Wall clock time and date at job start Mon Mar 30 2020 03:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38268 * 119.94321 * 2 1 4 4 C 1.38139 * 120.05510 * 179.97438 * 3 2 1 5 5 C 1.38733 * 119.94507 * 359.97438 * 4 3 2 6 6 O 1.35905 * 120.05258 * 179.97438 * 5 4 3 7 7 C 1.42901 * 116.99604 * 180.02562 * 6 5 4 8 8 C 1.50694 * 109.46937 * 180.02562 * 7 6 5 9 9 O 1.21439 * 120.00399 * 359.97438 * 8 7 6 10 10 C 1.41026 * 119.99893 * 179.97438 * 8 7 6 11 11 H 1.08001 * 120.00437 * 0.02562 * 10 8 7 12 12 C 1.40466 * 119.99994 * 180.02562 * 10 8 7 13 13 N 1.30520 * 119.99976 * 359.97438 * 12 10 8 14 14 Si 1.86798 * 119.99841 * 180.02562 * 12 10 8 15 15 H 1.48495 * 109.47410 * 0.02562 * 14 12 10 16 16 H 1.48507 * 109.47083 * 120.00152 * 14 12 10 17 17 H 1.48503 * 109.47051 * 239.99778 * 14 12 10 18 18 C 1.38723 * 119.88799 * 0.25807 * 5 4 3 19 19 C 1.38145 * 119.94323 * 359.49123 * 18 5 4 20 20 H 1.08999 * 109.46991 * 90.00243 * 1 2 3 21 21 H 1.09001 * 109.46891 * 210.00393 * 1 2 3 22 22 H 1.08994 * 109.47121 * 330.00356 * 1 2 3 23 23 H 1.08008 * 119.97007 * 359.94743 * 3 2 1 24 24 H 1.08001 * 120.02451 * 179.97438 * 4 3 2 25 25 H 1.08999 * 109.47144 * 300.00205 * 7 6 5 26 26 H 1.08998 * 109.47043 * 59.99803 * 7 6 5 27 27 H 0.96999 * 119.99899 * 180.02562 * 13 12 10 28 28 H 1.08001 * 120.02769 * 179.72249 * 18 5 4 29 29 H 1.08006 * 119.97076 * 180.25587 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1972 1.1981 0.0000 4 6 3.5786 1.2008 0.0005 5 6 4.2735 0.0000 0.0016 6 8 5.6325 0.0001 0.0016 7 6 6.2813 -1.2731 0.0022 8 6 7.7752 -1.0756 0.0027 9 8 8.2394 0.0466 0.0022 10 6 8.6343 -2.1940 0.0039 11 1 8.2216 -3.1920 0.0040 12 6 10.0269 -2.0099 0.0049 13 7 10.5257 -0.8038 0.0043 14 14 11.1647 -3.4913 0.0058 15 1 10.3560 -4.7367 0.0045 16 1 12.0224 -3.4574 -1.2061 17 1 12.0206 -3.4574 1.2189 18 6 3.5787 -1.2007 -0.0033 19 6 2.1973 -1.1980 0.0014 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 -0.8900 0.5139 22 1 -0.3633 0.8900 0.5137 23 1 1.6558 2.1327 -0.0009 24 1 4.1172 2.1370 0.0001 25 1 5.9884 -1.8297 0.8924 26 1 5.9884 -1.8305 -0.8875 27 1 11.4873 -0.6767 0.0047 28 1 4.1174 -2.1367 -0.0070 29 1 1.6559 -2.1326 0.0018 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041204438.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:24 Heat of formation + Delta-G solvation = -65.221605 kcal Electronic energy + Delta-G solvation = -13903.556112 eV Core-core repulsion = 11370.685937 eV Total energy + Delta-G solvation = -2532.870176 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.68416 -37.53586 -36.10610 -32.71516 -31.71812 -30.77943 -28.57237 -26.43714 -25.32402 -22.51165 -21.02463 -19.60343 -17.66663 -16.32991 -15.67982 -15.20363 -15.07496 -14.92927 -14.08060 -13.60435 -13.50448 -13.21882 -13.03131 -12.37431 -12.25218 -11.72190 -11.45529 -11.42421 -11.26897 -10.97648 -10.58527 -10.41122 -10.21712 -10.05524 -9.00570 -8.76013 -7.63898 -7.48134 -6.34324 -5.01638 1.59093 1.71875 2.99789 3.09569 3.14464 3.83992 4.01821 4.06757 4.13609 5.00641 5.03455 5.20886 5.29324 5.38753 5.58229 5.61688 5.75594 5.87478 5.96683 6.06009 6.25669 6.34052 6.36730 6.55384 6.73989 6.80387 7.09599 7.16781 7.94916 8.02172 8.73060 8.73231 10.25052 10.46205 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.074048 B = 0.005347 C = 0.005005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 378.042548 B = 5235.002369 C = 5592.597938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.146 4.146 3 C -0.082 4.082 4 C -0.158 4.158 5 C 0.137 3.863 6 O -0.289 6.289 7 C 0.017 3.983 8 C 0.365 3.635 9 O -0.522 6.522 10 C -0.532 4.532 11 H 0.073 0.927 12 C 0.082 3.918 13 N -0.737 5.737 14 Si 0.912 3.088 15 H -0.260 1.260 16 H -0.273 1.273 17 H -0.272 1.272 18 C -0.213 4.213 19 C -0.080 4.080 20 H 0.062 0.938 21 H 0.060 0.940 22 H 0.060 0.940 23 H 0.123 0.877 24 H 0.129 0.871 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.275 0.725 28 H 0.129 0.871 29 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.549 -2.025 -0.014 13.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.147 4.147 3 C -0.100 4.100 4 C -0.177 4.177 5 C 0.090 3.910 6 O -0.200 6.200 7 C -0.059 4.059 8 C 0.257 3.743 9 O -0.409 6.409 10 C -0.564 4.564 11 H 0.091 0.909 12 C -0.142 4.142 13 N -0.365 5.365 14 Si 0.736 3.264 15 H -0.184 1.184 16 H -0.198 1.198 17 H -0.198 1.198 18 C -0.232 4.232 19 C -0.098 4.098 20 H 0.081 0.919 21 H 0.079 0.921 22 H 0.079 0.921 23 H 0.141 0.859 24 H 0.147 0.853 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.146 0.854 29 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -13.063 -1.169 -0.014 13.115 hybrid contribution 0.405 -1.184 -0.005 1.252 sum -12.657 -2.354 -0.018 12.874 Atomic orbital electron populations 1.20644 0.91563 1.02120 1.01651 1.19704 0.95783 0.93196 1.05987 1.20757 0.92992 0.97413 0.98818 1.20469 0.93644 0.96693 1.06847 1.19386 0.84288 0.93877 0.93448 1.86329 1.14183 1.32898 1.86635 1.23768 0.98758 0.83065 1.00309 1.19426 0.84543 0.90774 0.79567 1.90451 1.76653 1.26367 1.47431 1.20579 0.91449 0.94548 1.49806 0.90871 1.25993 0.99021 0.96666 0.92525 1.69963 1.13457 1.22296 1.30833 0.86239 0.79922 0.81701 0.78586 1.18377 1.19770 1.19764 1.21341 0.95181 0.97650 1.09043 1.20757 0.93315 0.97327 0.98414 0.91911 0.92109 0.92062 0.85940 0.85308 0.91873 0.91871 0.91385 0.85362 0.86342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.00 10.01 36.01 0.36 -0.64 15 2 C -0.15 -1.95 5.88 -104.60 -0.62 -2.57 15 3 C -0.08 -1.15 9.69 -39.61 -0.38 -1.53 15 4 C -0.16 -2.69 9.99 -39.44 -0.39 -3.08 15 5 C 0.14 2.67 6.69 -39.22 -0.26 2.40 15 6 O -0.29 -6.83 9.67 -39.34 -0.38 -7.21 15 7 C 0.02 0.39 5.09 36.00 0.18 0.58 15 8 C 0.36 10.44 6.98 -33.26 -0.23 10.21 15 9 O -0.52 -17.18 15.02 -14.48 -0.22 -17.40 15 10 C -0.53 -14.63 9.22 -37.69 -0.35 -14.98 15 11 H 0.07 1.81 7.85 -52.49 -0.41 1.40 15 12 C 0.08 2.20 5.50 -17.27 -0.10 2.10 15 13 N -0.74 -21.37 11.72 55.57 0.65 -20.72 15 14 Si 0.91 19.16 29.56 -169.99 -5.03 14.13 15 15 H -0.26 -5.26 7.11 56.52 0.40 -4.86 15 16 H -0.27 -5.60 7.11 56.52 0.40 -5.20 15 17 H -0.27 -5.60 7.11 56.52 0.40 -5.19 15 18 C -0.21 -3.58 9.04 -39.44 -0.36 -3.94 15 19 C -0.08 -1.13 9.69 -39.61 -0.38 -1.52 15 20 H 0.06 0.55 8.14 -51.93 -0.42 0.13 15 21 H 0.06 0.53 8.08 -51.93 -0.42 0.11 15 22 H 0.06 0.52 8.08 -51.93 -0.42 0.10 15 23 H 0.12 1.36 8.06 -52.48 -0.42 0.94 15 24 H 0.13 2.11 8.06 -52.49 -0.42 1.69 15 25 H 0.06 1.32 7.67 -51.93 -0.40 0.92 15 26 H 0.06 1.32 7.65 -51.93 -0.40 0.92 15 27 H 0.28 7.09 8.29 -40.82 -0.34 6.75 15 28 H 0.13 2.03 6.30 -52.49 -0.33 1.70 15 29 H 0.12 1.36 8.06 -52.48 -0.42 0.93 15 LS Contribution 261.34 15.07 3.94 3.94 Total: -1.00 -33.11 261.34 -6.76 -39.87 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: -3.20 Total: 0.35 kcal Atomic # 6 Polarization: -10.43 SS G_CDS: -2.53 Total: -12.96 kcal Atomic # 7 Polarization: -21.37 SS G_CDS: 0.65 Total: -20.72 kcal Atomic # 8 Polarization: -24.01 SS G_CDS: -0.60 Total: -24.61 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.03 Total: 14.13 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -33.11 -6.76 -39.87 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041204438.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.349 kcal (2) G-P(sol) polarization free energy of solvation -33.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds