Wall clock time and date at job start Mon Mar 30 2020 03:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86796 * 120.00381 * 2 1 4 4 H 1.48497 * 109.47620 * 240.00811 * 3 2 1 5 5 H 1.48504 * 109.47201 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46993 * 120.00329 * 3 2 1 7 7 C 1.39944 * 119.99661 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00096 * 162.28774 * 7 2 1 9 9 C 1.41398 * 120.00134 * 342.55151 * 7 2 1 10 10 C 1.40714 * 120.24287 * 155.02246 * 9 7 2 11 11 C 1.37622 * 119.74394 * 179.69961 * 10 9 7 12 12 C 1.38631 * 120.24681 * 0.58243 * 11 10 9 13 13 C 1.50696 * 119.75239 * 179.69081 * 12 11 10 14 14 O 1.43753 * 109.63014 * 118.92874 * 13 12 11 15 15 C 1.44588 * 104.91905 * 215.71019 * 14 13 12 16 16 C 1.54918 * 101.63669 * 36.27209 * 15 14 13 17 17 O 1.43366 * 109.63082 * 359.71930 * 13 12 11 18 18 C 1.38640 * 120.50229 * 359.71945 * 12 11 10 19 19 C 1.37624 * 120.24694 * 359.97307 * 18 12 11 20 20 H 0.97001 * 119.99746 * 359.97438 * 1 2 3 21 21 H 1.08002 * 120.13270 * 359.97438 * 10 9 7 22 22 H 1.08000 * 119.87318 * 180.27700 * 11 10 9 23 23 H 1.08994 * 109.63315 * 239.32392 * 13 12 11 24 24 H 1.08997 * 111.08977 * 278.16117 * 15 14 13 25 25 H 1.09001 * 110.97955 * 154.33173 * 15 14 13 26 26 H 1.08996 * 110.69575 * 205.95598 * 16 15 14 27 27 H 1.09002 * 110.83920 * 82.81823 * 16 15 14 28 28 H 1.07992 * 119.87884 * 179.97438 * 18 12 11 29 29 H 1.07993 * 120.12560 * 180.02562 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 3.0959 1.6964 -1.2125 5 1 1.2774 2.7465 0.0006 6 1 3.0961 1.6962 1.2125 7 6 2.0079 -1.2120 -0.0005 8 1 3.0495 -1.2341 -0.2851 9 6 1.3496 -2.4085 0.3661 10 6 1.8187 -3.6486 -0.1053 11 6 1.1739 -4.8073 0.2630 12 6 0.0591 -4.7549 1.0853 13 6 -0.6425 -6.0301 1.4760 14 8 -0.6012 -6.1858 2.9045 15 6 -0.4592 -7.6085 3.1199 16 6 0.4604 -8.0128 1.9406 17 8 0.0207 -7.1489 0.8731 18 6 -0.4156 -3.5382 1.5506 19 6 0.2171 -2.3674 1.2002 20 1 -0.4850 0.8401 0.0004 21 1 2.6841 -3.6913 -0.7501 22 1 1.5349 -5.7605 -0.0940 23 1 -1.6792 -5.9950 1.1413 24 1 -1.4230 -8.1133 3.0539 25 1 0.0211 -7.8123 4.0769 26 1 0.3099 -9.0594 1.6760 27 1 1.5065 -7.8246 2.1824 28 1 -1.2851 -3.5091 2.1904 29 1 -0.1541 -1.4208 1.5641 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044369329.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:39 Heat of formation + Delta-G solvation = -90.915975 kcal Electronic energy + Delta-G solvation = -14437.889647 eV Core-core repulsion = 11903.905280 eV Total energy + Delta-G solvation = -2533.984367 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.31639 -39.14341 -35.94752 -35.65202 -32.60249 -31.19344 -30.35726 -27.72926 -24.88907 -24.14027 -22.75269 -21.84890 -19.25916 -18.16651 -17.92123 -17.15275 -16.76484 -15.95089 -15.67378 -15.28458 -15.05353 -14.29232 -14.21613 -13.87755 -13.62908 -13.49618 -13.06629 -12.80187 -12.59920 -12.46077 -12.12808 -11.66179 -11.33894 -11.10186 -11.04557 -10.54503 -9.42022 -9.30320 -8.67132 -6.38819 0.86353 1.11589 1.37806 1.49072 1.52466 2.19827 2.55055 2.76783 3.14339 3.69682 3.77996 4.02748 4.18232 4.34417 4.46667 4.51263 4.59362 4.63090 4.80461 4.99122 5.04375 5.13346 5.32015 5.42105 5.66466 5.89214 6.01344 6.06378 6.33097 6.34010 6.64885 6.89589 6.98214 8.30077 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.069705 B = 0.006519 C = 0.006239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 401.595879 B = 4294.034264 C = 4487.072409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.035 3.965 3 Si 0.986 3.014 4 H -0.258 1.258 5 H -0.266 1.266 6 H -0.260 1.260 7 C -0.499 4.499 8 H 0.078 0.922 9 C 0.086 3.914 10 C -0.249 4.249 11 C -0.062 4.062 12 C -0.245 4.245 13 C 0.302 3.698 14 O -0.399 6.399 15 C 0.011 3.989 16 C 0.014 3.986 17 O -0.399 6.399 18 C -0.081 4.081 19 C -0.193 4.193 20 H 0.290 0.710 21 H 0.100 0.900 22 H 0.116 0.884 23 H 0.086 0.914 24 H 0.094 0.906 25 H 0.128 0.872 26 H 0.130 0.870 27 H 0.070 0.930 28 H 0.105 0.895 29 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.716 -9.570 4.366 10.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.181 4.181 3 Si 0.806 3.194 4 H -0.182 1.182 5 H -0.190 1.190 6 H -0.185 1.185 7 C -0.528 4.528 8 H 0.096 0.904 9 C 0.083 3.917 10 C -0.269 4.269 11 C -0.080 4.080 12 C -0.246 4.246 13 C 0.207 3.793 14 O -0.320 6.320 15 C -0.065 4.065 16 C -0.062 4.062 17 O -0.320 6.320 18 C -0.099 4.099 19 C -0.213 4.213 20 H 0.101 0.899 21 H 0.118 0.882 22 H 0.134 0.866 23 H 0.103 0.897 24 H 0.112 0.888 25 H 0.146 0.854 26 H 0.148 0.852 27 H 0.088 0.912 28 H 0.123 0.877 29 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -0.922 -9.286 4.281 10.267 hybrid contribution 0.222 0.751 -0.084 0.788 sum -0.700 -8.534 4.198 9.537 Atomic orbital electron populations 1.69873 1.09127 1.30850 1.34880 1.26831 0.95531 1.04692 0.91006 0.85195 0.78757 0.75278 0.80124 1.18205 1.18989 1.18474 1.19876 0.98428 0.92434 1.42076 0.90367 1.18023 0.91668 0.93164 0.88819 1.21189 1.04782 0.93100 1.07816 1.20551 0.94135 0.97020 0.96334 1.19591 1.02318 0.93495 1.09235 1.22273 0.94469 0.84902 0.77609 1.89263 1.94689 1.25533 1.22557 1.24617 1.00717 0.80155 1.01003 1.24426 0.99080 0.96461 0.86238 1.88831 1.76626 1.34555 1.31985 1.20599 0.98669 0.92268 0.98400 1.21257 1.00431 0.96872 1.02726 0.89915 0.88181 0.86637 0.89691 0.88836 0.85449 0.85199 0.91178 0.87726 0.87745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.86 10.95 21.83 0.24 -43.62 15 2 C 0.03 1.79 5.15 85.26 0.44 2.23 15 3 Si 0.99 38.64 29.59 68.60 2.03 40.67 15 4 H -0.26 -9.73 7.11 99.48 0.71 -9.02 15 5 H -0.27 -9.77 7.11 99.48 0.71 -9.06 15 6 H -0.26 -10.00 7.11 99.48 0.71 -9.29 15 7 C -0.50 -27.77 9.05 23.46 0.21 -27.56 15 8 H 0.08 4.16 7.91 -2.91 -0.02 4.14 15 9 C 0.09 4.86 5.57 -21.29 -0.12 4.74 15 10 C -0.25 -13.06 9.80 22.73 0.22 -12.83 15 11 C -0.06 -2.98 9.35 22.22 0.21 -2.77 15 12 C -0.24 -11.44 5.59 -19.68 -0.11 -11.55 15 13 C 0.30 11.45 4.30 71.23 0.31 11.76 15 14 O -0.40 -14.05 11.22 -126.20 -1.42 -15.46 15 15 C 0.01 0.24 7.95 72.64 0.58 0.82 15 16 C 0.01 0.32 8.07 72.64 0.59 0.91 15 17 O -0.40 -13.65 9.68 -126.20 -1.22 -14.87 15 18 C -0.08 -4.04 9.60 22.22 0.21 -3.83 15 19 C -0.19 -10.75 8.70 22.73 0.20 -10.55 15 20 H 0.29 13.92 8.30 -92.71 -0.77 13.16 15 21 H 0.10 4.92 8.06 -2.91 -0.02 4.90 15 22 H 0.12 5.01 6.99 -2.91 -0.02 4.99 15 23 H 0.09 3.06 8.14 -2.39 -0.02 3.04 15 24 H 0.09 1.67 8.14 -2.39 -0.02 1.65 15 25 H 0.13 2.18 8.14 -2.39 -0.02 2.16 15 26 H 0.13 2.08 8.14 -2.39 -0.02 2.06 15 27 H 0.07 1.69 8.14 -2.39 -0.02 1.67 15 28 H 0.10 4.77 8.06 -2.91 -0.02 4.74 15 29 H 0.10 5.99 6.16 -2.91 -0.02 5.97 15 Total: -1.00 -64.35 252.08 3.51 -60.84 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: 1.15 Total: 21.09 kcal Atomic # 6 Polarization: -51.38 SS G_CDS: 2.73 Total: -48.64 kcal Atomic # 7 Polarization: -43.86 SS G_CDS: 0.24 Total: -43.62 kcal Atomic # 8 Polarization: -27.69 SS G_CDS: -2.64 Total: -30.33 kcal Atomic # 14 Polarization: 38.64 SS G_CDS: 2.03 Total: 40.67 kcal Total: -64.35 3.51 -60.84 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044369329.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.081 kcal (2) G-P(sol) polarization free energy of solvation -64.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds