Wall clock time and date at job start Mon Mar 30 2020 03:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38172 * 120.02308 * 2 1 4 4 C 1.38242 * 120.05426 * 180.02562 * 3 2 1 5 5 C 1.38291 * 120.10934 * 359.96113 * 4 3 2 6 6 C 1.38120 * 120.05825 * 359.97438 * 5 4 3 7 7 C 1.38705 * 120.02982 * 180.26149 * 2 1 3 8 8 O 1.35927 * 120.05966 * 359.97438 * 7 2 1 9 9 C 1.34260 * 117.00032 * 82.08259 * 8 7 2 10 10 O 1.20834 * 120.00321 * 5.54085 * 9 8 7 11 11 C 1.50697 * 120.00157 * 185.54142 * 9 8 7 12 12 C 1.50705 * 109.47361 * 179.97438 * 11 9 8 13 13 H 1.07992 * 119.99687 * 0.02562 * 12 11 9 14 14 C 1.37880 * 119.99786 * 179.97438 * 12 11 9 15 15 N 1.31510 * 120.00061 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 119.99727 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47366 * 90.00255 * 16 14 12 18 18 H 1.48499 * 109.47358 * 210.00083 * 16 14 12 19 19 H 1.48504 * 109.47078 * 330.00111 * 16 14 12 20 20 H 1.09002 * 109.47705 * 89.99800 * 1 2 3 21 21 H 1.09003 * 109.47233 * 209.99617 * 1 2 3 22 22 H 1.08992 * 109.47768 * 329.99511 * 1 2 3 23 23 H 1.08001 * 119.97292 * 0.02562 * 3 2 1 24 24 H 1.07995 * 119.94886 * 179.97438 * 4 3 2 25 25 H 1.08003 * 119.97164 * 180.02562 * 5 4 3 26 26 H 1.08004 * 120.03233 * 180.02562 * 6 5 4 27 27 H 1.08999 * 109.47185 * 300.00245 * 11 9 8 28 28 H 1.09005 * 109.46995 * 59.99747 * 11 9 8 29 29 H 0.97003 * 120.00269 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1963 0.0000 4 6 3.5807 1.1971 -0.0005 5 6 4.2751 0.0011 -0.0003 6 6 3.5887 -1.1974 0.0011 7 6 2.2011 -1.2008 -0.0055 8 8 1.5233 -2.3791 -0.0103 9 6 1.0761 -2.8201 -1.1969 10 8 1.3677 -2.2295 -2.2100 11 6 0.2104 -4.0517 -1.2655 12 6 -0.1540 -4.3304 -2.7010 13 1 0.2057 -3.6809 -3.4852 14 6 -0.9457 -5.4153 -3.0131 15 7 -1.3833 -6.2064 -2.0581 16 14 -1.3967 -5.7611 -4.7925 17 1 -0.3724 -6.6487 -5.3993 18 1 -2.7231 -6.4267 -4.8466 19 1 -1.4533 -4.4828 -5.5463 20 1 -0.3634 0.0000 -1.0276 21 1 -0.3634 -0.8900 0.5138 22 1 -0.3634 0.8898 0.5138 23 1 1.6582 2.1316 0.0004 24 1 4.1194 2.1331 -0.0010 25 1 5.3551 0.0043 -0.0003 26 1 4.1314 -2.1312 0.0017 27 1 0.7558 -4.9024 -0.8569 28 1 -0.6981 -3.8900 -0.6852 29 1 -1.9406 -6.9694 -2.2776 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049806375.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:36 Heat of formation + Delta-G solvation = -65.688097 kcal Electronic energy + Delta-G solvation = -14326.360034 eV Core-core repulsion = 11793.469629 eV Total energy + Delta-G solvation = -2532.890404 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.69024 -38.34373 -35.99214 -33.11041 -32.58291 -30.33649 -29.07968 -26.75133 -24.37541 -22.49894 -21.60293 -20.07631 -17.49924 -16.40324 -16.19733 -15.99544 -15.61292 -14.53743 -14.16671 -14.11112 -13.44325 -13.08530 -12.74580 -12.23528 -12.21449 -11.83472 -11.78815 -11.25933 -11.21748 -10.89817 -10.74575 -10.23304 -10.10175 -9.52947 -9.43521 -8.70742 -8.55414 -8.36743 -6.17961 -4.20603 1.31341 1.44739 3.14517 3.28861 3.33981 3.37707 3.48294 4.04935 4.40035 4.92221 4.94191 5.09544 5.20196 5.33856 5.50511 5.56994 5.77620 5.86855 5.97587 6.31312 6.31818 6.45772 6.53520 6.64792 6.91877 7.06722 7.14221 7.35203 7.83148 8.02071 8.80217 8.90052 9.44814 10.93776 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.051468 B = 0.006478 C = 0.006417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.892577 B = 4321.471264 C = 4362.133497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.092 4.092 3 C -0.111 4.111 4 C -0.126 4.126 5 C -0.115 4.115 6 C -0.122 4.122 7 C 0.097 3.903 8 O -0.311 6.311 9 C 0.460 3.540 10 O -0.498 6.498 11 C 0.035 3.965 12 C -0.522 4.522 13 H 0.077 0.923 14 C 0.059 3.941 15 N -0.895 5.895 16 Si 0.907 3.093 17 H -0.278 1.278 18 H -0.285 1.285 19 H -0.271 1.271 20 H 0.075 0.925 21 H 0.073 0.927 22 H 0.068 0.932 23 H 0.125 0.875 24 H 0.123 0.877 25 H 0.125 0.875 26 H 0.128 0.872 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.468 11.334 5.733 14.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.092 4.092 3 C -0.129 4.129 4 C -0.144 4.144 5 C -0.133 4.133 6 C -0.140 4.140 7 C 0.056 3.944 8 O -0.228 6.228 9 C 0.305 3.695 10 O -0.382 6.382 11 C -0.002 4.002 12 C -0.560 4.560 13 H 0.095 0.905 14 C -0.142 4.142 15 N -0.533 5.533 16 Si 0.734 3.266 17 H -0.204 1.204 18 H -0.211 1.211 19 H -0.196 1.196 20 H 0.093 0.907 21 H 0.092 0.908 22 H 0.087 0.913 23 H 0.143 0.857 24 H 0.141 0.859 25 H 0.143 0.857 26 H 0.146 0.854 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.455 11.353 5.426 14.142 hybrid contribution -0.148 -0.237 -0.889 0.932 sum 6.307 11.117 4.537 13.563 Atomic orbital electron populations 1.20783 0.90605 1.03116 1.03067 1.20158 0.96915 0.92367 0.99765 1.20887 0.94198 0.96881 1.00914 1.21104 0.94205 0.98001 1.01046 1.20947 0.99752 0.91847 1.00784 1.21250 0.92889 0.99156 1.00725 1.18505 0.90434 0.84758 1.00714 1.84740 1.66092 1.34871 1.37121 1.25782 0.77490 0.86845 0.79359 1.90537 1.54449 1.57733 1.35458 1.19154 0.93610 0.86744 1.00656 1.21129 1.31810 1.11901 0.91114 0.90499 1.24990 0.95478 0.95568 0.98214 1.69958 1.35061 1.16065 1.32246 0.86343 0.77699 0.78597 0.83973 1.20423 1.21052 1.19570 0.90660 0.90779 0.91307 0.85698 0.85937 0.85674 0.85394 0.91980 0.91926 0.92539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.83 9.44 36.00 0.34 -1.49 15 2 C -0.09 -1.52 5.88 -104.48 -0.61 -2.13 15 3 C -0.11 -1.51 9.70 -39.60 -0.38 -1.90 15 4 C -0.13 -1.56 10.04 -39.56 -0.40 -1.96 15 5 C -0.12 -1.53 10.04 -39.61 -0.40 -1.92 15 6 C -0.12 -1.97 9.99 -39.43 -0.39 -2.36 15 7 C 0.10 1.81 4.93 -39.22 -0.19 1.62 15 8 O -0.31 -6.48 9.17 -23.61 -0.22 -6.70 15 9 C 0.46 10.89 7.48 36.00 0.27 11.16 15 10 O -0.50 -12.88 15.21 -18.75 -0.29 -13.16 15 11 C 0.04 0.90 5.57 -29.03 -0.16 0.74 15 12 C -0.52 -14.80 8.92 -34.44 -0.31 -15.11 15 13 H 0.08 2.25 6.76 -52.49 -0.35 1.90 15 14 C 0.06 1.66 5.46 -17.82 -0.10 1.57 15 15 N -0.89 -25.69 13.29 55.43 0.74 -24.96 15 16 Si 0.91 21.62 29.54 -169.99 -5.02 16.60 15 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 15 18 H -0.28 -6.63 7.11 56.52 0.40 -6.22 15 19 H -0.27 -6.45 7.11 56.52 0.40 -6.05 15 20 H 0.07 1.24 8.14 -51.93 -0.42 0.81 15 21 H 0.07 1.19 7.54 -51.93 -0.39 0.80 15 22 H 0.07 0.83 8.09 -51.93 -0.42 0.41 15 23 H 0.13 1.35 8.06 -52.49 -0.42 0.93 15 24 H 0.12 1.13 8.06 -52.49 -0.42 0.71 15 25 H 0.13 1.27 8.06 -52.48 -0.42 0.85 15 26 H 0.13 1.92 8.06 -52.48 -0.42 1.50 15 27 H 0.06 1.60 8.14 -51.93 -0.42 1.18 15 28 H 0.06 1.60 8.14 -51.93 -0.42 1.18 15 29 H 0.27 7.16 8.31 -40.82 -0.34 6.83 15 LS Contribution 263.32 15.07 3.97 3.97 Total: -1.00 -30.94 263.32 -6.42 -37.35 By element: Atomic # 1 Polarization: 1.94 SS G_CDS: -3.26 Total: -1.32 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: -2.34 Total: -11.78 kcal Atomic # 7 Polarization: -25.69 SS G_CDS: 0.74 Total: -24.96 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -0.50 Total: -19.86 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -30.94 -6.42 -37.35 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049806375.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.335 kcal (2) G-P(sol) polarization free energy of solvation -30.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds