Wall clock time and date at job start Mon Mar 30 2020 03:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86796 * 120.00381 * 2 1 4 4 H 1.48497 * 109.47620 * 240.00811 * 3 2 1 5 5 H 1.48504 * 109.47201 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46993 * 120.00329 * 3 2 1 7 7 C 1.39944 * 119.99661 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00096 * 162.28774 * 7 2 1 9 9 C 1.41398 * 120.00134 * 342.55151 * 7 2 1 10 10 C 1.40714 * 120.24287 * 155.02246 * 9 7 2 11 11 C 1.37622 * 119.74394 * 179.69961 * 10 9 7 12 12 C 1.38631 * 120.24681 * 0.58243 * 11 10 9 13 13 C 1.50696 * 119.75239 * 179.69081 * 12 11 10 14 14 O 1.43753 * 109.63014 * 118.92874 * 13 12 11 15 15 C 1.44588 * 104.91905 * 215.71019 * 14 13 12 16 16 C 1.54918 * 101.63669 * 36.27209 * 15 14 13 17 17 O 1.43366 * 109.63082 * 359.71930 * 13 12 11 18 18 C 1.38640 * 120.50229 * 359.71945 * 12 11 10 19 19 C 1.37624 * 120.24694 * 359.97307 * 18 12 11 20 20 H 0.97001 * 119.99746 * 359.97438 * 1 2 3 21 21 H 1.08002 * 120.13270 * 359.97438 * 10 9 7 22 22 H 1.08000 * 119.87318 * 180.27700 * 11 10 9 23 23 H 1.08994 * 109.63315 * 239.32392 * 13 12 11 24 24 H 1.08997 * 111.08977 * 278.16117 * 15 14 13 25 25 H 1.09001 * 110.97955 * 154.33173 * 15 14 13 26 26 H 1.08996 * 110.69575 * 205.95598 * 16 15 14 27 27 H 1.09002 * 110.83920 * 82.81823 * 16 15 14 28 28 H 1.07992 * 119.87884 * 179.97438 * 18 12 11 29 29 H 1.07993 * 120.12560 * 180.02562 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 3.0959 1.6964 -1.2125 5 1 1.2774 2.7465 0.0006 6 1 3.0961 1.6962 1.2125 7 6 2.0079 -1.2120 -0.0005 8 1 3.0495 -1.2341 -0.2851 9 6 1.3496 -2.4085 0.3661 10 6 1.8187 -3.6486 -0.1053 11 6 1.1739 -4.8073 0.2630 12 6 0.0591 -4.7549 1.0853 13 6 -0.6425 -6.0301 1.4760 14 8 -0.6012 -6.1858 2.9045 15 6 -0.4592 -7.6085 3.1199 16 6 0.4604 -8.0128 1.9406 17 8 0.0207 -7.1489 0.8731 18 6 -0.4156 -3.5382 1.5506 19 6 0.2171 -2.3674 1.2002 20 1 -0.4850 0.8401 0.0004 21 1 2.6841 -3.6913 -0.7501 22 1 1.5349 -5.7605 -0.0940 23 1 -1.6792 -5.9950 1.1413 24 1 -1.4230 -8.1133 3.0539 25 1 0.0211 -7.8123 4.0769 26 1 0.3099 -9.0594 1.6760 27 1 1.5065 -7.8246 2.1824 28 1 -1.2851 -3.5091 2.1904 29 1 -0.1541 -1.4208 1.5641 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044369329.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:40 Heat of formation + Delta-G solvation = -73.122461 kcal Electronic energy + Delta-G solvation = -14437.118063 eV Core-core repulsion = 11903.905280 eV Total energy + Delta-G solvation = -2533.212783 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.95253 -37.24910 -34.59372 -33.75168 -30.90850 -29.28200 -28.84560 -25.96227 -23.23604 -22.94395 -20.83570 -20.00401 -17.30392 -16.85449 -16.50433 -15.54335 -15.18404 -14.51410 -13.89192 -13.68356 -13.51115 -12.79049 -12.56178 -12.33123 -11.86661 -11.71463 -11.46597 -11.10710 -11.03127 -10.85393 -10.41748 -9.95827 -9.80959 -9.40744 -9.17017 -8.98655 -7.43988 -7.32327 -6.76847 -4.36634 2.72554 3.06363 3.08883 3.12435 3.17699 3.86068 3.92794 4.46988 4.66101 4.80627 5.05246 5.26599 5.56415 5.65377 5.74910 5.82906 6.13531 6.23530 6.42146 6.47360 6.96975 7.06983 7.25406 7.35674 7.51422 7.65385 7.85596 8.06127 8.15844 8.30820 8.64243 8.89194 8.97884 10.17512 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.069705 B = 0.006519 C = 0.006239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 401.595879 B = 4294.034264 C = 4487.072409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.076 3.924 3 Si 0.910 3.090 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.462 4.462 8 H 0.078 0.922 9 C 0.117 3.883 10 C -0.233 4.233 11 C -0.060 4.060 12 C -0.245 4.245 13 C 0.296 3.704 14 O -0.374 6.374 15 C 0.014 3.986 16 C 0.021 3.979 17 O -0.382 6.382 18 C -0.075 4.075 19 C -0.170 4.170 20 H 0.282 0.718 21 H 0.093 0.907 22 H 0.097 0.903 23 H 0.076 0.924 24 H 0.068 0.932 25 H 0.101 0.899 26 H 0.091 0.909 27 H 0.072 0.928 28 H 0.089 0.911 29 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.736 -8.539 3.836 9.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.142 4.142 3 Si 0.734 3.266 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.491 4.491 8 H 0.096 0.904 9 C 0.114 3.886 10 C -0.252 4.252 11 C -0.078 4.078 12 C -0.247 4.247 13 C 0.202 3.798 14 O -0.295 6.295 15 C -0.063 4.063 16 C -0.055 4.055 17 O -0.303 6.303 18 C -0.094 4.094 19 C -0.189 4.189 20 H 0.093 0.907 21 H 0.111 0.889 22 H 0.115 0.885 23 H 0.093 0.907 24 H 0.086 0.914 25 H 0.119 0.881 26 H 0.109 0.891 27 H 0.090 0.910 28 H 0.107 0.893 29 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -0.939 -8.219 3.745 9.081 hybrid contribution 0.264 0.627 0.029 0.681 sum -0.675 -7.592 3.775 8.505 Atomic orbital electron populations 1.69823 1.07623 1.29389 1.34711 1.25934 0.94738 1.01371 0.92176 0.86350 0.80144 0.80120 0.80002 1.18977 1.20312 1.18791 1.19603 0.98094 0.91250 1.40131 0.90381 1.17671 0.90869 0.92071 0.87964 1.20971 1.04096 0.92862 1.07310 1.20313 0.94121 0.96830 0.96570 1.19088 1.02939 0.91863 1.10796 1.22500 0.94568 0.86050 0.76637 1.89313 1.94548 1.21896 1.23762 1.24239 0.99137 0.82992 0.99923 1.24080 0.99130 0.95250 0.87072 1.88853 1.76543 1.34572 1.30306 1.20380 0.98359 0.92301 0.98369 1.21267 0.99534 0.96575 1.01567 0.90749 0.88888 0.88532 0.90716 0.91376 0.88116 0.89058 0.91001 0.89294 0.86294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.65 10.95 55.55 0.61 -20.05 15 2 C 0.08 1.93 5.15 -17.34 -0.09 1.84 15 3 Si 0.91 18.79 29.59 -169.99 -5.03 13.76 15 4 H -0.27 -5.39 7.11 56.52 0.40 -4.99 15 5 H -0.28 -5.57 7.11 56.52 0.40 -5.17 15 6 H -0.26 -5.40 7.11 56.52 0.40 -5.00 15 7 C -0.46 -12.46 9.05 -37.74 -0.34 -12.81 15 8 H 0.08 2.02 7.91 -52.48 -0.41 1.60 15 9 C 0.12 3.21 5.57 -106.83 -0.60 2.61 15 10 C -0.23 -5.98 9.80 -38.87 -0.38 -6.36 15 11 C -0.06 -1.44 9.35 -39.66 -0.37 -1.81 15 12 C -0.25 -5.79 5.59 -104.33 -0.58 -6.37 15 13 C 0.30 5.88 4.30 36.00 0.15 6.03 15 14 O -0.37 -7.01 11.22 -59.05 -0.66 -7.67 15 15 C 0.01 0.18 7.95 38.17 0.30 0.49 15 16 C 0.02 0.29 8.07 38.17 0.31 0.60 15 17 O -0.38 -7.01 9.68 -59.05 -0.57 -7.58 15 18 C -0.08 -1.87 9.60 -39.66 -0.38 -2.25 15 19 C -0.17 -4.58 8.70 -38.87 -0.34 -4.91 15 20 H 0.28 6.68 8.30 -40.82 -0.34 6.34 15 21 H 0.09 2.23 8.06 -52.49 -0.42 1.81 15 22 H 0.10 2.14 6.99 -52.49 -0.37 1.78 15 23 H 0.08 1.42 8.14 -51.93 -0.42 0.99 15 24 H 0.07 0.76 8.14 -51.93 -0.42 0.33 15 25 H 0.10 1.06 8.14 -51.93 -0.42 0.64 15 26 H 0.09 0.94 8.14 -51.93 -0.42 0.51 15 27 H 0.07 0.97 8.14 -51.93 -0.42 0.54 15 28 H 0.09 2.02 8.06 -52.49 -0.42 1.60 15 29 H 0.12 3.27 6.16 -52.49 -0.32 2.94 15 LS Contribution 252.08 15.07 3.80 3.80 Total: -1.00 -29.37 252.08 -7.37 -36.74 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -3.20 Total: 3.93 kcal Atomic # 6 Polarization: -20.62 SS G_CDS: -2.31 Total: -22.93 kcal Atomic # 7 Polarization: -20.65 SS G_CDS: 0.61 Total: -20.05 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: -1.23 Total: -15.25 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.03 Total: 13.76 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -29.37 -7.37 -36.74 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044369329.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.380 kcal (2) G-P(sol) polarization free energy of solvation -29.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds