Wall clock time and date at job start Mon Mar 30 2020 03:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99671 * 2 1 4 4 H 1.48499 * 109.47496 * 269.99963 * 3 2 1 5 5 H 1.48500 * 109.47036 * 30.00109 * 3 2 1 6 6 H 1.48501 * 109.46719 * 149.99589 * 3 2 1 7 7 C 1.37872 * 120.00391 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99710 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00364 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47155 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.70515 * 304.99701 * 10 9 7 12 12 C 1.53468 * 109.74244 * 184.38720 * 10 9 7 13 13 O 1.43168 * 108.25479 * 180.56887 * 12 10 9 14 14 C 1.36113 * 116.70672 * 46.20145 * 13 12 10 15 15 C 1.38698 * 119.39292 * 162.99805 * 14 13 12 16 16 C 1.38201 * 120.06407 * 179.66803 * 15 14 13 17 17 C 1.38254 * 120.11294 * 359.97438 * 16 15 14 18 18 C 1.38198 * 120.11231 * 0.03362 * 17 16 15 19 19 C 1.38699 * 120.06640 * 0.02562 * 18 17 16 20 20 O 1.36107 * 119.39652 * 179.86544 * 19 18 17 21 21 H 0.96999 * 120.00451 * 0.02562 * 1 2 3 22 22 H 1.08997 * 109.47040 * 59.99631 * 9 7 2 23 23 H 1.09001 * 109.46429 * 299.99857 * 9 7 2 24 24 H 1.08998 * 109.71621 * 300.24813 * 12 10 9 25 25 H 1.09008 * 109.70860 * 60.87497 * 12 10 9 26 26 H 1.07997 * 119.97083 * 359.64473 * 15 14 13 27 27 H 1.07999 * 119.94388 * 179.97438 * 16 15 14 28 28 H 1.07999 * 119.94069 * 180.02562 * 17 16 15 29 29 H 1.07997 * 119.96591 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5465 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 6 4.0216 -2.6364 0.0010 11 1 3.5889 -3.1793 0.8413 12 6 5.5522 -2.6451 0.1121 13 8 5.9953 -4.0064 0.0956 14 6 5.4504 -4.8157 -0.8535 15 6 6.0706 -6.0176 -1.1609 16 6 5.5256 -6.8531 -2.1174 17 6 4.3608 -6.4937 -2.7699 18 6 3.7380 -5.2975 -2.4683 19 6 4.2804 -4.4538 -1.5103 20 8 3.6572 -3.2777 -1.2260 21 1 -0.4851 0.8400 -0.0004 22 1 3.8745 -0.6799 0.8911 23 1 3.8751 -0.6803 -0.8889 24 1 5.9852 -2.1077 -0.7316 25 1 5.8557 -2.1709 1.0455 26 1 6.9805 -6.3007 -0.6527 27 1 6.0103 -7.7883 -2.3556 28 1 3.9371 -7.1489 -3.5165 29 1 2.8280 -5.0193 -2.9791 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039281074.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:30 Heat of formation + Delta-G solvation = -53.105752 kcal Electronic energy + Delta-G solvation = -14560.960159 eV Core-core repulsion = 12028.615366 eV Total energy + Delta-G solvation = -2532.344793 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.82806 -37.48043 -36.80080 -33.49255 -31.61183 -30.40315 -28.91454 -27.20859 -24.13013 -22.55661 -21.60769 -20.05044 -18.33081 -17.13308 -16.68648 -16.43195 -14.88067 -14.84178 -14.46100 -14.01488 -13.92201 -13.58285 -13.47243 -12.82025 -12.26077 -11.93144 -11.72059 -11.59279 -11.04273 -10.77274 -10.56448 -10.40491 -10.00701 -9.59128 -9.31572 -8.61998 -8.38854 -7.71355 -6.10200 -4.09532 1.51442 1.58051 3.25148 3.31990 3.32844 3.41533 3.72372 3.99056 4.37209 4.64977 5.04209 5.13391 5.22384 5.27224 5.44535 5.46257 5.51017 5.70524 5.94389 6.09191 6.13655 6.34441 6.51153 6.64399 6.79640 6.89685 7.00607 7.35724 7.61471 7.93076 8.44477 8.95263 9.48903 11.03074 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.048213 B = 0.007503 C = 0.006751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.611726 B = 3731.185423 C = 4146.801894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.069 3.931 3 Si 0.878 3.122 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.517 4.517 8 H 0.076 0.924 9 C -0.006 4.006 10 C 0.070 3.930 11 H 0.080 0.920 12 C 0.020 3.980 13 O -0.315 6.315 14 C 0.042 3.958 15 C -0.119 4.119 16 C -0.132 4.132 17 C -0.119 4.119 18 C -0.121 4.121 19 C 0.065 3.935 20 O -0.283 6.283 21 H 0.264 0.736 22 H 0.042 0.958 23 H 0.026 0.974 24 H 0.072 0.928 25 H 0.119 0.881 26 H 0.128 0.872 27 H 0.125 0.875 28 H 0.126 0.874 29 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.656 -9.161 -2.620 15.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.133 4.133 3 Si 0.705 3.295 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.555 4.555 8 H 0.095 0.905 9 C -0.043 4.043 10 C 0.014 3.986 11 H 0.098 0.902 12 C -0.055 4.055 13 O -0.229 6.229 14 C -0.003 4.003 15 C -0.137 4.137 16 C -0.150 4.150 17 C -0.137 4.137 18 C -0.140 4.140 19 C 0.018 3.982 20 O -0.197 6.197 21 H 0.074 0.926 22 H 0.060 0.940 23 H 0.044 0.956 24 H 0.091 0.909 25 H 0.137 0.863 26 H 0.146 0.854 27 H 0.143 0.857 28 H 0.144 0.856 29 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 11.484 -8.960 -2.570 14.790 hybrid contribution 0.309 1.093 0.068 1.138 sum 11.792 -7.866 -2.502 14.394 Atomic orbital electron populations 1.69897 1.06248 1.26975 1.50539 1.24989 0.94781 0.98996 0.94510 0.86813 0.80231 0.83790 0.78639 1.20134 1.21169 1.19094 1.20931 0.88428 0.94916 1.51225 0.90540 1.19660 0.98848 0.88015 0.97791 1.23312 0.92013 0.98086 0.85214 0.90193 1.23872 0.96488 0.80586 1.04550 1.86225 1.64324 1.21514 1.50872 1.18998 0.93218 0.93717 0.94371 1.20357 1.00654 0.93124 0.99599 1.20780 0.97043 0.99745 0.97431 1.20850 0.96123 0.96140 1.00623 1.20520 1.01146 0.93263 0.99086 1.19230 0.91488 0.89214 0.98237 1.86555 1.61535 1.31240 1.40385 0.92572 0.94049 0.95571 0.90927 0.86320 0.85419 0.85676 0.85569 0.84822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.50 13.96 55.43 0.77 -26.72 15 2 C 0.07 1.98 5.47 -17.82 -0.10 1.89 15 3 Si 0.88 21.08 27.47 -169.99 -4.67 16.42 15 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 15 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 15 6 H -0.27 -5.97 6.54 56.52 0.37 -5.60 15 7 C -0.52 -14.63 9.45 -34.44 -0.33 -14.96 15 8 H 0.08 2.38 7.99 -52.48 -0.42 1.96 15 9 C -0.01 -0.14 3.78 -27.88 -0.11 -0.24 15 10 C 0.07 1.44 2.96 -26.49 -0.08 1.36 15 11 H 0.08 1.68 8.14 -51.93 -0.42 1.26 15 12 C 0.02 0.34 6.56 37.40 0.25 0.59 15 13 O -0.31 -5.50 10.42 -32.88 -0.34 -5.84 15 14 C 0.04 0.73 6.49 -39.14 -0.25 0.48 15 15 C -0.12 -1.70 9.96 -39.43 -0.39 -2.10 15 16 C -0.13 -1.65 10.04 -39.59 -0.40 -2.04 15 17 C -0.12 -1.57 10.04 -39.59 -0.40 -1.96 15 18 C -0.12 -1.98 9.96 -39.43 -0.39 -2.37 15 19 C 0.06 1.23 6.49 -39.14 -0.25 0.97 15 20 O -0.28 -6.22 9.85 -32.87 -0.32 -6.55 15 21 H 0.26 7.55 8.31 -40.82 -0.34 7.21 15 22 H 0.04 0.90 7.20 -51.93 -0.37 0.53 15 23 H 0.03 0.60 7.57 -51.93 -0.39 0.21 15 24 H 0.07 1.17 8.14 -51.93 -0.42 0.74 15 25 H 0.12 1.66 8.14 -51.92 -0.42 1.24 15 26 H 0.13 1.55 8.06 -52.49 -0.42 1.13 15 27 H 0.13 1.16 8.06 -52.49 -0.42 0.74 15 28 H 0.13 1.27 8.06 -52.49 -0.42 0.85 15 29 H 0.13 2.09 8.06 -52.49 -0.42 1.66 15 LS Contribution 251.38 15.07 3.79 3.79 Total: -1.00 -31.41 251.38 -6.54 -37.95 By element: Atomic # 1 Polarization: 2.66 SS G_CDS: -3.31 Total: -0.65 kcal Atomic # 6 Polarization: -15.94 SS G_CDS: -2.45 Total: -18.39 kcal Atomic # 7 Polarization: -27.50 SS G_CDS: 0.77 Total: -26.72 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: -0.67 Total: -12.39 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.67 Total: 16.42 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -31.41 -6.54 -37.95 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039281074.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.160 kcal (2) G-P(sol) polarization free energy of solvation -31.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds