 10 C 0.011 3.989 11 H 0.083 0.917 12 C -0.043 4.043 13 O -0.234 6.234 14 C -0.028 4.028 15 C -0.138 4.138 16 C -0.132 4.132 17 C -0.126 4.126 18 C -0.157 4.157 19 C -0.024 4.024 20 O -0.235 6.235 21 H 0.075 0.925 22 H 0.055 0.945 23 H 0.024 0.976 24 H 0.161 0.839 25 H 0.090 0.910 26 H 0.169 0.831 27 H 0.188 0.812 28 H 0.182 0.818 29 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 8.453 -12.905 -3.138 15.742 hybrid contribution -0.245 1.351 0.172 1.384 sum 8.207 -11.554 -2.966 14.479 Atomic orbital electron populations 1.70053 1.07458 1.27970 1.51326 1.25858 0.95806 1.03034 0.94533 0.85404 0.78818 0.78844 0.78029 1.19283 1.20285 1.19788 1.21420 0.93128 0.91892 1.50921 0.93056 1.19001 0.92952 0.91043 0.97116 1.23258 0.94345 0.96928 0.84355 0.91664 1.23778 0.89910 0.84757 1.05849 1.86197 1.39033 1.47307 1.50906 1.19410 0.94372 0.94328 0.94707 1.20805 0.97349 0.95835 0.99776 1.21339 0.97262 0.99439 0.95207 1.21312 0.99619 0.91110 1.00597 1.20784 0.94896 1.01302 0.98679 1.19678 0.96541 0.85759 1.00399 1.86450 1.61635 1.35062 1.40389 0.92478 0.94472 0.97629 0.83941 0.90963 0.83081 0.81181 0.81778 0.85131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.54 13.29 21.45 0.28 -55.26 15 2 C 0.01 0.35 5.46 84.66 0.46 0.81 15 3 Si 0.96 44.86 29.54 68.60 2.03 46.89 15 4 H -0.27 -12.22 7.11 99.48 0.71 -11.52 15 5 H -0.28 -12.57 7.11 99.48 0.71 -11.86 15 6 H -0.27 -12.13 7.11 99.48 0.71 -11.42 15 7 C -0.54 -31.05 8.91 25.60 0.23 -30.83 15 8 H 0.05 2.99 7.74 -2.91 -0.02 2.97 15 9 C 0.04 1.88 4.70 29.85 0.14 2.02 15 10 C 0.07 3.00 2.96 30.75 0.09 3.09 15 11 H 0.07 2.95 8.14 -2.39 -0.02 2.93 15 12 C 0.03 1.17 6.56 72.14 0.47 1.65 15 13 O -0.32 -11.51 10.42 -82.57 -0.86 -12.37 15 14 C 0.02 0.58 6.49 22.56 0.15 0.73 15 15 C -0.12 -3.15 9.96 22.37 0.22 -2.92 15 16 C -0.11 -2.39 10.04 22.27 0.22 -2.17 15 17 C -0.11 -2.48 10.04 22.27 0.22 -2.26 15 18 C -0.14 -4.40 9.96 22.37 0.22 -4.18 15 19 C 0.02 0.84 6.49 22.56 0.15 0.98 15 20 O -0.32 -14.95 9.86 -82.60 -0.81 -15.77 15 21 H 0.27 14.90 8.31 -92.70 -0.77 14.13 15 22 H 0.04 1.95 8.14 -2.38 -0.02 1.93 15 23 H 0.01 0.30 8.14 -2.39 -0.02 0.29 15 24 H 0.14 4.37 8.14 -2.39 -0.02 4.35 15 25 H 0.07 2.61 8.14 -2.39 -0.02 2.59 15 26 H 0.15 3.22 8.06 -2.91 -0.02 3.19 15 27 H 0.17 2.07 8.06 -2.91 -0.02 2.05 15 28 H 0.16 2.48 8.06 -2.92 -0.02 2.45 15 29 H 0.13 4.05 8.06 -2.91 -0.02 4.02 15 Total: -1.00 -67.83 255.00 4.35 -63.48 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: 1.14 Total: 6.10 kcal Atomic # 6 Polarization: -35.66 SS G_CDS: 2.58 Total: -33.08 kcal Atomic # 7 Polarization: -55.54 SS G_CDS: 0.28 Total: -55.26 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: -1.68 Total: -28.13 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -67.83 4.35 -63.48 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039281072.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.063 kcal (2) G-P(sol) polarization free energy of solvation -67.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds