Wall clock time and date at job start Mon Mar 30 2020 03:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86795 * 120.00293 * 2 1 4 4 H 1.48498 * 109.47320 * 274.66939 * 3 2 1 5 5 H 1.48502 * 109.46987 * 34.66753 * 3 2 1 6 6 H 1.48495 * 109.47235 * 154.66299 * 3 2 1 7 7 C 1.39949 * 119.99743 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99748 * 162.23898 * 7 2 1 9 9 C 1.41394 * 119.99760 * 342.23561 * 7 2 1 10 10 C 1.40732 * 120.24981 * 335.29446 * 9 7 2 11 11 C 1.37590 * 119.74889 * 180.02562 * 10 9 7 12 12 C 1.38657 * 120.25019 * 359.97332 * 11 10 9 13 13 C 1.38616 * 120.50222 * 0.02562 * 12 11 10 14 14 C 1.50690 * 119.87836 * 179.97438 * 13 12 11 15 15 O 1.43756 * 109.63457 * 118.90920 * 14 13 12 16 16 C 1.44586 * 104.91800 * 215.71142 * 15 14 13 17 17 C 1.54907 * 101.63899 * 36.26156 * 16 15 14 18 18 O 1.43365 * 109.63428 * 359.69059 * 14 13 12 19 19 C 1.37641 * 120.24532 * 0.02562 * 13 12 11 20 20 H 0.97004 * 119.99904 * 359.97438 * 1 2 3 21 21 H 1.07997 * 120.12399 * 0.02562 * 10 9 7 22 22 H 1.08003 * 119.87821 * 180.24941 * 11 10 9 23 23 H 1.07997 * 119.75500 * 180.02562 * 12 11 10 24 24 H 1.09005 * 109.62936 * 239.29482 * 14 13 12 25 25 H 1.08998 * 111.08168 * 278.14954 * 16 15 14 26 26 H 1.08998 * 110.97486 * 154.32852 * 16 15 14 27 27 H 1.09003 * 110.69759 * 205.95708 * 17 16 15 28 28 H 1.09009 * 110.84106 * 82.82567 * 17 16 15 29 29 H 1.07996 * 120.12821 * 179.97438 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 2.3911 2.1033 -1.3954 5 1 1.4926 2.6221 0.7964 6 1 3.5856 1.4136 0.5991 7 6 2.0079 -1.2120 -0.0005 8 1 3.0493 -1.2342 -0.2859 9 6 1.3514 -2.4074 0.3725 10 6 0.2229 -2.3642 1.2122 11 6 -0.4077 -3.5338 1.5692 12 6 0.0644 -4.7519 1.1045 13 6 1.1750 -4.8066 0.2769 14 6 1.6764 -6.1381 -0.2195 15 8 1.6135 -6.1731 -1.6553 16 6 1.2585 -7.5368 -1.9791 17 6 0.2874 -7.8895 -0.8249 18 8 0.8514 -7.1883 0.3018 19 6 1.8222 -3.6493 -0.0922 20 1 -0.4850 0.8401 0.0004 21 1 -0.1468 -1.4165 1.5750 22 1 -1.2764 -3.5027 2.2103 23 1 -0.4370 -5.6650 1.3894 24 1 2.7063 -6.2859 0.1055 25 1 2.1351 -8.1844 -1.9633 26 1 0.7539 -7.5900 -2.9438 27 1 0.2780 -8.9644 -0.6443 28 1 -0.7181 -7.5275 -1.0398 29 1 2.6876 -3.6941 -0.7367 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044368160.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:45 Heat of formation + Delta-G solvation = -90.087503 kcal Electronic energy + Delta-G solvation = -14497.186437 eV Core-core repulsion = 11963.237995 eV Total energy + Delta-G solvation = -2533.948442 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.38795 -39.15346 -36.01416 -35.60397 -32.55168 -31.75394 -29.94743 -27.20144 -25.67301 -24.14070 -22.55790 -21.97094 -19.16533 -18.18590 -17.69828 -17.20395 -16.65494 -16.37064 -15.71859 -15.27466 -15.08879 -14.34158 -14.32578 -13.80308 -13.67445 -13.45140 -12.99831 -12.80543 -12.57340 -12.38511 -12.11565 -11.79033 -11.36148 -11.12295 -11.03597 -10.59838 -9.42384 -9.29193 -8.64859 -6.36226 0.91987 0.97774 1.37992 1.48889 1.54842 2.21140 2.54428 2.74387 3.06370 3.68795 3.73968 3.94894 4.14109 4.31010 4.36678 4.51681 4.60627 4.72485 4.78000 4.99411 5.00838 5.11937 5.26522 5.42661 5.62315 5.94748 6.04982 6.07211 6.22011 6.35392 6.65537 6.91453 6.99449 8.33375 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.051829 B = 0.007172 C = 0.006636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.109757 B = 3903.095074 C = 4218.384259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.035 3.965 3 Si 0.985 3.015 4 H -0.262 1.262 5 H -0.264 1.264 6 H -0.259 1.259 7 C -0.502 4.502 8 H 0.075 0.925 9 C 0.076 3.924 10 C -0.182 4.182 11 C -0.114 4.114 12 C -0.210 4.210 13 C -0.097 4.097 14 C 0.288 3.712 15 O -0.398 6.398 16 C 0.009 3.991 17 C 0.014 3.986 18 O -0.393 6.393 19 C -0.215 4.215 20 H 0.289 0.711 21 H 0.104 0.896 22 H 0.115 0.885 23 H 0.116 0.884 24 H 0.096 0.904 25 H 0.097 0.903 26 H 0.128 0.872 27 H 0.134 0.866 28 H 0.070 0.930 29 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.008 -9.921 -2.016 10.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.180 4.180 3 Si 0.805 3.195 4 H -0.187 1.187 5 H -0.188 1.188 6 H -0.182 1.182 7 C -0.532 4.532 8 H 0.093 0.907 9 C 0.073 3.927 10 C -0.202 4.202 11 C -0.132 4.132 12 C -0.229 4.229 13 C -0.098 4.098 14 C 0.193 3.807 15 O -0.319 6.319 16 C -0.066 4.066 17 C -0.062 4.062 18 O -0.315 6.315 19 C -0.235 4.235 20 H 0.099 0.901 21 H 0.122 0.878 22 H 0.133 0.867 23 H 0.134 0.866 24 H 0.113 0.887 25 H 0.115 0.885 26 H 0.145 0.855 27 H 0.152 0.848 28 H 0.088 0.912 29 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.805 -9.643 -1.959 9.873 hybrid contribution 0.147 0.797 -0.133 0.821 sum 0.952 -8.846 -2.093 9.140 Atomic orbital electron populations 1.69880 1.09090 1.30612 1.35780 1.26787 0.95506 1.04582 0.91077 0.85163 0.79168 0.75768 0.79407 1.18703 1.18828 1.18225 1.19807 0.98332 0.92457 1.42564 0.90674 1.17947 0.92177 0.92887 0.89644 1.21356 0.99994 0.97181 1.01647 1.20995 0.99265 0.92830 1.00082 1.20460 0.99743 0.96860 1.05854 1.19821 0.97189 0.93557 0.99213 1.22525 0.93879 0.85650 0.78615 1.89293 1.91097 1.30646 1.20861 1.24669 0.99060 0.82069 1.00810 1.24446 0.97565 0.99534 0.84616 1.88842 1.65398 1.45738 1.31477 1.20835 1.04099 0.92469 1.06063 0.90065 0.87758 0.86746 0.86566 0.88707 0.88495 0.85452 0.84825 0.91192 0.88826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.70 10.97 21.83 0.24 -44.46 15 2 C 0.04 1.83 5.14 85.26 0.44 2.26 15 3 Si 0.98 39.20 29.59 68.60 2.03 41.23 15 4 H -0.26 -10.02 7.11 99.48 0.71 -9.31 15 5 H -0.26 -9.91 7.11 99.48 0.71 -9.21 15 6 H -0.26 -10.10 7.11 99.48 0.71 -9.39 15 7 C -0.50 -28.34 9.05 23.46 0.21 -28.13 15 8 H 0.08 4.09 7.91 -2.91 -0.02 4.07 15 9 C 0.08 4.33 5.57 -21.29 -0.12 4.21 15 10 C -0.18 -10.10 8.70 22.73 0.20 -9.91 15 11 C -0.11 -5.60 10.02 22.22 0.22 -5.37 15 12 C -0.21 -9.90 9.39 22.46 0.21 -9.69 15 13 C -0.10 -4.63 5.56 -19.92 -0.11 -4.75 15 14 C 0.29 11.08 4.30 71.23 0.31 11.39 15 15 O -0.40 -14.67 11.22 -126.20 -1.42 -16.08 15 16 C 0.01 0.22 7.95 72.63 0.58 0.80 15 17 C 0.01 0.34 8.07 72.63 0.59 0.92 15 18 O -0.39 -13.38 9.69 -126.20 -1.22 -14.60 15 19 C -0.21 -11.40 9.37 22.73 0.21 -11.19 15 20 H 0.29 13.99 8.30 -92.71 -0.77 13.22 15 21 H 0.10 5.95 6.18 -2.91 -0.02 5.94 15 22 H 0.11 4.92 8.06 -2.91 -0.02 4.90 15 23 H 0.12 4.96 6.99 -2.91 -0.02 4.94 15 24 H 0.10 3.39 8.14 -2.38 -0.02 3.38 15 25 H 0.10 1.76 8.14 -2.39 -0.02 1.74 15 26 H 0.13 2.32 8.14 -2.39 -0.02 2.30 15 27 H 0.13 2.10 8.14 -2.39 -0.02 2.08 15 28 H 0.07 1.72 8.14 -2.38 -0.02 1.70 15 29 H 0.09 4.81 8.06 -2.91 -0.02 4.79 15 Total: -1.00 -65.74 252.12 3.51 -62.23 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: 1.15 Total: 21.13 kcal Atomic # 6 Polarization: -52.18 SS G_CDS: 2.74 Total: -49.45 kcal Atomic # 7 Polarization: -44.70 SS G_CDS: 0.24 Total: -44.46 kcal Atomic # 8 Polarization: -28.05 SS G_CDS: -2.64 Total: -30.68 kcal Atomic # 14 Polarization: 39.20 SS G_CDS: 2.03 Total: 41.23 kcal Total: -65.74 3.51 -62.23 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044368160.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.856 kcal (2) G-P(sol) polarization free energy of solvation -65.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds