Wall clock time and date at job start Mon Mar 30 2020 03:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99671 * 2 1 4 4 H 1.48499 * 109.47496 * 269.99963 * 3 2 1 5 5 H 1.48500 * 109.47036 * 30.00109 * 3 2 1 6 6 H 1.48501 * 109.46719 * 149.99589 * 3 2 1 7 7 C 1.37872 * 120.00391 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99710 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00364 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47155 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.70515 * 304.99701 * 10 9 7 12 12 C 1.53468 * 109.74244 * 184.38720 * 10 9 7 13 13 O 1.43168 * 108.25479 * 180.56887 * 12 10 9 14 14 C 1.36113 * 116.70672 * 46.20145 * 13 12 10 15 15 C 1.38698 * 119.39292 * 162.99805 * 14 13 12 16 16 C 1.38201 * 120.06407 * 179.66803 * 15 14 13 17 17 C 1.38254 * 120.11294 * 359.97438 * 16 15 14 18 18 C 1.38198 * 120.11231 * 0.03362 * 17 16 15 19 19 C 1.38699 * 120.06640 * 0.02562 * 18 17 16 20 20 O 1.36107 * 119.39652 * 179.86544 * 19 18 17 21 21 H 0.96999 * 120.00451 * 0.02562 * 1 2 3 22 22 H 1.08997 * 109.47040 * 59.99631 * 9 7 2 23 23 H 1.09001 * 109.46429 * 299.99857 * 9 7 2 24 24 H 1.08998 * 109.71621 * 300.24813 * 12 10 9 25 25 H 1.09008 * 109.70860 * 60.87497 * 12 10 9 26 26 H 1.07997 * 119.97083 * 359.64473 * 15 14 13 27 27 H 1.07999 * 119.94388 * 179.97438 * 16 15 14 28 28 H 1.07999 * 119.94069 * 180.02562 * 17 16 15 29 29 H 1.07997 * 119.96591 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5465 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 6 4.0216 -2.6364 0.0010 11 1 3.5889 -3.1793 0.8413 12 6 5.5522 -2.6451 0.1121 13 8 5.9953 -4.0064 0.0956 14 6 5.4504 -4.8157 -0.8535 15 6 6.0706 -6.0176 -1.1609 16 6 5.5256 -6.8531 -2.1174 17 6 4.3608 -6.4937 -2.7699 18 6 3.7380 -5.2975 -2.4683 19 6 4.2804 -4.4538 -1.5103 20 8 3.6572 -3.2777 -1.2260 21 1 -0.4851 0.8400 -0.0004 22 1 3.8745 -0.6799 0.8911 23 1 3.8751 -0.6803 -0.8889 24 1 5.9852 -2.1077 -0.7316 25 1 5.8557 -2.1709 1.0455 26 1 6.9805 -6.3007 -0.6527 27 1 6.0103 -7.7883 -2.3556 28 1 3.9371 -7.1489 -3.5165 29 1 2.8280 -5.0193 -2.9791 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039281074.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:29 Heat of formation + Delta-G solvation = -73.768257 kcal Electronic energy + Delta-G solvation = -14561.856153 eV Core-core repulsion = 12028.615366 eV Total energy + Delta-G solvation = -2533.240786 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.16273 -38.72000 -38.19356 -35.44185 -33.44685 -31.58660 -30.35143 -28.80992 -25.70354 -23.85708 -23.23319 -21.48400 -19.75209 -18.90189 -18.31554 -17.75688 -16.48539 -16.15143 -15.89751 -15.57681 -15.37045 -14.94397 -14.81649 -14.56071 -13.96463 -13.52600 -13.21956 -12.79896 -12.51864 -12.31291 -12.08489 -12.00696 -11.77597 -11.51182 -11.08611 -10.81102 -9.59227 -9.00229 -8.31362 -6.37546 0.34113 0.38623 1.36070 1.38606 1.49257 2.13060 2.33523 2.38195 2.79689 3.04559 3.31063 3.71680 3.88134 4.03578 4.19146 4.29338 4.42224 4.47575 4.52881 4.64370 4.89719 4.98893 5.17851 5.28266 5.28823 5.52431 5.53360 5.79096 6.03340 6.22210 6.53842 6.68898 7.24969 8.86026 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.048213 B = 0.007503 C = 0.006751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.611726 B = 3731.185423 C = 4146.801894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.003 3.997 3 Si 0.956 3.044 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.232 1.232 7 C -0.530 4.530 8 H 0.022 0.978 9 C -0.001 4.001 10 C 0.068 3.932 11 H 0.060 0.940 12 C 0.031 3.969 13 O -0.318 6.318 14 C 0.020 3.980 15 C -0.118 4.118 16 C -0.114 4.114 17 C -0.109 4.109 18 C -0.141 4.141 19 C 0.022 3.978 20 O -0.322 6.322 21 H 0.268 0.732 22 H 0.066 0.934 23 H 0.032 0.968 24 H 0.081 0.919 25 H 0.151 0.849 26 H 0.154 0.846 27 H 0.171 0.829 28 H 0.163 0.837 29 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.732 -9.764 -2.955 17.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.194 4.194 3 Si 0.778 3.222 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.155 1.155 7 C -0.567 4.567 8 H 0.041 0.959 9 C -0.039 4.039 10 C 0.012 3.988 11 H 0.078 0.922 12 C -0.044 4.044 13 O -0.233 6.233 14 C -0.025 4.025 15 C -0.137 4.137 16 C -0.132 4.132 17 C -0.127 4.127 18 C -0.159 4.159 19 C -0.024 4.024 20 O -0.238 6.238 21 H 0.076 0.924 22 H 0.083 0.917 23 H 0.050 0.950 24 H 0.099 0.901 25 H 0.168 0.832 26 H 0.171 0.829 27 H 0.189 0.811 28 H 0.180 0.820 29 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 14.584 -9.596 -2.904 17.698 hybrid contribution -0.716 1.050 0.096 1.275 sum 13.868 -8.546 -2.808 16.530 Atomic orbital electron populations 1.70076 1.08559 1.28352 1.52224 1.26076 0.95725 1.03745 0.93817 0.85588 0.79900 0.77512 0.79226 1.19509 1.20839 1.15524 1.21200 0.91445 0.93055 1.51041 0.95920 1.19577 0.95105 0.90353 0.98818 1.23137 0.94923 0.96208 0.84580 0.92214 1.23868 0.93102 0.80918 1.06555 1.86201 1.64179 1.21684 1.51258 1.19354 0.93348 0.95003 0.94784 1.20814 1.01249 0.91852 0.99747 1.21344 0.96009 1.00539 0.95303 1.21298 0.95938 0.94823 1.00653 1.20775 1.01530 0.94563 0.99069 1.19640 0.93041 0.89196 1.00491 1.86459 1.63270 1.33198 1.40842 0.92359 0.91656 0.95008 0.90059 0.83188 0.82854 0.81140 0.81960 0.85630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.70 13.96 21.45 0.30 -60.40 15 2 C 0.00 0.18 5.47 84.65 0.46 0.64 15 3 Si 0.96 43.28 27.47 68.60 1.88 45.17 15 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 15 5 H -0.28 -12.58 7.11 99.48 0.71 -11.87 15 6 H -0.23 -9.21 6.54 99.48 0.65 -8.56 15 7 C -0.53 -31.32 9.45 25.60 0.24 -31.08 15 8 H 0.02 1.52 7.99 -2.91 -0.02 1.50 15 9 C 0.00 -0.07 3.78 29.85 0.11 0.05 15 10 C 0.07 2.86 2.96 30.75 0.09 2.95 15 11 H 0.06 2.67 8.14 -2.39 -0.02 2.65 15 12 C 0.03 0.99 6.56 72.14 0.47 1.46 15 13 O -0.32 -10.74 10.42 -82.61 -0.86 -11.60 15 14 C 0.02 0.68 6.49 22.56 0.15 0.82 15 15 C -0.12 -3.04 9.96 22.37 0.22 -2.81 15 16 C -0.11 -2.37 10.04 22.26 0.22 -2.15 15 17 C -0.11 -2.57 10.04 22.26 0.22 -2.35 15 18 C -0.14 -4.62 9.96 22.37 0.22 -4.40 15 19 C 0.02 0.84 6.49 22.56 0.15 0.98 15 20 O -0.32 -14.93 9.85 -82.54 -0.81 -15.74 15 21 H 0.27 15.80 8.31 -92.71 -0.77 15.03 15 22 H 0.07 2.71 7.20 -2.39 -0.02 2.69 15 23 H 0.03 1.44 7.57 -2.39 -0.02 1.42 15 24 H 0.08 2.48 8.14 -2.39 -0.02 2.46 15 25 H 0.15 3.79 8.14 -2.38 -0.02 3.77 15 26 H 0.15 3.10 8.06 -2.91 -0.02 3.08 15 27 H 0.17 2.06 8.06 -2.91 -0.02 2.04 15 28 H 0.16 2.61 8.06 -2.91 -0.02 2.58 15 29 H 0.13 4.15 8.06 -2.91 -0.02 4.12 15 Total: -1.00 -72.91 251.38 4.16 -68.75 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: 1.08 Total: 9.70 kcal Atomic # 6 Polarization: -38.44 SS G_CDS: 2.57 Total: -35.88 kcal Atomic # 7 Polarization: -60.70 SS G_CDS: 0.30 Total: -60.40 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: -1.67 Total: -27.34 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 1.88 Total: 45.17 kcal Total: -72.91 4.16 -68.75 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039281074.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.016 kcal (2) G-P(sol) polarization free energy of solvation -72.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds