Wall clock time and date at job start Mon Mar 30 2020 03:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38163 * 120.02715 * 2 1 4 4 C 1.38243 * 120.05438 * 179.97438 * 3 2 1 5 5 C 1.38289 * 120.11362 * 359.97438 * 4 3 2 6 6 C 1.38125 * 120.05159 * 0.02562 * 5 4 3 7 7 C 1.38708 * 120.02785 * 179.97438 * 2 1 3 8 8 O 1.35899 * 120.05461 * 359.97438 * 7 2 1 9 9 C 1.42903 * 116.99930 * 180.02562 * 8 7 2 10 10 C 1.50697 * 109.47103 * 180.02562 * 9 8 7 11 11 O 1.21432 * 120.00504 * 0.02562 * 10 9 8 12 12 C 1.41029 * 120.00062 * 180.02562 * 10 9 8 13 13 H 1.07996 * 119.99861 * 0.02562 * 12 10 9 14 14 C 1.40457 * 120.00098 * 179.97438 * 12 10 9 15 15 N 1.30519 * 120.00343 * 0.02562 * 14 12 10 16 16 Si 1.86798 * 120.00002 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47164 * 60.00455 * 16 14 12 18 18 H 1.48499 * 109.47245 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47420 * 300.00344 * 16 14 12 20 20 H 1.08998 * 109.47128 * 270.02582 * 1 2 3 21 21 H 1.08999 * 109.46873 * 30.02607 * 1 2 3 22 22 H 1.09000 * 109.47139 * 150.02308 * 1 2 3 23 23 H 1.08001 * 119.97024 * 359.97438 * 3 2 1 24 24 H 1.08004 * 119.94070 * 180.02562 * 4 3 2 25 25 H 1.07993 * 119.96940 * 180.28495 * 5 4 3 26 26 H 1.08000 * 120.02364 * 180.02562 * 6 5 4 27 27 H 1.08998 * 109.47294 * 300.00489 * 9 8 7 28 28 H 1.08995 * 109.47056 * 60.00501 * 9 8 7 29 29 H 0.96997 * 120.00432 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1985 1.1962 0.0000 4 6 3.5809 1.1969 0.0005 5 6 4.2753 0.0009 0.0016 6 6 3.5887 -1.1976 0.0016 7 6 2.2012 -1.2009 0.0005 8 8 1.5234 -2.3788 0.0016 9 6 2.3034 -3.5762 0.0027 10 6 1.3872 -4.7726 0.0031 11 8 0.1831 -4.6153 0.0021 12 6 1.9281 -6.0750 0.0047 13 1 2.9990 -6.2150 0.0060 14 6 1.0741 -7.1901 0.0056 15 7 -0.2201 -7.0211 0.0045 16 14 1.7906 -8.9153 0.0070 17 1 2.6269 -9.1029 1.2197 18 1 0.6875 -9.9094 0.0073 19 1 2.6270 -9.1049 -1.2053 20 1 -0.3633 0.0005 1.0276 21 1 -0.3633 0.8897 -0.5142 22 1 -0.3633 -0.8902 -0.5135 23 1 1.6584 2.1315 -0.0004 24 1 4.1195 2.1330 0.0010 25 1 5.3552 0.0042 0.0067 26 1 4.1314 -2.1313 0.0029 27 1 2.9324 -3.6009 -0.8872 28 1 2.9322 -3.5993 0.8927 29 1 -0.8098 -7.7912 0.0048 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041204434.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:19 Heat of formation + Delta-G solvation = -84.486664 kcal Electronic energy + Delta-G solvation = -14148.333024 eV Core-core repulsion = 11614.627453 eV Total energy + Delta-G solvation = -2533.705571 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.14545 -39.13205 -37.78150 -34.81164 -33.71703 -31.12724 -30.33392 -27.96863 -27.42375 -23.46920 -22.39136 -21.48268 -19.02260 -18.29520 -17.43869 -16.92558 -16.62425 -16.44631 -15.45618 -15.10145 -14.90148 -14.76243 -13.98833 -13.85871 -13.53699 -13.34485 -13.15830 -12.94549 -12.65191 -12.45749 -12.20967 -12.09999 -11.81620 -11.68988 -11.00722 -9.74717 -9.64253 -9.01515 -8.38860 -7.20907 0.40004 0.53991 1.36507 1.37601 1.54184 2.09933 2.15702 2.44909 2.84649 3.24913 3.87982 3.92779 4.12005 4.22906 4.41866 4.44031 4.50690 4.52417 4.69620 4.76718 4.77843 4.99699 5.12766 5.32366 5.48443 5.56252 5.61408 5.86093 5.96227 6.48073 6.61704 6.74183 8.16426 8.42721 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.055328 B = 0.006230 C = 0.005623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.953561 B = 4493.197503 C = 4978.705770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.147 4.147 3 C -0.082 4.082 4 C -0.158 4.158 5 C -0.086 4.086 6 C -0.224 4.224 7 C 0.091 3.909 8 O -0.323 6.323 9 C 0.032 3.968 10 C 0.335 3.665 11 O -0.582 6.582 12 C -0.556 4.556 13 H 0.097 0.903 14 C 0.023 3.977 15 N -0.789 5.789 16 Si 1.004 2.996 17 H -0.250 1.250 18 H -0.270 1.270 19 H -0.250 1.250 20 H 0.065 0.935 21 H 0.091 0.909 22 H 0.037 0.963 23 H 0.157 0.843 24 H 0.158 0.842 25 H 0.153 0.847 26 H 0.130 0.870 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.265 10.535 0.009 14.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.147 4.147 3 C -0.100 4.100 4 C -0.176 4.176 5 C -0.104 4.104 6 C -0.242 4.242 7 C 0.046 3.954 8 O -0.236 6.236 9 C -0.043 4.043 10 C 0.232 3.768 11 O -0.474 6.474 12 C -0.587 4.587 13 H 0.116 0.884 14 C -0.196 4.196 15 N -0.418 5.418 16 Si 0.822 3.178 17 H -0.173 1.173 18 H -0.194 1.194 19 H -0.173 1.173 20 H 0.084 0.916 21 H 0.110 0.890 22 H 0.057 0.943 23 H 0.174 0.826 24 H 0.176 0.824 25 H 0.170 0.830 26 H 0.148 0.852 27 H 0.097 0.903 28 H 0.098 0.902 29 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 8.301 10.566 0.007 13.437 hybrid contribution 0.205 -0.992 0.009 1.013 sum 8.506 9.574 0.016 12.807 Atomic orbital electron populations 1.20560 0.90734 1.02357 1.02139 1.19654 0.97075 0.91035 1.06983 1.21211 0.94883 0.96422 0.97494 1.21432 0.93948 0.99031 1.03182 1.21296 1.01104 0.91160 0.96866 1.21507 0.92380 1.01004 1.09338 1.19643 0.92010 0.86365 0.97385 1.86231 1.36560 1.12752 1.88099 1.23322 0.95801 0.83456 1.01760 1.20246 0.88724 0.89135 0.78691 1.90396 1.18488 1.88200 1.50285 1.21131 0.96316 0.91713 1.49503 0.88446 1.27353 0.94464 1.06845 0.90942 1.70096 1.05875 1.34517 1.31316 0.84975 0.78738 0.73339 0.80775 1.17328 1.19412 1.17344 0.91649 0.88989 0.94349 0.82581 0.82448 0.82973 0.85249 0.90253 0.90224 0.90514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.34 9.79 71.24 0.70 -2.64 15 2 C -0.15 -5.01 5.89 -19.77 -0.12 -5.12 15 3 C -0.08 -2.08 9.70 22.25 0.22 -1.86 15 4 C -0.16 -3.50 10.04 22.28 0.22 -3.28 15 5 C -0.09 -2.15 10.04 22.25 0.22 -1.93 15 6 C -0.22 -7.33 9.04 22.36 0.20 -7.13 15 7 C 0.09 3.63 6.66 22.50 0.15 3.78 15 8 O -0.32 -15.94 8.72 -73.39 -0.64 -16.58 15 9 C 0.03 1.55 5.09 71.24 0.36 1.91 15 10 C 0.33 19.97 6.98 26.37 0.18 20.15 15 11 O -0.58 -40.35 15.02 15.52 0.23 -40.12 15 12 C -0.56 -31.04 9.22 23.50 0.22 -30.82 15 13 H 0.10 4.74 7.85 -2.91 -0.02 4.72 15 14 C 0.02 1.26 5.50 85.43 0.47 1.73 15 15 N -0.79 -47.23 11.72 21.91 0.26 -46.97 15 16 Si 1.00 38.83 29.56 68.60 2.03 40.86 15 17 H -0.25 -9.01 7.11 99.48 0.71 -8.31 15 18 H -0.27 -9.99 7.11 99.48 0.71 -9.28 15 19 H -0.25 -9.02 7.11 99.48 0.71 -8.32 15 20 H 0.06 2.09 8.14 -2.39 -0.02 2.07 15 21 H 0.09 2.31 8.09 -2.39 -0.02 2.29 15 22 H 0.04 1.53 7.53 -2.39 -0.02 1.51 15 23 H 0.16 2.82 8.06 -2.91 -0.02 2.80 15 24 H 0.16 2.26 8.06 -2.91 -0.02 2.24 15 25 H 0.15 2.72 8.06 -2.91 -0.02 2.69 15 26 H 0.13 4.04 6.30 -2.91 -0.02 4.02 15 27 H 0.08 3.39 7.66 -2.39 -0.02 3.38 15 28 H 0.08 3.40 7.66 -2.39 -0.02 3.39 15 29 H 0.28 15.15 8.29 -92.71 -0.77 14.39 15 Total: -1.00 -76.29 260.00 5.86 -70.44 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: 1.15 Total: 17.59 kcal Atomic # 6 Polarization: -28.04 SS G_CDS: 2.83 Total: -25.21 kcal Atomic # 7 Polarization: -47.23 SS G_CDS: 0.26 Total: -46.97 kcal Atomic # 8 Polarization: -56.29 SS G_CDS: -0.41 Total: -56.70 kcal Atomic # 14 Polarization: 38.83 SS G_CDS: 2.03 Total: 40.86 kcal Total: -76.29 5.86 -70.44 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041204434.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.049 kcal (2) G-P(sol) polarization free energy of solvation -76.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds